BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32910.1 Length=1395 Score E Sequences producing significant alignments: (Bits) Value Ahg473473 jgi|Araly1|473473|fgenesh2_kg.1__3427__AT1G32910.1 900 0.0 Ahg893553 jgi|Araly1|893553|Al_scaffold_0006_1549 287 2e-76 > Ahg473473 jgi|Araly1|473473|fgenesh2_kg.1__3427__AT1G32910.1 Length=1299 Score = 900 bits (487), Expect = 0.0 Identities = 585/633 (92%), Gaps = 4/633 (1%) Strand=Plus/Plus Query 182 TGGCTGAAACCCTAAAAGCGTCTTTGGCTGAGGCTCTCGTCTCCTACTATGCCTTTGCCG 241 ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| | Sbjct 131 TGGCTGAAACCCTAAAAGCTTCCTTGGCTGAGGCTCTCGTCTCCTACTACGCCTTTGCTG 190 Query 242 GTGAACTCGTGAAAAACTCCTCTGGAGAACCCGAGATTCTCTGCAACAACCGCGGCGTAG 301 | |||||||||||||||||| | |||||||| |||||||||||||| ||||| ||||| | Sbjct 191 GCGAACTCGTGAAAAACTCCGCCGGAGAACCAGAGATTCTCTGCAATAACCGTGGCGTGG 250 Query 302 ACTTCCTTGAGGCGGTTGCTGACGTGGAGCTCCGGGAGCTTAACTTGCATGATCCTGATG 361 |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 251 ACTTCCTTGAGGCGCTTGCTGATGTGGAGCTCCGAGAGCTTAACTTGCATGATCCTGATG 310 Query 362 AAAGTATCGCCAAGCTTGTTCCGAAGAAGAAGCATGGAGTTATAGCTATTCAGGTAACTC 421 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 311 AAAGTATCGCCAAGCTTGTTCCGAAGAAGAAGCATGGAGTCCTAGCTATTCAGGTCACTC 370 Query 422 AACTTAAATGTGGGAGCATAGTGGTAGGATGCACATTTGATCATCGA-ATTGCAGATGCT 480 ||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||| Sbjct 371 AACTTAAATGTGGGAGCATAGTGGTTGGATGCACATTTGATCAT-GAGATAGCAGATGCT 429 Query 481 TTCTCCATGAACATGTTCCTTGTTTCTTGGGCTGAGATCTCTAGATTCAATGCACCAATC 540 |||||||||||||||||||| ||||||||||||||||||||| ||| | ||| ||||||| Sbjct 430 TTCTCCATGAACATGTTCCTCGTTTCTTGGGCTGAGATCTCTCGATCCGATGTACCAATC 489 Query 541 TCTTCTGTCCCATCGTTCCGGAGATCTATACTAAACCCGCGACGACCACTGATTATCGAC 600 |||| ||||||||||||| ||||||| || || |||||||||||||| ||||||||||| Sbjct 490 TCTTATGTCCCATCGTTCTGGAGATCAATGCTGAACCCGCGACGACCTTTGATTATCGAC 549 Query 601 TCATCTATAGACAAGATGTATATGCCTGTCACGTCTTTGCCCCTTCCACAAGAAACAACA 660 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 TCATCTATAGACAAGATGTATATGCCTGTCACGTCTTTGCCCCTTCCACAAGAAACAACC 609 Query 661 AATGACCTAGATAATATCCTCACAAGCCGTATCTATTACATCAAAGAAAATGCGTTGGAA 720 ||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||||||||| Sbjct 610 AATGACCCAGATAATATTCTCACAAGCCGTATCTACTACATCAAAGGAAATGCGTTGGAA 669 Query 721 GATCTCCAAAC-TCTAGCAAGCGGTAGCTCCCCCAAGACTGGTTATGGTCAGAGGACGAA 779 ||||||||| | ||| |||||| | |||||| |||||| ||||||| |||||||||| || Sbjct 670 GATCTCCAA-CGTCTTGCAAGCAGCAGCTCCTCCAAGAATGGTTATAGTCAGAGGACAAA 728 