BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33040.1
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473483 jgi|Araly1|473483|fgenesh2_kg.1__3437__AT1G33040.1 1118 0.0
> Ahg473483 jgi|Araly1|473483|fgenesh2_kg.1__3437__AT1G33040.1
Length=825
Score = 1118 bits (605), Expect = 0.0
Identities = 746/812 (92%), Gaps = 18/812 (2%)
Strand=Plus/Plus
Query 1 ATCTACTTTATTTGTTTCATCTGTCACTCACTGTTAAGGAAGGTC-------T-T-GCTG 51
|||| |||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1 ATCTCCTTTATTTGTTTCATCTGTCACTCACTGTTAAGGAAGGTCTTTTGGTTCTCGCTG 60
Query 52 CGCTaag-a-aagaaaagaagaagaaagaTGCCAGGAGCAATTGTGGAGGAAGAGAAATC 109
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CGCTAAGAAGAAGAAAAGAAGAAGAAAGATGCCAGGAGCAATTGTGGAGGAAGAGAGATC 120
Query 110 TCAGATTGAATCCATCAAAGAGCAATTGAAACTCGAGAAGGAAGATGATGTTGTTGTGGA 169
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGATTGAATCCATTAAAGAGCAATTGAAACTCGAGAAGGAAGATGATGTTGTTGTGGA 180
Query 170 GGATGTGAAAGACGGAGAGGAAGAAGACGATGATGAAGACGATGAGGACGTCGAAGTTGA 229
|||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 181 GGATGTGAAAGACGGAGAGGAAGAAGACGACGACGAAGACGATGAGGACGTCGAAGGTGA 240
Query 230 AGGGGAAGGTGGAAATGAGAATGCAAAGCAAAGTAGAAGCGAGAAGAAAAGTCGCAAAGC 289
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 241 AGGAGAAGGTGGAAATGAGAATTCAAAGCAAAGTAGAAGCGAGAAGAAAAGTCGAAAAGC 300
Query 290 TGTTCTAAAGCTTGGCATGAAACCTGTCTCAGATGTCAGCAGAGTGACAATCAAAAGAGC 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TGTTCTAAAGCTTGGCATGAAACCTGTCTCAGATGTCAGCAGAGTGACAATCAAAAGAAC 360
Query 350 CAAGAATGTGTTATTTGTCATCTCGAAGCCAGATGTTTACAAGAGTCCCAATGCAGAGAC 409
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 361 CAAGAATGTGTTATTTGTTATCTCGAAGCCAGATGTTTACAAGAGTCCCAATGCCGACAC 420
Query 410 TTACGTCATTTTTGGAGAGGCCAAGGTCGACGATTTGAGCTCTCAGCTACAGACTCAAGC 469
||||||||||||||||||||| ||| |||||||| |||||||||||||||| || || ||
Sbjct 421 TTACGTCATTTTTGGAGAGGCTAAGATCGACGATCTGAGCTCTCAGCTACAAACCCAGGC 480
Query 470 TGCTCAGAGGTTTAAGATGCCTGATGTGACATCCATGCTACCTAACGCCGGTTCTGAAGC 529
|||||||||||| ||||||||||| || |||| ||||| ||||| | | |||||||||
Sbjct 481 TGCTCAGAGGTTCAAGATGCCTGACATGGCATCTATGCTCCCTAATGATGCTTCTGAAGC 540
Query 530 TACCATGGCTCCACTAGCAGAGGAAGAAGACGAAGACGATGTTGATGACACTGGTGTTGA 589
| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 541 TGCCATGGCTCCACTAGCAGAGGAAGAAGACGAAGAAGATGTTGATGACACTGGCGTTGA 600
Query 590 AGCCAGAGACATTGATCTTGTCATGACCCAAGCAGGTGTCTCCAAGGCCAAAGCCGTCA- 648
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 AGCTAGAGACATTGATCTTGTCATGACCCAAGCAGGTGTCTCTAAGGCCAAAGCCGTCAA 660
Query 649 GTGCTCTAAAGGCTAATGATGGGGATATCGTTTCAGCCATTATGGAACTCACTACATAGA 708
| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 G-GCTCTAAAGGCTAGTGATGGCGATATCGTTTCAGCCATTATGGAACTCACTACATAGA 719
Query 709 GTTGAGTAGTAG-AGCCACC-TAAATTGTGCTTTTGTTTCATTGTTTCTTGTCTCAGCTA 766
|||||||||||| | | | | || ||||||||||||||| |||||| |||||||||
Sbjct 720 GTTGAGTAGTAGTA-CAATTGTCGTTT-TGCTTTTGTTTCATTATTTCTTCTCTCAGCTA 777
Query 767 CCATTTTCTTTGAACATT-ATTAATTATGTCT 797
| |||||||| ||||||| ||| ||| |||||
Sbjct 778 CTATTTTCTTGGAACATTTATTGATTGTGTCT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31603898193
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5