BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32930.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473475 jgi|Araly1|473475|fgenesh2_kg.1__3429__AT1G32930.1 2108 0.0
Ahg942467 jgi|Araly1|942467|scaffold_603011.1 294 1e-78
> Ahg473475 jgi|Araly1|473475|fgenesh2_kg.1__3429__AT1G32930.1
Length=1551
Score = 2108 bits (1141), Expect = 0.0
Identities = 1332/1420 (94%), Gaps = 30/1420 (2%)
Strand=Plus/Plus
Query 239 GACGATGATGTCGTTTTGATGAGTTCAGCTGTTGTTTTCGCTAAGACAACCTTAAAAATA 298
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 139 GACGATGATGTCGTTTTGATGAGTTCACCTGTTGTTTTCGCTAAGACAACCTTAAAAATA 198
Query 299 AAGAAACTAGCTTTCCTCTTCTCTCATTAAAGAGttttttttCGAAAAGAGTTAAAGAAA 358
|||||||||||||| | | ||| || | || | | | ||||||
Sbjct 199 AAGAAACTAGCTTT-C-C-TCT-TC--------------TCTC----A-A--T-AAGAAA 232
Query 359 AAATGGGAATGGGAAGGTATCAGAAATCTGCAACTTCTGGTGTTTCAGCTAGATGGGTTT 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 233 AAATGGGAATGGGAAGGTATCAGAAATCTGCAACTTCTGGTGTTTCAGCGAGATGGGTTT 292
Query 419 TTGTTCTCTGTATTTCTAGCTTCCTTCTTGGTGTTCTTGTCGTTAACAGGCTTTTGGCAA 478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 293 TTGTTCTCTGTATTTCTAGCTTCCTTCTTGGTGTTCTTGTTGTTAACAGGCTTTTGGCAA 352
Query 479 GTTTTGAAACCGTAGATGGCATTGAGAGAGCTTCACCTGAGCAAAATGATCAATCTAGAT 538
||||||||||||||||||||||||||| || |||| |||||| ||||||||| |||| |
Sbjct 353 GTTTTGAAACCGTAGATGGCATTGAGAAAGGTTCATCTGAGCCGAATGATCAAGCTAGGT 412
Query 539 CACTTAATCCTCTTGTTGATTGTGAGAGCAAGGAAGGAGACATTCTATCTCGAGTTTCGC 598
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 413 CACTTCATCCTCTTATTGATTGTGAGAGTAAGGAAGGAGACATTCTATCTCGAGTTTCGC 472
Query 599 ATACTCATGATGTTATCAAGACATTAGACAAGACAATTTCTTCTCTTGAGGTAGAACTAG 658
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 473 ATACTCATGATGTTATCAAGACATTGGACAAGACAATTTCTTCTCTTGAAGTAGAACTAG 532
Query 659 CTACAGCTCGAGCAGCAAGATCTGATGGTAGAGATGGATCTCCAGCTGTTGCAAAAACAG 718
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 533 CTTCAGCTCGAGCAGCAAGATCTGACGGTAGAGATGGATCTCCAGCTGTTGCAAAATCAG 592
Query 719 TAGCAGACCAATCGAAGATTCGGCCTCGGATGTTCTTTGTGATGGGAATCATGACTGCTT 778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TAGCAGACCAATTGAAGATTCGGCCTCGGATGTTCTTTGTGATGGGAATCATGACTGCTT 652
Query 779 TCAGTAGCAGAAAACGAAGAGACTCCATAAGAGGAACTTGGCTTCCTAAAGGGGATGAAT 838
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 653 TCAGTAGCAGAAAACGAAGAGACTCAATAAGAGGAACCTGGCTTCCTAAAGGGGATGAAT 712
Query 839 TGAAAAGATTAGAGACAGAGAAGGGAATCATTATGAGATTTGTTATAGGTCACAGTTCTT 898
||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 713 TGAAAAGGCTAGCGACAGAGAAAGGAATCATTATGAGATTTGTCATAGGTCACAGTTCTT 772
Query 899 CTCCTGGAGGAGTCTTGGACCACACCATTGAAGCTGAAGAAGAACAACACAAAGACTTCT 958
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 773 CTCCTGGAGGAGTCTTGGACCACACCATTGAAGCTGAAGAAGAACAACATAAGGACTTCT 832
Query 959 TTCGACTGAATCACATAGAAGGTTATCATGAATTATCATCTAAAACCCAAATATACTTCT 1018
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 833 TTCGCCTGAACCACATAGAAGGTTATCATGAATTATCATCTAAAACTCAAATATACTTCT 892
Query 1019 CATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGATGTTCACG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGATGTTCACG 952
Query 1079 TAAATCTCGGAATGCTTGGTTCTACATTGGCTCGCCACAGATCAAAACCGCGAGTGTACA 1138