Query 780 ACTAGAGTCGTTCAGCGCGTTTCTATGGAAACT 812 ||| ||||||||||||||||||||||||||||| Sbjct 729 ACTCGAGTCGTTCAGCGCGTTTCTATGGAAACT 761 Score = 750 bits (406), Expect = 0.0 Identities = 495/538 (92%), Gaps = 6/538 (1%) Strand=Plus/Plus Query 852 GAACTCGAAAATGGGTATTGTTGTCGACGGAAGGAGAAGACTTATGGAGAAAGAAGACAA 911 ||| |||||||||||||| || || || ||||||||||||||||||||||||||| ||| Sbjct 762 GAAATCGAAAATGGGTATCGTCGTTGATGGAAGGAGAAGACTTATGGAGAAAGAAAACAG 821 Query 912 CACTTACTTTGGAAACGTTCTTTCCATCCCATTTGGTGGACAGAGTATCGATGACTTGAT 971 ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| Sbjct 822 CACTTACTTTGGAAACGTTCTTTCCATCCCATTTGGTGGGCACAGTATCAATGACTTGAT 881 Query 972 TGACAAGCCATTGTCTTGGGTGACCAACGAAGTTCACAGATTCTTGGAAGAAGCAGTGAC 1031 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 882 TGACAAGCCATTGTCTTGGGTGAGCAACGAAGTTCACAAATTCTTGGAAGAAGCAGTGAC 941 Query 1032 CAAAGAACATTTCTTAAACTTGATTGATTGGGTTGAGATTCACCGCCCGATACCGGCAGT 1091 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 942 AAAAGATCATTTCTTAAACTTGATCGATTGGGTTGAGATTCACCGCCCGATACCGGCATT 1001 Query 1092 GTCGAGGATCTATAGTACGGGAACCGACGATGGACCAGCTTTTGTGGTCTCCTCCGGGAG 1151 |||||||||||||||||| ||| || || ||||||| ||||||||||| |||||| | Sbjct 1002 GTCGAGGATCTATAGTACCGGAGCCAACTATGGACCCGCTTTTGTGGTTTCCTCC----G 1057 Query 1152 GAGTTTTCCGGTGAACAAGGTTGATTTCGGTTGGGGCTTACCGGTTTTTGGGTCATACCA 1211 | | |||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||| Sbjct 1058 G-G-TTTCCGGTGACCAAGGTGGATTTCGGTTGGGGCTTACCGGTTATTGGGTCCTACCA 1115 Query 1212 TTTCCCATGGGAGGGAAGCTCCGGATATGTGATGCCGATGCCGAGTCCGGTGGACGACGG 1271 |||||||||||| || ||| |||||||||||||||| ||||||||||| ||||||||||| Sbjct 1116 TTTCCCATGGGAAGGCAGCGCCGGATATGTGATGCCAATGCCGAGTCCCGTGGACGACGG 1175 Query 1272 GAACGGAGATTGGGTGGTTTACTTGCATCTTACGAAAGGACAGTTAAAGTTCATTGAGGA 1331 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1176 GGACGGAGATTGGGTGGTTTACTTGCATCTTACGAAAGGACAGTTAAAGTTCATTGAAGA 1235 Query 1332 GGAGGCTTCCCATGTGCTTAAACCCATAGACAATTATTATCTCAAGATTAACACCATC 1389 ||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||| Sbjct 1236 GGAGGTTTCCCATGTGCTTAAACCCATAGACAATGACTATCTCAAGATTAACGCCATC 1293 Score = 128 bits (69), Expect = 1e-28 Identities = 119/141 (84%), Gaps = 11/141 (8%) Strand=Plus/Plus Query 1 ATGGAAGATGCAGCGGAGCAAGAACGTGGTTTCCACGTGATCACCATAAGGAAGCAGATA 60 |||| |||||| |||||||||| |||| |||||||||||| ||||| |||| ||||| | Sbjct 1 ATGGGAGATGCGGCGGAGCAAGCACGTAGTTTCCACGTGACCACCACAAGGGAGCAGGTT 60 Query 61 GTCACGGCTGCTCTTCCCCTCCAAGACCATTGGCTTCCTCTTTCAAACCTCGACCTCCTC 120 |||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 61 GTCACGGCTG-----------CAAGACCATTGGCTTCCTCTTTCAAACCTCGATCTCCTC 109 Query 121 CTCCCTCCTGTCCAAATCAGC 141 |||||||||||||| |||||| Sbjct 110 CTCCCTCCTGTCCACATCAGC 130 > Ahg893553 jgi|Araly1|893553|Al_scaffold_0006_1549 Length=990 Score = 287 bits (155), Expect = 2e-76 Identities = 450/583 (77%), Gaps = 57/583 (10%) Strand=Plus/Plus Query 575 ACCCGCGACGACC--ACTGATTATCGACTCATCTATAGA-CAAGATGTATATGCCTGTCA 631 |||| |||||||| |||| ||||||||||| ||||| ||| |||| |||||| | | Sbjct 408 ACCCACGACGACCTTTTTGATCATCGACTCATCAATAGACCAA-TTGTACATGCCTATAA 466 Query 632 CGTCTTTGCCCCTTCCACAAGAAA-CAACAAATGACCTAGATAATATCCTCACAAGCCGT 690 |||| ||| || |||||||||||| | || ||| || |||||||||||||||||||||| Sbjct 467 CGTCCTTGACCGTTCCACAAGAAATC-ACTAAT--CC-AGATAATATCCTCACAAGCCGT 522 Query 691 ATCTATTACATCAAAGAAAATG-CGTTGGAAGATCTCCAAACTCTAGCAAGCGGTAGCTC 749 |||||||||||||||| | ||| | || ||| | || |||||||| | || |||| Sbjct 523 ATCTATTACATCAAAGCAGATGTC-TTAGAAAAGCTTCAAACTCT-G---GC--TAGC-- 573 Query 750 CCCCAAGACTGGTTATGGTCAGAGGACGAAACTAGAGTCGTTCAGCGCGTTTCTATGGAA 809 || |||| | | ||| |||||||| ||||| |||||||||||||||||||| Sbjct 574 ----AA---TGGTAA-G---AGA--ACGAAACTGGAGTCTTTCAGCGCGTTTCTATGGAA 620 Query 810 ACT-TGTGGCGAAACACACAGGAAGAGAT-C--TAGTT-TCGAAC-AAGAACTCGAAAAT 863 ||| | | || |||||| | | || |||| | || | | || | || ||||||||| | Sbjct 621 ACTCT-TAGCTAAACACGCTGCAACAGATTCGGTACTCCT-GA-CTAAAAACTCGAAACT 677 Query 864 GGGTATTGTTGTCGACGGAAGGA-GAAGACTTATGGAGAAAGAAGACAACA-C--TTACT 919 || || ||||| |||||||||| ||| |||||||||| ||||||| ||| | ||||| Sbjct 678 TGGCATCGTTGTTGACGGAAGGAAGAA-ACTTATGGAGCAAGAAGAAAACTGCAATTACT 736 Query 920 TTGGAAACGTTCTTTCCATCCCATTTGGTG-GACAGAGTATCGATGACTTGATTGACAAG 978 |||| || | || || | |||||||| | | ||||| |||||||||||||| ||||| Sbjct 737 TTGGGAATATCCTCTCGGTTCCATTTGGAGAG-CAGAGAATCGATGACTTGATCCACAAG 795 Query 979 CCATTGTCTTGGGTGACCAACGAAGTTCACA-GATT-CTTGGA-AGAAGCAGTGACCAAA 1035 ||||||||||||||||| |||| ||||||| | || || ||| || | || |||||||| Sbjct 796 CCATTGTCTTGGGTGACTGACGAGGTTCACAAG-TTACT-GGAGAGTA-CAATGACCAAA 852 Query 1036 GAACATTTCTTAAACTTGATTGATTGGGTTGAGATTCACCGCCCGATACCGGC-AGTGTC 1094 || |||||||| |||||||| |||||| |||||| || ||| |||||||| | | | || Sbjct 853 GATCATTTCTTGAACTTGATCGATTGGATTGAGACTCGCCGTCCGATACCAGTTA-TATC 911 Query 1095 GAGGATCTATAGTACGGGAACCGACGATGGACCAGCTTT-TGT 1136 ||||| || |||| ||| | ||||||| || ||||| ||| Sbjct 912 AAGGATATACGGTACTGGATTCAACGATGGGCCTGCTTTCTGT 954 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52145545405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5