BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32970.1
Length=2205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473479 jgi|Araly1|473479|fgenesh2_kg.1__3433__AT1G32970.1 2239 0.0
Ahg336380 jgi|Araly1|336380|fgenesh1_pg.C_scaffold_1002945 294 2e-78
> Ahg473479 jgi|Araly1|473479|fgenesh2_kg.1__3433__AT1G32970.1
Length=2154
Score = 2239 bits (1212), Expect = 0.0
Identities = 1543/1704 (91%), Gaps = 17/1704 (1%)
Strand=Plus/Plus
Query 512 TCTCTCCTAGAGACTTCGACGGTCACGGGACACACGTGGCTGCAACAGCTGCTGGCTCAT 571
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 458 TCTCTCCTAGAGACTTCAACGGTCACGGGACACACGTGGCTGCAACCGCTGCTGGCTCGT 517
Query 572 TTGTCCCGGACACGAA-CTACTTAGGACTTGGGAGAGGAACCGCTAGAGGCGGGGCCCC- 629
||||| ||||| | || |||||||| || |||||||||||||||||||| || |||||
Sbjct 518 TTGTCGCGGACGC-AAGCTACTTAGCTCTGGGGAGAGGAACCGCTAGAGGTGGAGCCCCT 576
Query 630 ACGGGCACGCATAGCTATGTACAAGGCTTGTTGGCACTTAG--T-TACAGGAGCAACTAC 686
| |||| ||||| |||||||||||||||||||||||||||| | || |||| || ||||
Sbjct 577 A-GGGCCCGCATTGCTATGTACAAGGCTTGTTGGCACTTAGCATCTATAGGAACAGCTAC 635
Query 687 TTGTTCAGCTGCGGATTTGGTAAAAGCAATAGATGAAGCTATTCACGATGGTGTCGACGT 746
|||||||||||| ||| || | ||||||||||| ||||| |||||||||||||| |||||
Sbjct 636 TTGTTCAGCTGCAGATATGTTGAAAGCAATAGACGAAGCCATTCACGATGGTGTAGACGT 695
Query 747 TTTGTCGATCTCCAACGGC-TTCTCGGTTCCTCTGTTTCCGGAAGTGGACACTCAAGACG 805
|||||| |||| | || | ||| | ||||||||||||||||||||||| ||| ||||
Sbjct 696 TTTGTCAATCT-CGACATCGTTCCCAATTCCTCTGTTTCCGGAAGTGGACGCTCGGGACG 754
Query 806 GTGTGGCGGTTGGAGCGTTTCATGCAGTTGCCAAGGGAATTCCCGTCGTTTGTGCCGGTG 865
| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 755 CTATGGCGGTTGGAGCGTTTCATGCGGTTGCCAAGGGAATTCCCGTCGTCTGTTCCGGTG 814
Query 866 GCAACGCTGGTCCCT-CTTCTCAGACTATTAGCAACACGGCTCCTTGGATCATTACCGTT 924
| ||||| ||| ||| ||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 815 GTAACGCGGGT-CCTGCTTCTCAAACCGTTACCAACACGGCTCCTTGGATCATTACCGTT 873
Query 925 GCTGCAACCACTCAAGATCGGTCTTTTCCCACATTTATTACACTTGGCAACAATGTCAC- 983
||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| | ||
Sbjct 874 GCTGCAACCACTCAAGATCGGTCTTTTCCAACACTTATTACACTAGGCAACAATATTACT 933
Query 984 AGTTGTGGGTCAAGCATTGTATCAAGGTCCAGATATTGATTTCACCGAGCTGGTTTACCC 1043
| ||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 934 A-TTGTGGGTCAAGCATTGTATCAAGGTCCAGACATGGATTTCACCGGGCTGGTTTACCC 992
Query 1044 TGAAGATTCAGGAGCAAGCAACGAGACATTTTATGGAGTCTGTGAAGATCTTGCCAAGAA 1103