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 TAAATCTCGGGATGCTTGGTTCTACATTGGCACGCCACAGATCAAAACCGCGAGTGTACA 1012
Query 1139 TTGGTTGCATGAAGTCTGGACCTGTCCTTGCTCAAAAAGGAGTCAAATACCATGAGCCAG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TTGGTTGCATGAAGTCTGGACCTGTCCTTGCTCAAAAAGGAGTCAAATACCATGAGCCAG 1072
Query 1199 AATATTGGAAGTTTGGTGAAGAAGGAAACAAATACTTCAGACATGCAACTGGACAAATCT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AATATTGGAAGTTTGGTGAAGAAGGAAACAAATACTTCAGACATGCAACTGGACAAATCT 1132
Query 1259 ATGCAATCTCCAAAGATTTAGCAACTTATATCTCAGTTAACCGGCAACTACTTCACAAGT 1318
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1133 ATGCCATCTCCAAAGATTTAGCAACTTATATCTCAGTAAACCGGCAACTACTTCACAAGT 1192
Query 1319 ATGCAAATGAAGATGTCTCTTTAGGTTCTTGGTTCATTGGTCTCGATGTTGAACATATCG 1378
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1193 ATGCAAATGAAGACGTCTCTTTAGGTTCTTGGTTCATCGGTCTCGATGTTGAACATATCG 1252
Query 1379 ACGATAGAAGCCTCTGCTGTGGAACACCTTTAGATTGTGAGTGGAAGGGTCAAGCAGGAA 1438
| ||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1253 ATGATCGAAGCCTCTGCTGCGGAACACCCTTGGATTGTGAGTGGAAGGGTCAAGCAGGAA 1312
Query 1439 ACCCTTGCGCAGCATCGTTCGATTGGAGCTGTAGTGGAATCTGCAAATCCGTAGATAGAA 1498
||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1313 ACCATTGCGCAGCATCGTTCGATTGGAGCTGTAGCGGAATCTGCAAATCTGTGGATAGAA 1372
Query 1499 TGCTTGAAGTACATCAACGTTGTGGTGAAGGCGATGGAGCAATTTGGCATAGTAGTTTCT 1558
|||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 1373 TGCTGGAAGTACATCAACGTTGTGGAGAAGGCGATGGAGCAATTTGGCACACAAGTTTCT 1432
Query 1559 AAATATTTTCTCTCTGTAATGTATAGTTTTCAGCTTCTTCTTCTTCTTATGGATTATTAG 1618
||| ||| |||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 1433 AAA-ATT--CTCTCTGTAATGTATAGTTT-CAGCTTCTTCTTCTTCTTATAGATCATTAG 1488
Query 1619 TCTAGGTTATGATTATGATTGATGTTACATGTTTAACATT 1658
| |||||| ||||||||| ||||||| |||||||||||||
Sbjct 1489 TATAGGTTCTGATTATGACTGATGTTCCATGTTTAACATT 1528
> Ahg942467 jgi|Araly1|942467|scaffold_603011.1
Length=345
Score = 294 bits (159), Expect = 1e-78
Identities = 186/199 (93%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 892 AGTTCTTCTCCTGGAGGAGTCTTGGACCACACCATTGAAGCTGAAGAAGAACAACACAAA 951
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 47 AGTTCTTCTCATGGAGGAGTCTTGGACCACACCATTGAAGCTAAAGAACAACAACACAAT 106
Query 952 GACTTCTTTC-GACTGAATCACATAGAAGGTTATCATGAATTATCATCTAAAACCCAAAT 1010
|||||| ||| | |||||| | | |||||||||||||||||||||||| ||||| |||||
Sbjct 107 GACTTC-TTCTGTCTGAATAAGAGAGAAGGTTATCATGAATTATCATCGAAAACTCAAAT 165
Query 1011 ATACTTCTCATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGA 1070
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 ATATTTCTCATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGA 225
Query 1071 TGTTCACGTAAATCTCGGA 1089
|||||||||||||||||||
Sbjct 226 TGTTCACGTAAATCTCGGA 244
Score = 159 bits (86), Expect = 5e-38
Identities = 99/105 (94%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 1177 GGAGTCAAATACCATGAGCCAGAATATTGGAAGTTTGGTGAAGAAGGAAACAA-ATACTT 1235
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 242 GGAGTCAAATACCATGAGCCAGAGTATTGGAAGTTTGGTGAAGAAGGAAACAAGA-ACTT 300
Query 1236 CAGACATGCAACTGGACAAATCTATGCAATCTCCAAAGATTTAGC 1280
|||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 301 CAGACACGCAACTGGACAAATCTAAGCCATCTCCAAAGATTTAGC 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5