BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32990.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473481 jgi|Araly1|473481|fgenesh2_kg.1__3435__AT1G32990.1 1330 0.0
Ahg331540 jgi|Araly1|331540|fgenesh1_pm.C_scaffold_8000883 470 9e-132
> Ahg473481 jgi|Araly1|473481|fgenesh2_kg.1__3435__AT1G32990.1
Length=822
Score = 1330 bits (720), Expect = 0.0
Identities = 771/796 (97%), Gaps = 1/796 (0%)
Strand=Plus/Plus
Query 4 CTTTAGCTTTCACTAACCTTCTTCCTTCACAGTGAATCAATGGCGTCTTCTTCTCTATCA 63
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CTTCAGCTTTCACTTACCTTCTTCCTTCACATTGAATCAATGGCGTCTTCTTCTCTATCA 60
Query 64 ACTCTTTGCAGCTCAACTTCTTCTTCTCTACATCCCAACTCCAAACTCTCACATTCTCTT 123
|||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 61 ACTCTTTGTAGCTCAACTTCATCTTCTCTGCATCCCAACTCTAAGCTCTCACATTCTCTT 120
Query 124 TCAGCTAAATTATCCTCCAAAGCAAATGTTTCCGTCCAATTTCTGGGAAAGAAACAGTCT 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCAGCTAAATTATCCTCCAAAGCAAATGTTTCCGTTCAATTTCTGGGAAAGAAACAGTCT 180
Query 184 CCGCTTCTCTCCTCAACTCCGAGATTTCTCACTGTTATCGCCATGGCTCCACCTAAACCC 243
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACTTCTCTCCTCAACTCCGAGATTTCTCACTGTTATCGCCATGGCTCCACCTAAACCT 240
Query 244 GGAGGCAAAGCTAAAAAAGTTGTGGGAGTTATCAAACTTGCTTTAGAGGCGGGAAAAGCA 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GGAGGCAAAGCTAAAAAAGTTGTGGGAGTTATCAAACTGGCTTTAGAGGCGGGAAAAGCA 300
Query 304 ACTCCGGCACCACCGGTTGGTCCGGCGCTTGGTTCTAAGGGAGTTAACATTATGGCTTTT 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTCCGGCGCCACCGGTTGGTCCGGCGCTTGGTTCTAAGGGAGTTAACATTATGGCTTTT 360
Query 364 TGCAAGGATTATAATGCAAGAACTGCTGATAAAGCTGGTTATATCATTCCTGTTGAAATC 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCAAGGATTATAATGCAAGAACTGCTGATAAAGCTGGTTATATCATTCCTGTTGAAATC 420
Query 424 ACTGTCTTCGATGATAAGAGCTTCACGTTTATTCTCAAGACCCCGCCTGCTTCGGTTTTG 483
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 ACTGTCTTTGATGATAAGAGCTTCACGTTTATCCTCAAGACCCCGCCTGCTTCGGTTTTG 480
Query 484 TTGCTTAAAGCTGCAGGTGTTGAGAAGGGATCAAAAGATCCACAGCAAGATAAAGTTGGG 543
|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 481 TTGCTTAAGGCTGCAGGTGTTGATAAGGGATCAAAAGATCCACAGCAAGCTAAAGTTGGG 540
Query 544 GTGATAACAATAGACCAGCTACGCACAATTGCAGCAGAGAAGCTACCCGACCTGAACTGC 603
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GTGATAACAATAGACCAGCTGCGCACAATTGCAGCAGAGAAGCTGCCCGACCTGAACTGC 600
Query 604 ACGACCATTGAATCCGCTATGAGAATCATTGCAGGAACTGCAGCTAACATGGGGATAGAC 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGACCATTGAATCCGCTATGAGAATCATTGCAGGAACTGCAGCTAACATGGGGATAGAC 660
Query 664 ATTGACCCTCCGATTCTTGAACCCAAAAAGAAAGCAGTTTTATTGTAAAAGCCTGGTTGG 723
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 ATTGACCCTCCGATTCTTGAACCCAAAAAGAAAGCAGTTTTGTTGTAAAAGCCTGGTTGG 720
Query 724 TAGTTTCTATTCCATAATGCCTTATTCGTTTCAAAGTGTAATTTTCCAACATGACGCTTA 783