|||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 993 CGAAGGTCCAGGAGCAAGCAACGAGACATTTTCCGGAGTTTGTGAAGATCTTGCCAAGAA 1052
Query 1104 CCCAGCTCATATAATAGAAGAAAAGATTGTCTTATGTTTCACAAAATCGAC-GAGTTATA 1162
||||||| ||||||| ||||||||||||| || ||||||||||||||||| || ||||
Sbjct 1053 TCCAGCTCGTATAATAAAAGAAAAGATTGTTTTGTGTTTCACAAAATCGACGGA-TTATG 1111
Query 1163 GTACCATGATTCAGGCTGCATCAGATGTAGTTAAACTTGATGGCTACGGCGTGATCGTTG 1222
||||| |||| |||||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 1112 GTACCGTGATCCAGGCTGCATCAGATGTATTTAACCTTGATGGCTACGGCGTGATCGTAG 1171
Query 1223 CAAGAAATCCGGGCCATCAGCTTAGTCCATGCTTCGGTTTCCCCTGCCTTGCTGTCGATT 1282
|||||||||| ||| ||||||||| ||||||| |||||| ||||| || ||||| ||||
Sbjct 1172 CAAGAAATCCAGGCTATCAGCTTAATCCATGCGACGGTTTTCCCTGTCTCGCTGTAGATT 1231
Query 1283 ACGAACTTGGAACTGATATACTCTTCTACATACGTTCCACTAGATCACCTGTCGCCAAGA 1342
||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1232 ACGAACTAGGAACCGATATACTCTTCTACATACGTTCCTCTAGATCACCAGTCGCCAAGA 1291
Query 1343 TTCAACCTACAAGAACGTTGGTTGGACTTCCCGTGGCTACAAAGGTCGCGACTTTCTCAT 1402
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1292 TTCAACCTACAAGAACGTTGGTTGGAATTCCCGTGGCTACAAAGGTCGCGACTTTCTCAT 1351
Query 1403 CGAGAGGACCTAATTCCATCTCTCCTGCAATTCTCAAGCCTGATATTGCAGCACCTGGAG 1462
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 CGAGAGGACCTAGTTCGATCTCTCCTGCAATTCTCAAGCCTGATATTGCAGCACCTGGAG 1411
Query 1463 TAAACATACTCGCAGCGACTTCTCCAAATGATACATTCTATGACAAAGGATTTGCTATGA 1522
| |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1412 TGAACATACTCGCAGCTACTTCTCCAAACGATACATTCTATGACAGAGGATTTGCTATGA 1471
Query 1523 AATCAGGAACGTCGATGTCAG-CTCCTGTTGTTGCAGGAATTGTAGCACTCCTCAAGTCT 1581
|||||||||| || ||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1472 AATCAGGAACATCAATGTC-GACTCCTGTTGTTGCAGGAATTGTAGCACTCCTTAAGTCT 1530
Query 1582 GTGCACCCTCATTGGTCGCCTGCTGCCATTAGATCCGCCATTGTTACTACAGCATGGAGA 1641
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1531 TTGCACCCTCATTGGTCTCCTGCCGCCATTAGATCCGCCATTGTTACTACAGCTTGGAGA 1590
Query 1642 ACAGATCCGTCCGGTGAACCCATTTTTGCAGACGGATCAAACCGTAAATTAGCTGATCCA 1701
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1591 ACGGATCCATCCGGTGAACCCATTTTCGCAGACGGATCAAACCGTAAATTAGCTGATCCA 1650
Query 1702 TTTGACTACGGAGGAGGCGTTGTGAATTCAGAGAAAGCAGCAAACCCCGGTCTTGTTTAC 1761
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1651 TTTGACTACGGAGGAGGCGTTGTGAACTCAGAGAAAGCCGCAAAACCCGGTCTTGTTTAC 1710
Query 1762 GATATGGGAGTTAAAGATTACATCCTCTACTTGTGTTCAGTTGGTTACACAGATTCATCT 1821
|||||||||||||| ||||| | ||||||||||| || ||||||||||||||||||||
