BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32920.1 Length=496 Score E Sequences producing significant alignments: (Bits) Value Ahg922385 jgi|Araly1|922385|scaffold_103666.1 394 3e-109 > Ahg922385 jgi|Araly1|922385|scaffold_103666.1 Length=309 Score = 394 bits (213), Expect = 3e-109 Identities = 278/309 (90%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 69 tctcttcttttcttttctATTTGATCATGAATTCTATGTTCAGTGCCTTCGACGCTCTCT 128 |||||||| || |||| |||| ||| |||||||||||||| ||||||||||||||||||| Sbjct 1 TCTCTTCTCTTATTTTTTATTCGATAATGAATTCTATGTTTAGTGCCTTCGACGCTCTCT 60 Query 129 TCGCAGAGGTCATGGGAAAGAACCTTATGGCTTCTTCGTTTACTGCTACTACCGCAACAA 188 ||||||| |||||||||||||||||||||||||| |||||| |||||||||||| || Sbjct 61 TCGCAGAACTCATGGGAAAGAACCTTATGGCTTCTCCGTTTAATGCTACTACCGCCACGG 120 Query 189 CCAAACCTGCCGCC---GCGC---CGCAAACACAAACGCAGGAGAAGGCAAACGCAAGTA 242 ||||||| |||||| ||| ||||||| ||||||||| |||||| ||||||||||| Sbjct 121 CCAAACCAGCCGCCATACCGCAAACGCAAACGCAAACGCAGAAGAAGGAAAACGCAAGTA 180 Query 243 GCAAGAAGATAGGTTTGGTGCAGAAGATTCCGAGGTTTGCTTTGGAGCTTGATGGTCTTC 302 |||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 181 GCAAGAAGGTTGGTTTGGTGCAAAAGACTCCGAGGTTTGCTTTGGAGCTTGATGGTCTTC 240 Query 303 ACTGCTTCGAAACAATAGTCCGTTCTTGATTTGATTCGTTCTTGGTTCTTGGCTTCAAGA 362 ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| Sbjct 241 ACTGCTTCGAAACAATAATCCGTTCTTGATTTGATTTGTTCTTGGTTCTTGGTTTCAAGA 300 Query 363 TCAGAAACT 371 ||||||||| Sbjct 301 TCAGAAACT 309 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18009438008 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5