BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32910.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473473 jgi|Araly1|473473|fgenesh2_kg.1__3427__AT1G32910.1 900 0.0
Ahg893553 jgi|Araly1|893553|Al_scaffold_0006_1549 287 2e-76
> Ahg473473 jgi|Araly1|473473|fgenesh2_kg.1__3427__AT1G32910.1
Length=1299
Score = 900 bits (487), Expect = 0.0
Identities = 585/633 (92%), Gaps = 4/633 (1%)
Strand=Plus/Plus
Query 182 TGGCTGAAACCCTAAAAGCGTCTTTGGCTGAGGCTCTCGTCTCCTACTATGCCTTTGCCG 241
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |
Sbjct 131 TGGCTGAAACCCTAAAAGCTTCCTTGGCTGAGGCTCTCGTCTCCTACTACGCCTTTGCTG 190
Query 242 GTGAACTCGTGAAAAACTCCTCTGGAGAACCCGAGATTCTCTGCAACAACCGCGGCGTAG 301
| |||||||||||||||||| | |||||||| |||||||||||||| ||||| ||||| |
Sbjct 191 GCGAACTCGTGAAAAACTCCGCCGGAGAACCAGAGATTCTCTGCAATAACCGTGGCGTGG 250
Query 302 ACTTCCTTGAGGCGGTTGCTGACGTGGAGCTCCGGGAGCTTAACTTGCATGATCCTGATG 361
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 251 ACTTCCTTGAGGCGCTTGCTGATGTGGAGCTCCGAGAGCTTAACTTGCATGATCCTGATG 310
Query 362 AAAGTATCGCCAAGCTTGTTCCGAAGAAGAAGCATGGAGTTATAGCTATTCAGGTAACTC 421
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 311 AAAGTATCGCCAAGCTTGTTCCGAAGAAGAAGCATGGAGTCCTAGCTATTCAGGTCACTC 370
Query 422 AACTTAAATGTGGGAGCATAGTGGTAGGATGCACATTTGATCATCGA-ATTGCAGATGCT 480
||||||||||||||||||||||||| |||||||||||||||||| || || |||||||||
Sbjct 371 AACTTAAATGTGGGAGCATAGTGGTTGGATGCACATTTGATCAT-GAGATAGCAGATGCT 429
Query 481 TTCTCCATGAACATGTTCCTTGTTTCTTGGGCTGAGATCTCTAGATTCAATGCACCAATC 540
|||||||||||||||||||| ||||||||||||||||||||| ||| | ||| |||||||
Sbjct 430 TTCTCCATGAACATGTTCCTCGTTTCTTGGGCTGAGATCTCTCGATCCGATGTACCAATC 489
Query 541 TCTTCTGTCCCATCGTTCCGGAGATCTATACTAAACCCGCGACGACCACTGATTATCGAC 600
|||| ||||||||||||| ||||||| || || |||||||||||||| |||||||||||
Sbjct 490 TCTTATGTCCCATCGTTCTGGAGATCAATGCTGAACCCGCGACGACCTTTGATTATCGAC 549
Query 601 TCATCTATAGACAAGATGTATATGCCTGTCACGTCTTTGCCCCTTCCACAAGAAACAACA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TCATCTATAGACAAGATGTATATGCCTGTCACGTCTTTGCCCCTTCCACAAGAAACAACC 609
Query 661 AATGACCTAGATAATATCCTCACAAGCCGTATCTATTACATCAAAGAAAATGCGTTGGAA 720
||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 610 AATGACCCAGATAATATTCTCACAAGCCGTATCTACTACATCAAAGGAAATGCGTTGGAA 669
Query 721 GATCTCCAAAC-TCTAGCAAGCGGTAGCTCCCCCAAGACTGGTTATGGTCAGAGGACGAA 779
||||||||| | ||| |||||| | |||||| |||||| ||||||| |||||||||| ||
Sbjct 670 GATCTCCAA-CGTCTTGCAAGCAGCAGCTCCTCCAAGAATGGTTATAGTCAGAGGACAAA 728
