BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32870.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473471 jgi|Araly1|473471|fgenesh2_kg.1__3425__AT1G32870.2 2111 0.0
> Ahg473471 jgi|Araly1|473471|fgenesh2_kg.1__3425__AT1G32870.2
Length=1659
Score = 2111 bits (1143), Expect = 0.0
Identities = 1478/1637 (90%), Gaps = 33/1637 (2%)
Strand=Plus/Plus
Query 60 AAAAGTGATGGACTTGTCGGTTGAGAACGGAGGTTTAGCTCCAGGTTTTAGGTTTCATCC 119
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 32 AAAAGTGATGGACTTGACGGTTGAGAACGGAGGTTTAGCACCAGGTTTTAGGTTTCATCC 91
Query 120 GACGGACGAAGAACTTGTCGTCTATTATCTCAAAAGAAAGATCCGTCGGAAAAAACTCAG 179
|||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||
Sbjct 92 GACGGACGAAGAACTTGTGGTCTATTACCTCAAGAGAAAGATTCGTCGGAAAAAACTCAG 151
Query 180 AGTCGAAGCAATCGGCGAGACTGATGTCTATAAGTTTGATCCTGAGGAATTACCTGAGAA 239
|||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 152 AGTCGATGCTATCGGCGAGACTGATGTCTACAAGTTTGATCCTGAGGAATTGCCTGAGAA 211
Query 240 AGCGTTGTATAAGACTAGAGATCGTCAATGGTTCTTTTTCAGCTTAAGGGATAGGAAACA 299
|||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 212 AGCGTTATATAAGACTAGGGATCGTCAGTGGTTCTTTTTCAGCTTGAGGGATAGGAAACA 271
Query 300 TGGAAGTAGGTCAAGTAGAGCTACTGAACGTGGCTATTGGAAAGCAACAGGGAAGGATAG 359
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 272 TGGAAGTAGGTCAAGTAGAGCTACTGACCGTGGCTATTGGAAAGCAACAGGGAAAGATAG 331
Query 360 AGTCATTCATTGTGATTCGAGAC-CCGTTGGAGAGAAGAAGACTCTTGTTTTCCATAGAG 418
||||||| | |||||||| | | |||||| ||||||||||| ||||||||||||||||
Sbjct 332 AGTCATTAAGTGTGATTCTCG-CAACGTTGGTGAGAAGAAGACGCTTGTTTTCCATAGAG 390
Query 419 GCAGGGCACCTAATGGCGAACGGACTAATTGGGTGATGCATGAGTATACATTGCACAAAG 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 391 GCAGGGCACCTAATGGTGAACGGACTAATTGGGTGATGCATGAGTATACATTGCATGAAG 450
Query 479 AGGAGCTCAAGAGGTGTGGTGGTGAAGATGTTAAGGATGCTTATGTTCTTTACAAGATTT 538
||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 451 AGGAGCTTAAGAGGTGTGGTGGTGGTGATGTTAAGGATGCTTTTGTTCTTTACAAGATTT 510
Query 539 ATAAGAAAAGTGGGTCTGGTCCTAAGAATGGTGAGCAATATGGAGCTCCTTTTATTGAAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ATAAGAAAAGTGGGTCTGGTCCTAAGAATGGTGAGCAATATGGAGCTCCTTTTATTGAAG 570
Query 599 AAGAATGGGCTG-A-A-gatgatga--t-gatga---tg-t--tg-a-t-ga-G--CCTG 640
|||||||||||| | | |||||||| | ||||| || | || | | || | || |
Sbjct 571 AAGAATGGGCTGAAGATGATGATGATGTCGATGAGCCTGCTGCTGTACTCGATGTTCCGG 630
Query 641 CTAATCAGCTCGTTGTTTCGGCTAGTGTTGATAATAGTTTATGGGGGAAAGGGCTTAACC 700
||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||
Sbjct 631 CTAATCAGCTCGTTGTTTCAGCTGGTGTCGATAATAATTTATGGGGGAAAGGGCTTAACC 690
Query 701 AATCTGAATTGGATGATAATGATATTGAAGAGCTGATGAGTCAGGTTAGAGATCAGTCTG 760
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct 691 AATCTGAATTGGATGATAATGATATCGAAGAGCTGATGAGACAGGTTAGAGATCAGCCTG 750
Query 761 GTCCAACATTGCAGCAGAATGGGGTGTCTGGACTGAACTCTCATGTAGACACGTATAAT- 819
||| |||| ||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 751 GTCGAACAGTGCAGCAGAATGGGGTGTCTGGACTGAACTCTCATGTCGAAACATATAATG 810
Query 820 CTGGAGAACCTGGAGGAAGATATGTATTTGGAAATCAATGATCTTATGGAACCTGAACCT 879
