BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32928.1 Length=599 Score E Sequences producing significant alignments: (Bits) Value Ahg473474 jgi|Araly1|473474|fgenesh2_kg.1__3428__AT1G32928.1 569 6e-162 > Ahg473474 jgi|Araly1|473474|fgenesh2_kg.1__3428__AT1G32928.1 Length=485 Score = 569 bits (308), Expect = 6e-162 Identities = 434/489 (89%), Gaps = 32/489 (7%) Strand=Plus/Plus Query 127 ATAATGAATTCGATGTTTAGTGCCTTCGACGCCATGTGTGCAGAGATTATGGGAAAGAAA 186 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 12 ATAATGAATTCGATGTTTAGTGCCTTTGACGCCATGTGTGCAGAGATTATGGGTAAGAAA 71 Query 187 GTCACCGCTGCTTCTTATGTCTACCGCTCTGAACGCAATTCTGCTTCTTCTTCTTCTTCC 246 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 72 GTCACCGCTGCTTCTTATGTCTACCGCTCTGAACGCAATTCTG------CTTCTTCTTCC 125 Query 247 GTCGGCGGTCAAAACGCGTCTTTGTCTCTCAAGAAAGATGAAAAAGCTTCAAAGAACATG 306 | |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| Sbjct 126 GGCGGCGGTCAAAACGCGTCTTTGTCGCTCAAGAAAGATGAACAAGCTTCCAAGAACATG 185 Query 307 GATTTACCAACGAAGACACCGAGGTTTGCTCTTGAGCTCGATGGTCTTCATTGCTTCGAG 366 |||||||| || |||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 186 GATTTACCGACCAAGACACCGAGGTTTGCTCTTGAGCTTGATGGACTTAATTGCTTCGAG 245 Query 367 ACTATAGTTCGTTCTTGATCAATATCAAGATTACCAATTTTTGCTGAGtttttttttctt 426 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || Sbjct 246 ACTATAGTTCGTTCTTGATCAATATCAAGATTACGAATTTTTGCTGAGTTTTTTCTT-TT 304 Query 427 tttcttgtt-ttgttctgtttcgattccttttATGTAAATACAATTTTGGAAGATTTAAT 485 || || || |||||||| ||||||||||||||||||||||||||||| ||| ||| Sbjct 305 GTT-TT-TTCTTGTTCTG-----ATTCCTTTTATGTAAATACAATTTTGGAAAATTCAAT 357 Query 486 TT-CTTGATTAGAATCATCATCCTTATGTGATT-TG-A-TT-C-A-T--C--GT-TTCTG 533 || |||||||| |||||||||| |||||||||| | | || | | | | || ||||| Sbjct 358 TTTCTTGATTACAATCATCATCATTATGTGATTGTTTAATTTCGAATTACTCGTGTTCTG 417 Query 534 CTTTACTAA-TTCATGAATTTGTACATATA-T-TAAAGAAAAA-AGAAGACTTTTTGTTT 589 ||||| ||| |||||||||||||| ||||| | |||||||||| | |||| ||||||||| Sbjct 418 CTTTA-TAAATTCATGAATTTGTATATATAATATAAAGAAAAAGAAAAGAATTTTTGTTT 476 Query 590 CTGTTCTTC 598 ||||| ||| Sbjct 477 CTGTTGTTC 485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21939463675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5