Query 780 ACTAGAGTCGTTCAGCGCGTTTCTATGGAAACT 812
||| |||||||||||||||||||||||||||||
Sbjct 729 ACTCGAGTCGTTCAGCGCGTTTCTATGGAAACT 761
Score = 750 bits (406), Expect = 0.0
Identities = 495/538 (92%), Gaps = 6/538 (1%)
Strand=Plus/Plus
Query 852 GAACTCGAAAATGGGTATTGTTGTCGACGGAAGGAGAAGACTTATGGAGAAAGAAGACAA 911
||| |||||||||||||| || || || ||||||||||||||||||||||||||| |||
Sbjct 762 GAAATCGAAAATGGGTATCGTCGTTGATGGAAGGAGAAGACTTATGGAGAAAGAAAACAG 821
Query 912 CACTTACTTTGGAAACGTTCTTTCCATCCCATTTGGTGGACAGAGTATCGATGACTTGAT 971
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 822 CACTTACTTTGGAAACGTTCTTTCCATCCCATTTGGTGGGCACAGTATCAATGACTTGAT 881
Query 972 TGACAAGCCATTGTCTTGGGTGACCAACGAAGTTCACAGATTCTTGGAAGAAGCAGTGAC 1031
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 882 TGACAAGCCATTGTCTTGGGTGAGCAACGAAGTTCACAAATTCTTGGAAGAAGCAGTGAC 941
Query 1032 CAAAGAACATTTCTTAAACTTGATTGATTGGGTTGAGATTCACCGCCCGATACCGGCAGT 1091
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 942 AAAAGATCATTTCTTAAACTTGATCGATTGGGTTGAGATTCACCGCCCGATACCGGCATT 1001
Query 1092 GTCGAGGATCTATAGTACGGGAACCGACGATGGACCAGCTTTTGTGGTCTCCTCCGGGAG 1151
|||||||||||||||||| ||| || || ||||||| ||||||||||| |||||| |
Sbjct 1002 GTCGAGGATCTATAGTACCGGAGCCAACTATGGACCCGCTTTTGTGGTTTCCTCC----G 1057
Query 1152 GAGTTTTCCGGTGAACAAGGTTGATTTCGGTTGGGGCTTACCGGTTTTTGGGTCATACCA 1211
| | |||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct 1058 G-G-TTTCCGGTGACCAAGGTGGATTTCGGTTGGGGCTTACCGGTTATTGGGTCCTACCA 1115
Query 1212 TTTCCCATGGGAGGGAAGCTCCGGATATGTGATGCCGATGCCGAGTCCGGTGGACGACGG 1271
|||||||||||| || ||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 1116 TTTCCCATGGGAAGGCAGCGCCGGATATGTGATGCCAATGCCGAGTCCCGTGGACGACGG 1175
Query 1272 GAACGGAGATTGGGTGGTTTACTTGCATCTTACGAAAGGACAGTTAAAGTTCATTGAGGA 1331
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1176 GGACGGAGATTGGGTGGTTTACTTGCATCTTACGAAAGGACAGTTAAAGTTCATTGAAGA 1235
Query 1332 GGAGGCTTCCCATGTGCTTAAACCCATAGACAATTATTATCTCAAGATTAACACCATC 1389
||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 1236 GGAGGTTTCCCATGTGCTTAAACCCATAGACAATGACTATCTCAAGATTAACGCCATC 1293
Score = 128 bits (69), Expect = 1e-28
Identities = 119/141 (84%), Gaps = 11/141 (8%)
Strand=Plus/Plus
Query 1 ATGGAAGATGCAGCGGAGCAAGAACGTGGTTTCCACGTGATCACCATAAGGAAGCAGATA 60
|||| |||||| |||||||||| |||| |||||||||||| ||||| |||| ||||| |
Sbjct 1 ATGGGAGATGCGGCGGAGCAAGCACGTAGTTTCCACGTGACCACCACAAGGGAGCAGGTT 60
Query 61 GTCACGGCTGCTCTTCCCCTCCAAGACCATTGGCTTCCTCTTTCAAACCTCGACCTCCTC 120
