BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32920.1

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922385 jgi|Araly1|922385|scaffold_103666.1                        394    3e-109


> Ahg922385 jgi|Araly1|922385|scaffold_103666.1
Length=309

 Score =  394 bits (213),  Expect = 3e-109
 Identities = 278/309 (90%), Gaps = 6/309 (2%)
 Strand=Plus/Plus

Query  69   tctcttcttttcttttctATTTGATCATGAATTCTATGTTCAGTGCCTTCGACGCTCTCT  128
            |||||||| || |||| |||| ||| |||||||||||||| |||||||||||||||||||
Sbjct  1    TCTCTTCTCTTATTTTTTATTCGATAATGAATTCTATGTTTAGTGCCTTCGACGCTCTCT  60

Query  129  TCGCAGAGGTCATGGGAAAGAACCTTATGGCTTCTTCGTTTACTGCTACTACCGCAACAA  188
            |||||||  |||||||||||||||||||||||||| |||||| |||||||||||| ||  
Sbjct  61   TCGCAGAACTCATGGGAAAGAACCTTATGGCTTCTCCGTTTAATGCTACTACCGCCACGG  120

Query  189  CCAAACCTGCCGCC---GCGC---CGCAAACACAAACGCAGGAGAAGGCAAACGCAAGTA  242
            ||||||| ||||||    |||   ||||||| ||||||||| |||||| |||||||||||
Sbjct  121  CCAAACCAGCCGCCATACCGCAAACGCAAACGCAAACGCAGAAGAAGGAAAACGCAAGTA  180

Query  243  GCAAGAAGATAGGTTTGGTGCAGAAGATTCCGAGGTTTGCTTTGGAGCTTGATGGTCTTC  302
            |||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct  181  GCAAGAAGGTTGGTTTGGTGCAAAAGACTCCGAGGTTTGCTTTGGAGCTTGATGGTCTTC  240

Query  303  ACTGCTTCGAAACAATAGTCCGTTCTTGATTTGATTCGTTCTTGGTTCTTGGCTTCAAGA  362
            ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||
Sbjct  241  ACTGCTTCGAAACAATAATCCGTTCTTGATTTGATTTGTTCTTGGTTCTTGGTTTCAAGA  300

Query  363  TCAGAAACT  371
            |||||||||
Sbjct  301  TCAGAAACT  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18009438008


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5