|||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 721 TAGTTTCTATTCGATAATGCCTTATTCGTTTCAAAGTGTAATTT-CCAAAATGACGCTTA 779
Query 784 AGAGAGTTCGATATAA 799
|||||||||||| |||
Sbjct 780 AGAGAGTTCGATGTAA 795
> Ahg331540 jgi|Araly1|331540|fgenesh1_pm.C_scaffold_8000883
Length=711
Score = 470 bits (254), Expect = 9e-132
Identities = 565/708 (80%), Gaps = 49/708 (7%)
Strand=Plus/Plus
Query 43 ATGGCGTCTTCTTCTCTATCAACTCTTTGCAGCT-CAACTTCTTCTTCTCTACATCCCAA 101
||||||||||||||||||||||| |||||||| | | ||||| |||||||| |||| ||
Sbjct 1 ATGGCGTCTTCTTCTCTATCAACCCTTTGCAGTTGC-ACTTCGTCTTCTCTGTATCCTAA 59
Query 102 CTCCAAACTCTCACATTCTCTTTCAGCTAAA-TTATCCTCCAAAGCAAATGTTTCCGTCC 160
| | || ||||||| || |||||| || ||| ||| |||||||| ||||||||||| | |
Sbjct 60 CACTAAGCTCTCACGTTATCTTTCGGC-AAACTTAACCTCCAAAACAAATGTTTCCATTC 118
Query 161 AATTTCTGGGAAAGAAACAG-TCTCCGCTTCTCTCCTCAACTC-CGAGATTTCTCACTGT 218
| ||||| |||||||||| | || ||||||||||||||||| | |||||||||||||||
Sbjct 119 AGTTTCTTGGAAAGAAACCGTTC-CCGCTTCTCTCCTCAAC-CATGAGATTTCTCACTGT 176
Query 219 TAT---CGCCATGGCTCCACCTAA-ACCCGGAGGCAAAGCTAAAAAAGTTGTGGGAGTTA 274
| | ||||| ||||| | | || ||| |||||||| | |||||||| || ||| ||
Sbjct 177 TGTCGCCGCCACGGCTCAATC-AATACCTAGAGGCAAAACCAAAAAAGTGGTTGGAACTA 235
Query 275 TCAAACTTG-CTTTA-GAGGCGGGAAAAGCAACTCCGGCACCACCGGTTGGTCCGGCGCT 332
| ||| || | || | |||||||| |||||||||||| || ||||| ||||||||| |
Sbjct 236 T-AAAAATGAATGTATG-GGCGGGAAGAGCAACTCCGGCGCCCCCGGTAGGTCCGGCGTT 293
Query 333 TGGTTCTAAGGGAG----T------TAACATTAT-G----GC-TTTTTGCAAGGATTATA 376
|| ||| | ||||| | |||| ||| | || |||||||||||| || |
Sbjct 294 TGCTTCGAGGGGAGACAATCAAGAAAAACA-TATGGCTAAGCGTTTTTGCAAGGAGTACA 352
Query 377 ATGCAAGAACTGCTGATAAAGCT-GGTTATATCATTCCTGTTGAAATCACTGTCTTCGAT 435
| || |||| || |||||| || ||| |||| |||||||| | | || |||| ||||
Sbjct 353 ACGCCCGAACCGCAGATAAA-CTCGGTGATATAATTCCTGTCCTAGTTACAGTCTACGAT 411
Query 436 GATAAGAGCTTCACGTTTATTCTCAAGACCCCGCCTGCTTCGGTTTTGTTGCTTAAAGCT 495
|||| ||||||||| ||||| ||||||||||| ||||||||| ||||||||||||| |||
Sbjct 412 GATATGAGCTTCACTTTTATCCTCAAGACCCCTCCTGCTTCGTTTTTGTTGCTTAAGGCT 471
Query 496 GC-AG-------GTG-TTGAGAAGGGATCAAAAGATCCACAGCAAGATAAAGTTGGGGTG 546
| || || || | || ||||| ||||||||| ||||| ||||||||||| ||
Sbjct 472 -CAAGACCCCTCCTGCTTCA-AA-GGATCTAAAGATCCAAAGCAAAATAAAGTTGGGATG 528
Query 547 ATAACAATAGACCAGCTACGCACAATTGCAGCAGAGAAGCTACCCGACCTGAACTGCACG 606
||||||||||| || || |||| |||||||| ||| ||||| || || ||||| |||||
Sbjct 529 ATAACAATAGAACAACTCCGCAAAATTGCAGAAGAAAAGCTGCCTGAGCTGAATTGCACT 588
Query 607 ACCATTGAATCCGCTATGAGAATCATTGCAGGAACTGCAGCTAACATGGGGATAGACATT 666
|| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 589 ACAATTGTATCCGCTATGAGAATCATTGCAGGAACTGCATCTAACATGGGGATAGACATT 648
Query 667 GACCCTCCGATTCTTGAACCCAAAAA-GAAAGCAGTTTTATTGTAAAA 713
|||||||| ||||||||||| ||||| |||| || ||| || |||||
Sbjct 649 GACCCTCCTATTCTTGAACCTAAAAAAGAAAATAGCTTTGTTTTAAAA 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5