|||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GTCACGGCTG-----------CAAGACCATTGGCTTCCTCTTTCAAACCTCGATCTCCTC 109
Query 121 CTCCCTCCTGTCCAAATCAGC 141
|||||||||||||| ||||||
Sbjct 110 CTCCCTCCTGTCCACATCAGC 130
> Ahg893553 jgi|Araly1|893553|Al_scaffold_0006_1549
Length=990
Score = 287 bits (155), Expect = 2e-76
Identities = 450/583 (77%), Gaps = 57/583 (10%)
Strand=Plus/Plus
Query 575 ACCCGCGACGACC--ACTGATTATCGACTCATCTATAGA-CAAGATGTATATGCCTGTCA 631
|||| |||||||| |||| ||||||||||| ||||| ||| |||| |||||| | |
Sbjct 408 ACCCACGACGACCTTTTTGATCATCGACTCATCAATAGACCAA-TTGTACATGCCTATAA 466
Query 632 CGTCTTTGCCCCTTCCACAAGAAA-CAACAAATGACCTAGATAATATCCTCACAAGCCGT 690
|||| ||| || |||||||||||| | || ||| || ||||||||||||||||||||||
Sbjct 467 CGTCCTTGACCGTTCCACAAGAAATC-ACTAAT--CC-AGATAATATCCTCACAAGCCGT 522
Query 691 ATCTATTACATCAAAGAAAATG-CGTTGGAAGATCTCCAAACTCTAGCAAGCGGTAGCTC 749
|||||||||||||||| | ||| | || ||| | || |||||||| | || ||||
Sbjct 523 ATCTATTACATCAAAGCAGATGTC-TTAGAAAAGCTTCAAACTCT-G---GC--TAGC-- 573
Query 750 CCCCAAGACTGGTTATGGTCAGAGGACGAAACTAGAGTCGTTCAGCGCGTTTCTATGGAA 809
|| |||| | | ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 574 ----AA---TGGTAA-G---AGA--ACGAAACTGGAGTCTTTCAGCGCGTTTCTATGGAA 620
Query 810 ACT-TGTGGCGAAACACACAGGAAGAGAT-C--TAGTT-TCGAAC-AAGAACTCGAAAAT 863
||| | | || |||||| | | || |||| | || | | || | || ||||||||| |
Sbjct 621 ACTCT-TAGCTAAACACGCTGCAACAGATTCGGTACTCCT-GA-CTAAAAACTCGAAACT 677
Query 864 GGGTATTGTTGTCGACGGAAGGA-GAAGACTTATGGAGAAAGAAGACAACA-C--TTACT 919
|| || ||||| |||||||||| ||| |||||||||| ||||||| ||| | |||||
Sbjct 678 TGGCATCGTTGTTGACGGAAGGAAGAA-ACTTATGGAGCAAGAAGAAAACTGCAATTACT 736
Query 920 TTGGAAACGTTCTTTCCATCCCATTTGGTG-GACAGAGTATCGATGACTTGATTGACAAG 978
|||| || | || || | |||||||| | | ||||| |||||||||||||| |||||
Sbjct 737 TTGGGAATATCCTCTCGGTTCCATTTGGAGAG-CAGAGAATCGATGACTTGATCCACAAG 795
Query 979 CCATTGTCTTGGGTGACCAACGAAGTTCACA-GATT-CTTGGA-AGAAGCAGTGACCAAA 1035
||||||||||||||||| |||| ||||||| | || || ||| || | || ||||||||
Sbjct 796 CCATTGTCTTGGGTGACTGACGAGGTTCACAAG-TTACT-GGAGAGTA-CAATGACCAAA 852
Query 1036 GAACATTTCTTAAACTTGATTGATTGGGTTGAGATTCACCGCCCGATACCGGC-AGTGTC 1094
|| |||||||| |||||||| |||||| |||||| || ||| |||||||| | | | ||
Sbjct 853 GATCATTTCTTGAACTTGATCGATTGGATTGAGACTCGCCGTCCGATACCAGTTA-TATC 911
Query 1095 GAGGATCTATAGTACGGGAACCGACGATGGACCAGCTTT-TGT 1136
||||| || |||| ||| | ||||||| || ||||| |||
Sbjct 912 AAGGATATACGGTACTGGATTCAACGATGGGCCTGCTTTCTGT 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5