Sbjct 1711 GATATGGGAGTTAAGGATTATGTTCTCTACTTGTGCTCCGTTGGTTACACAGATTCATCC 1770
Query 1822 ATTACTGGACTCGTCAGCAAGAAGACAGTATGTGCAAACCCTAAACCTTCAGTTCTTGAT 1881
|||||| |||||||| | |||||||| || |||||||||||||| ||||| |||||||||
Sbjct 1771 ATTACTAGACTCGTCCGGAAGAAGACGGTTTGTGCAAACCCTAAGCCTTCTGTTCTTGAT 1830
Query 1882 CTCAATTTGCCTTCAATCACAATCCCAAACCTTGCAAAAGAAGTTACTATCACTAGAACG 1941
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 CTTAACTTGCCTTCAATCACAATCCCAAACCTTGCAAAAGAAGTTACTATCACTAGAACC 1890
Query 1942 GTTACCAACGTTGGACCAGTAGGGTCAGTTTATAAGCCTGTGATTGAGGCTCCAATGGGT 2001
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 1891 GTTACCAACGTTGGACCAGTAGGGTCAGTTTACAAGGCTGTGATTGAGGCTCCGATGGGT 1950
Query 2002 GTTAACGTGACCGTGACACCAAGCACATTAGTGTTCAATGCTTATACCAGGAAGCTCTCG 2061
|||||||||||||||||||| || |||||||||||||| ||| | | |||||||||||||
Sbjct 1951 GTTAACGTGACCGTGACACCGAGGACATTAGTGTTCAACGCTAAGAACAGGAAGCTCTCG 2010
Query 2062 TTTAAGGTTCGTGTCTTAACGAACCATATAGTGAACACTGGATACTACTTTGGTAGCTTG 2121
|| ||||| ||||| |||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 2011 TTCAAGGTCCGTGTGATAACGAACCATAGAGTGAACACTGGCTACTACTTTGGAAGCTTG 2070
Query 2122 ACTTGGACCGACTCTGTTCATAATGTGGTTATTCCTGTGTCTGTGAGAACTCAGATCATG 2181
|||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||| |
Sbjct 2071 ACTTGGACTGACTCTGTTCATAATGTGGCCATTCCTGTGTCTGTCAGAACTCAAATCTTA 2130
Query 2182 CAGCGTTATTATGATGAAAACTGA 2205
||||||||||| ||||| || |||
Sbjct 2131 CAGCGTTATTACGATGAGAATTGA 2154
Score = 435 bits (235), Expect = 9e-121
Identities = 338/385 (88%), Gaps = 18/385 (5%)
Strand=Plus/Plus
Query 1 ATGACGAGAGCACTGATTCTTGTGGCTATATGTCTAATGCTTACTCTAAACAATGCTGCT 60
||||||| | ||| ||||||| |||||||||||||||||||| |||| |||| |||||||
Sbjct 1 ATGACGAAAACACCGATTCTTATGGCTATATGTCTAATGCTTGCTCTCAACATTGCTGCT 60
Query 61 GAGACTAAGGTTCACATAGTGTATCTAGGTGAGAA-ACAACACGATGATCCTGACTCAGT 119
|| ||||||||||| ||||||||||| ||||| || |||||||||||||||||||| ||
Sbjct 61 GAAACTAAGGTTCATATAGTGTATCTCGGTGA-AAGGCAACACGATGATCCTGACTCCGT 119
Query 120 CACCGAGTCTCATCATCAGATGCTTTGGTCAATCCTCGGAAGTAAAGAAGCTGCACATGA 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 CACCGAGTCTCATCATCAGATGCTTTGGTCAATCCTTGGAAGTAAAGAAGCTGCACATGA 179
Query 180 CTCAATG----AC-G----C--CATGGCTTCTCAGCTTTCGCAGCCAAACTAACCA-ATT 227
|||||| | | | ||||||||||||||||||||||||||||| || | |||
Sbjct 180 TTCAATGGTGTATAGTTATCGTCATGGCTTCTCAGCTTTCGCAGCCAAACTTAC-AGATT 238
Query 228 TCCAAGTGAATCAACTCTCAGA-TTCTACGAGTTACAGACAACTAGGACTTGGGATTACT 286
