BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32860.1
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922379 jgi|Araly1|922379|scaffold_103660.1 1905 0.0
> Ahg922379 jgi|Araly1|922379|scaffold_103660.1
Length=1331
Score = 1905 bits (1031), Expect = 0.0
Identities = 1222/1314 (93%), Gaps = 14/1314 (1%)
Strand=Plus/Plus
Query 124 CAATGGAGCTTACCAGCTTCCATCGCTCTTCTCTCTTATTCCTCATCTCACTAACATTGA 183
||||| ||||||||| |||||| |||||||||||| |||||||| ||||| | || |
Sbjct 24 CAATGAAGCTTACCACCTTCCACCGCTCTTCTCTCATATTCCTCCTCTCAGTGAC---GG 80
Query 184 TCATTCTCCCGACGACAACAACTTCAATCGGAGTAAACTACGGTCAAATCGGAGACAACC 243
| || || ||| | || | ||||||||||||||||||||||||||||||||||||||
Sbjct 81 TTATCCTTCCGGCAACGGTGAGTTCAATCGGAGTAAACTACGGTCAAATCGGAGACAACC 140
Query 244 TCCCCTCCCCAACCGACGTAATCCCACTAATAAAATCAATCGGAGCAACAAAAGTAAAAC 303
| || || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 141 TACCATCACCATCCGACGTAATCCCACTAATAAAATCAATCGGTGCAACAAAAGTAAAAC 200
Query 304 TCTACGACGCAAATCCACAAATCCTCAAAGCTTTCTCCAACACCGGAATCGAATTCATCA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCTACGACGCAAATCCACAAATCCTCAAAGCTTTCTCCAACACCGGAATCGAATTCATCA 260
Query 364 TCGGACTCGGCAACGAATACCTCTCCAAAATGAAAGATCCTTCAAAAGC-CTTAACATGG 422
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 261 TCGGACTCGGCAACGAATATCTCTCCAAAATGAAAGATCCTTCAAAAGCACT-AACATGG 319
Query 423 ATCAAACAAAACGTTACTCCATTTTTACCTGCGACTAACATCACATGCATAACTATCGGT 482
||||||||||||||||||||||||||||| |||||||||||||| || || || |||||
Sbjct 320 ATCAAACAAAACGTTACTCCATTTTTACCGGCGACTAACATCACCTGTATCACAATCGGA 379
Query 483 AACGAAATCCTCGCTCTCAACGACTCTTCACTCACTACCAATCTCCTCCCAGCGATGCAA 542
||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||
Sbjct 380 AACGAAATCCTCGCTCTCAACGACTCTTCACTCACAATCAATCTCCTCTCGGCGATGCAA 439
Query 543 GGAGTTCACTCTGCTTTAATCACCGCCGGTCTCTCCGATCAAATCTCCGTCACCACCGCG 602
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 440 GGAGTTCACTCTGCTTTAATCACCGCCGGACTCTCCGATCAAATAACCGTCACCACCGCA 499
Query 603 CATTCTCTCTCGATCCTCAAATCCTCATTCCCACCTTCCGCCGGCGAGTTTCAACCGGAT 662
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 500 CATTCTCTCTCAATCCTCAAATCCTCATTCCCACCTTCCGCCGGCGAGTTTCAACCAGAT 559
Query 663 CTACTCGATTCGCTAACTCCGATCTTAGAATTTCACCGGAAAACTGATTCTCCGTTCTTA 722
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 560 CTACTCGATTCACTAACACCGATCTTAGAATTCCACCGGAAAACTGATTCTCCGTTCTTA 619
Query 723 ATCAACGCGTATCCTTTCTTCGCTTACAAAGGAAACCCTAAAGAAGTTCCTTTAGATTTC 782
||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct 620 ATCAACGCGTATCCTTTCTTCGCTTTCAAAGGAAACCCTAAAGAAGTACCTCTAGATTTC 679
Query 783 GTTCTGTTTCAACCTAATCAAGGAATCGTAGATCCGGCCACCGGTTTTCACTACGATAAC 842
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 680 GTTCTGTTTCAACCCAATCAAGGAATCGTAGATCCGGCCACCGGATTTCACTACGACAAC 739
Query 843 ATGTTGTTCGCTCAGATCGACGCTGTCTACTCTGCTTTAGCGGCGGCGGGGTTTAAATCG 902
|||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||
Sbjct 740 ATGTTGTTCGCTCAAATCGACGCCGTGTACTCTGCTTTAGCGGCGGCGGGGTATAAATCG 799
Query 903 TTGAGAGTTGAGATATCGGAGACTGGG-TGGCCATCGAAAGGTGACGACGATGAGGTCGG 961
||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||
Sbjct 800 TTGAGAGTTGAGATATCGGAGAC-GGGATGGCCGTCGAAAGGTGACGACGATGAGGTTGG 858
Query 962 AGCTACGCCGGAGAATGCGAAGAGGTATAACGGAAACTTGATTAAGATGATGATGAGTGG 1021
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 859 AGCTACGCCGGAGAATGCAAAGAGGTATAACGGAAACTTGATTAAGCTGATGATGAGTGG 918
Query 1022 TAAAAAGACTAAAACGCCCTTGAAGCCTAATAATGATCTAAGTATTTACGTTTTTGCCCT 1081
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 919 TAAAAAGACTAAAACGCCCCTGAAGCCTAACAATGATCTTAGTATTTACGTTTTTGCCCT 978
Query 1082 TTTTAATGAGAATTTGAAACCTGGTCCGACGTCGGAGAGGAATTATGGCTTGTTTAAACC 1141
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 979 TTTTAATGAGAATTTGAAACCTGGTCCGACGTCGGAGAGGAATTATGGGTTGTTTAAACC 1038
Query 1142 TGATGGGACTCAGGCTTATTCACTTGGGTTTGCTTTAAACGATGTCGTGAGAGGTGCTAG 1201
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1039 TGATGGGACTCAGGCTTATTCACTTGGGTTTGCTTTAAACGACGTCGTGAGAGGGGCTAG 1098
Query 1202 TGGTGGTGGTACCGGTGGTGG-G--AATAGTAGTAGCGGTGGAGGAAGGGATAAGTCACC 1258
|||||| ||| |||||| || | ||||||||||| |||||||||||||| ||| | ||
Sbjct 1099 TGGTGGCGGTGGCGGTGGCGGTGGCAATAGTAGTAGTGGTGGAGGAAGGGAAAAGACGCC 1158
Query 1259 GGTGTTTCCGGTTTCTCCGGTGGCCCCGGATAGTGCGTCCACTGGTTATTTAGCAATTTC 1318
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1159 GGTGTTTCCGGTTTCTCCGGTGGCGCCGGATAGTGCGTCCACTGGTTATTTGGCAATTTC 1218
Query 1319 GGCTTCTCCGGTAACGGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGT-G- 1376
|||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 1219 TGCTTCTCCAGTAACGGGGAGAAGAAAAGGGAAAGGGGCAATATTGTCAATGGTGGTAGT 1278
Query 1377 -AGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTCGAGTTTAACT 1429
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1279 GAGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTTGAGTT-AACT 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60144496855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5