| || || |||||||| |||||||||||||||||| |||||||| || |||||||||
Sbjct 811 C-GGTCAATCTGGAGGACGATATGTATTTGGAAATCGATGATCTTTTGCTCCCTGAACCT 869
Query 880 GAACCAACTTCTGTGGAAGTCATGGAGAATAACTGGAACGAGGATGGTTCTGGTCTCCTG 939
|||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct 870 GAACCAGCTTCTGTGGAAGTCATGGAGAAGAACTGGAACCAGGATGGTTCTGGTGTCCTG 929
Query 940 AATGATGATGATTTCGTTGGTGCTGATTCATATTTCCTTGATTTGGGAGTGACAAATCCT 999
|||||| |||||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 930 AATGATAATGATTTCGTTGATACTGATTCATATTTCCTTGATTTGGGAGCGACAAATCCT 989
Query 1000 CAGTTAGATTTTGTTAGTGGTGATTTGAAAAATGGGTTTGCACAAAGTCTTCAGGTGAAT 1059
|||| |||| ||| | || || ||||||||||||||| ||||||||||||||||||||
Sbjct 990 CAGTCAGATCCTGTCACTGTTGGTTTGAAAAATGGGTTCGCACAAAGTCTTCAGGTGAAC 1049
Query 1060 ACTTCTTTAATGACT-TACCAGGCCAATAATAACCAGTTCCAGCAGCA-ATCAGGGAAGA 1117
|||||||| ||| | |||||||||||||||||| |||||||||||| | |||||||||
Sbjct 1050 ACTTCTTTGGTGA-TCGACCAGGCCAATAATAACCTGTTCCAGCAGCACA-CAGGGAAGA 1107
Query 1118 ACCAAGCTAGTAACTGGCCACTCCGTAACAGCTATACCAGACAGATAAACAATGGATCAT 1177
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1108 ACCAAGCTAGCAACTGGCCACTTCGTAACAGCTATACCAGACAGATAAACAATGGATCAT 1167
Query 1178 CGTGGGTGCAGGAGCTAAACAATGACGGACTTACCGTTACCCGGTTTGGTGAGGCGCCTG 1237
| ||| |||||||| |||| ||||||||||| | || ||||| |||||||| |||||||
Sbjct 1168 CTTGGATGCAGGAGATAAATAATGACGGACTAAACGCTACCCCATTTGGTGAAGCGCCTG 1227
Query 1238 GTACAGGTGATTCATCTGAATTCCTAAACCCTGTTCCTTCTGGTATAAGTACAACTAATG 1297
||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| |
Sbjct 1228 GTACAGGTGATGCATCTGAATTCATAAACCCTCTTACTTCTGGTGTAAGTATAACTAAGG 1287
Query 1298 AAGATGACCCGTCAAAAGACGAGTCTAGTAAGTTTGCTTCTAGTGTATGGACTTTCCTGG 1357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 AAGATGACGCGTCAAAAGACGAGTCTAGTAAGTTTGCTTCTAGTGTATGGACTTTCCTGG 1347
Query 1358 AATCCATTCCTGCAAAGCCAGCATATGCATCAGAGAATCCATTTGTGAAGCTGAACCTTG 1417
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1348 AATCCATTCCTGCAAATCCAGCATATGCTTCAGAGAATCCATTTGTTAAGCTGAACCTTG 1407
Query 1418 TTAGAATGTCAACCAGTGGTGGTCGTTTCAGGTTTACTTCTAAAAGCACAGGTAATAATG 1477
| |||||||||| || ||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1408 TCAGAATGTCAAGCAATGGTGGTCGTTTCAGGTTTGCTTCTAAGAGCACAGGTAACAATG 1467
Query 1478 TTGT-TGTTATGGATAGTGACTCAGCAGTGAAGAGGAACAAGTCTGGAGGAAACAACGAT 1536
|| | ||| | | || || ||||| | |||||||| |||| |||||||||||||||
Sbjct 1468 TT-TCTGTCACAGCTAACGATTCAGCGGCAAAGAGGAAGAAGTATGGAGGAAACAACGAC 1526
Query 1537 aagaagaagaagaagaaCAAAGGTTTCTTTTGCTTATCGATCATTGGGGCTTTATGTGCT 1596
||||||||||| || |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1527 AAGAAGAAGAACAA---CAAAGGTTTCTTCTGCTTATCGATCATTGGGGCGCTATGTGCT 1583
Query 1597 TTGTTTTGGGTGATCATAGGAACAATGGGAGGTT-CAGGGAGGCCTTTGTTATGGTGAGA 1655
|| |||||||||||||||||||||||||| |||| |||||||| || | || ||||||||
Sbjct 1584 TTATTTTGGGTGATCATAGGAACAATGGG-GGTTTCAGGGAGGTCTCTATTGTGGTGAGA 1642
Query 1656 ACCGAAAAATCCAAGAG 1672
||| |||| ||||||||
Sbjct 1643 ACCCAAAAGTCCAAGAG 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5