BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33030.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313855 jgi|Araly1|313855|fgenesh1_pm.C_scaffold_1002635 1474 0.0
> Ahg313855 jgi|Araly1|313855|fgenesh1_pm.C_scaffold_1002635
Length=1059
Score = 1474 bits (798), Expect = 0.0
Identities = 976/1063 (92%), Gaps = 8/1063 (1%)
Strand=Plus/Plus
Query 65 ATGGAAGAACAAAACCTCTCCTCGTACGCAATGATCTTATCAAGCTCTTCTGTTCTTCCC 124
|||||||||||||| || || | ||||||||||||| |||| |||| |||||||||||||
Sbjct 1 ATGGAAGAACAAAATCTATCTTTGTACGCAATGATCCTATCTAGCTGTTCTGTTCTTCCC 60
Query 125 ATGGTTCTTAAGACAGCCATTGATCTTGGTCTCTTTGACATATTAGCTGAATCTGGTCCT 184
|||||||| |||||||| || |||||||||||||| ||||||||||| ||||||||||||
Sbjct 61 ATGGTTCTCAAGACAGCTATAGATCTTGGTCTCTTCGACATATTAGCCGAATCTGGTCCT 120
Query 185 TCCTCTGCTTCTCAGATCTTTTCTTTGTTGTCTAATGAGACAAAG-AAACATCATGATTC 243
|| ||||| |||||||| | ||| | ||||||| | |||| | | ||||||||||||||
Sbjct 121 TCATCTGCCACTCAGATCGTATCTCTCTTGTCTATTCAGAC-ACGAAAACATCATGATTC 179
Query 244 AAGCTTGGTCAATCGGATTCTGAGATTTCTTGCGAGTTACTCTATACTCACATGCTCTGT 303
||||||||||||||||||||| | |||||| |||||||||| ||| |||| ||||||||
Sbjct 180 AAGCTTGGTCAATCGGATTCTTCGGTTTCTTTCGAGTTACTCCATAGTCACCTGCTCTGT 239
Query 304 TTCTACTGAA-CACGGTGAGCCATTTGCAATCTATGGCTTAGCTCCTGTTGCCAAGTACT 362
||| ||| || |||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 240 TTCCACT-AACCACGATGAGCCATGTGCGGTCTATGGCTTAGCTCCTGTTGCCAAGTACT 298
Query 363 TCACCAAGAACCAAAATGGAGGTGGATCGTTGGCTCCGATGGTGAATC-TGTTTCAGGAC 421
|||||||||||||| ||||||||| |||||||||||| ||||||| | |||||||||||
Sbjct 299 TCACCAAGAACCAAGCTGGAGGTGGCTCGTTGGCTCCGTTGGTGAA-CTTGTTTCAGGAC 357
Query 422 AAGGTCGTGACTGATATGTGGTACAACCTTAAAGATTCTGTTCTTGAAGGAGGGCTTCCA 481
|| ||||| | |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 358 AAAGTCGTAATTGATATGTGGTACAACCTCAAAGATTCTGTTCTTGAAGGAGGAATTCCA 417
Query 482 TTCAACAACACTCACGGTTCAAGCGCGGTTGAACTGGTAGGCAGTGATTCAAGATTCAGA 541
|||||||| || |||||||| |||||||| ||| |||| || || || ||||||||||||
Sbjct 418 TTCAACAAGACACACGGTTCTAGCGCGGTCGAATTGGTTGGAAGAGACTCAAGATTCAGA 477
Query 542 GAAGTGTTCCAAAGCTCCATGAAAGGTTTCAATGAAGTATTCATAGAAGAATTTCTAAAG 601
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 478 GAAGTGTTCCAAAGCTCCATGAAAGGTTTCAATGAAGTTTTCATAGAAGAATTTCTGAAG 537
Query 602 AACTACAATGGTTTTGATGGTGTGAAGTCTTTGGTTGATGTTGGTGGTGGAGATGGCTCT 661
|| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 538 AATTACAATGGTTTTAATGGTGTGAAGTCGTTGGTTGATGTTGGTGGTGGAGATGGTTCT 597
Query 662 CTTCTCAGTAGAATCATCTCTAAGCATACTCACATTATCAAAGCTATTAACTTTGATTTG 721
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 CTTCTCAGTAGAATCCTCTCTAAGCATACTCACATCATCAAAGCTATTAACTTTGATTTG 657
Query 722 CCCACTGTTATCAACACTTCATTACCTTCTCCAGGAATTGAGCATGTTGCTGGAGATATG 781
|| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 658 CCAACTGTTATCAACACGTCACCACCTTCTCCAGGAATTGAGCATGTTGCTGGAGACATG 717
Query 782 TTTACAAACACTCCTAAAGGAGAAGCT-ATTTTCATGAAGTGGATGCTCCATAGCTGGGA 840
|||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 718 TTTATAAACATTCCTAAAGGAGAAG-TCATTTTCATGAAGTGGATGCTCCATAGCTGGGA 776
Query 841 CGATGACCATTGCGTGAAGATACTTTCCAACTGTTATCAGTCGTTACCGTCAAATGGGAA 900
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 CGATGAACATTGCGTGAAGATACTTTCCAACTGTTATCAATCGTTACCGTCAAATGGGAA 836
Query 901 GGTGATTGTAGTCGATATGGTAATCCCAGAGTTCCCAGGAGACACTCTCTTAGACAGAAG 960
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 837 GGTGATTGTAGTCGATATGGTAATCCCAGAGTTCCCGGGAGACACTCTCTTAGACAGAAG 896
Query 961 CTTGTTTCAGTTTGAGTTGTTCATGATGAACATGAACCCATCAGGGAAAGAACGAACAAA 1020
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 897 CTTGTTTCAGTTTGAGTTGTTCATGATGAATATGAACCCATCAGGGAAAGAAAGAACAAA 956
Query 1021 GAAAGAATTCGAGATCTTAGCTCGTCTCGCCGGATTCTCTAATGTCCAAGTTCCATTCAC 1080
||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 957 GAAAGAATTCGAGATCTTATCTCGCCTCGCCGGATTTTCTAATGTCCAAGTTCCATTCAC 1016
Query 1081 ATCTCTCTGTTTCTCAGTTCTTGAGTTCCACAAGAACAAGTGA 1123
||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 1017 ATCTCTCTGTTTCTCAGTTGTAGAGTTCCACAAGAACGAGTGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5