|||||||| |||||||||||| |||||||| || || ||||||||||| ||||||||||
Sbjct 239 CCCAAGTGATTCAACTCTCAGAATTCTACGAATTGCAAACAACTAGGACATGGGATTACT 298
Query 287 T-ACAACACACTTCAAAACATCCAAAGAATATTCTAAACCAAACTAACATGGGAGACCAA 345
| | |||| ||||||| ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 299 TGA-AACATACTTCAAGACATCCAAAGAATCTTCTAAACCAAACTAACATGGGAGACAAA 357
Query 346 CTCATCATCGGCGTTGTTGACTCCG 370
||||||| ||||| ||||||||||
Sbjct 358 GTCATCATTGGCGTCGTTGACTCCG 382
Score = 124 bits (67), Expect = 2e-27
Identities = 67/67 (100%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 411 ATATGGCCAGAGTCTGAATCATTCAGTGACAATGGTCTTGGACCAATACCAAAACGTTGG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 ATATGGCCAGAGTCTGAATCATTCAGTGACAATGGTCTTGGACCAATACCAAAACGTTGG 444
Query 471 AAAGGAA 477
|||||||
Sbjct 445 AAAGGAA 451
> Ahg336380 jgi|Araly1|336380|fgenesh1_pg.C_scaffold_1002945
Length=684
Score = 294 bits (159), Expect = 2e-78
Identities = 213/239 (89%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 1970 TTTATAAGCCTGTGATTGAGGCTCCAATGGGTGTTAACGTGACCGTGACACCAAGCACAT 2029
|||||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 446 TTTATAAGGCTATGATTGAGGCTCCGATGGGTGTTAACGTGACCGTGACACCGAGCACAT 505
Query 2030 TAGTGTTC-A-ATGCTTATACCAGGAAGCTCTCGTTT-AAGGTTCGTGTCTTAACGAACC 2086
|||||||| | | ||| | ||||| |||||||||||| ||||| ||||| ||||||||||
Sbjct 506 TAGTGTTCAACACGCTAAGACCAGAAAGCTCTCGTTTCAAGGTCCGTGTGTTAACGAACC 565
Query 2087 ATATAGTGAACACTGGATACTACTTTGGTAGCTTGACTTGGACCGACTCTGTTCATAATG 2146
| | |||||||||| | ||||||||||| |||||||||||||| || |||||||||||||
Sbjct 566 AAAGAGTGAACACTCGCTACTACTTTGGAAGCTTGACTTGGACTGAGTCTGTTCATAATG 625
Query 2147 TGGTTATTCCTGTGTCTGTGAGAACTCAGATCATGCAGCGTTATTATGATGAAAACTGA 2205
||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 626 CGGTCATTCCCGTGTCAGTGAGAACTCAGATCATGCAGCGTTATTACAATGAAAACTGA 684
Score = 108 bits (58), Expect = 2e-22
Identities = 94/110 (85%), Gaps = 7/110 (6%)
Strand=Plus/Plus
Query 1743 AAACCCCGGTCTTGTTTACGATATGGGAGTTAAAGATTACATCCTCTA---CTTGTGTTC 1799
||| ||||||||||||||||||||||||||||| |||||| | ||||| |||||| |
Sbjct 330 AAA-CCCGGTCTTGTTTACGATATGGGAGTTAACGATTACGTTCTCTAGTACTTGTGCT- 387
Query 1800 A-GTT-GGTTACACAGATTCATCTATTACTGGACTCGTCAGCAAGAAGAC 1847
| ||| ||||||| ||||| ||| |||||| |||||||| ||||||||||
Sbjct 388 ATGTTTGGTTACAAAGATTTATCCATTACTAGACTCGTCCGCAAGAAGAC 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82998643855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5