BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32928.1
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473474 jgi|Araly1|473474|fgenesh2_kg.1__3428__AT1G32928.1 569 6e-162
> Ahg473474 jgi|Araly1|473474|fgenesh2_kg.1__3428__AT1G32928.1
Length=485
Score = 569 bits (308), Expect = 6e-162
Identities = 434/489 (89%), Gaps = 32/489 (7%)
Strand=Plus/Plus
Query 127 ATAATGAATTCGATGTTTAGTGCCTTCGACGCCATGTGTGCAGAGATTATGGGAAAGAAA 186
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 12 ATAATGAATTCGATGTTTAGTGCCTTTGACGCCATGTGTGCAGAGATTATGGGTAAGAAA 71
Query 187 GTCACCGCTGCTTCTTATGTCTACCGCTCTGAACGCAATTCTGCTTCTTCTTCTTCTTCC 246
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 72 GTCACCGCTGCTTCTTATGTCTACCGCTCTGAACGCAATTCTG------CTTCTTCTTCC 125
Query 247 GTCGGCGGTCAAAACGCGTCTTTGTCTCTCAAGAAAGATGAAAAAGCTTCAAAGAACATG 306
| |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 126 GGCGGCGGTCAAAACGCGTCTTTGTCGCTCAAGAAAGATGAACAAGCTTCCAAGAACATG 185
Query 307 GATTTACCAACGAAGACACCGAGGTTTGCTCTTGAGCTCGATGGTCTTCATTGCTTCGAG 366
|||||||| || |||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 186 GATTTACCGACCAAGACACCGAGGTTTGCTCTTGAGCTTGATGGACTTAATTGCTTCGAG 245
Query 367 ACTATAGTTCGTTCTTGATCAATATCAAGATTACCAATTTTTGCTGAGtttttttttctt 426
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 246 ACTATAGTTCGTTCTTGATCAATATCAAGATTACGAATTTTTGCTGAGTTTTTTCTT-TT 304
Query 427 tttcttgtt-ttgttctgtttcgattccttttATGTAAATACAATTTTGGAAGATTTAAT 485
|| || || |||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 305 GTT-TT-TTCTTGTTCTG-----ATTCCTTTTATGTAAATACAATTTTGGAAAATTCAAT 357
Query 486 TT-CTTGATTAGAATCATCATCCTTATGTGATT-TG-A-TT-C-A-T--C--GT-TTCTG 533
|| |||||||| |||||||||| |||||||||| | | || | | | | || |||||
Sbjct 358 TTTCTTGATTACAATCATCATCATTATGTGATTGTTTAATTTCGAATTACTCGTGTTCTG 417
Query 534 CTTTACTAA-TTCATGAATTTGTACATATA-T-TAAAGAAAAA-AGAAGACTTTTTGTTT 589
||||| ||| |||||||||||||| ||||| | |||||||||| | |||| |||||||||
Sbjct 418 CTTTA-TAAATTCATGAATTTGTATATATAATATAAAGAAAAAGAAAAGAATTTTTGTTT 476
Query 590 CTGTTCTTC 598
||||| |||
Sbjct 477 CTGTTGTTC 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21939463675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5