BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33050.1
Length=2677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913127 jgi|Araly1|913127|Al_scaffold_0001_3381 2542 0.0
> Ahg913127 jgi|Araly1|913127|Al_scaffold_0001_3381
Length=1821
Score = 2542 bits (1376), Expect = 0.0
Identities = 1659/1794 (92%), Gaps = 25/1794 (1%)
Strand=Plus/Plus
Query 280 ATGAAGCACTACAGTCACGGAATTGATGGTTTACGAAGCGGTCTTTCACCTTCCGCTAAA 339
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAAGCACTACAGTCACGGAATTGATGGTTTACGAAGCGGTCTTTCACCATCCGCTAAA 60
Query 340 CCTTTCGCAATCGGTTCTTCTTCTTCTCCTGCCTTCTCTCTCAAATCTGAACACGAAGAT 399
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CCTTTCGCAATCGGTTCTTCTTCTTCTCCTTCCTTCTCTCTCAAATCTGAACACGAAGAT 120
Query 400 TCTATTTGGGGTGATTATACTTTAGACCTTTCCTTTTTATCCTCTGATGATCAGAGAAGT 459
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TCTATCTGGGGTGATTATACTTTAGACCTTTCCTTTTTATCCTCTGATGATCAAAGAAGT 180
Query 460 GGTCTCGATGATGATGATTCGTTATCTAACTTGTCTCGCGATGTTGAGACTAATAAAGAA 519
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 181 GGTCTTGATGATGATGATTCGTTATCTAACTTGTCTCGCGATGTGGAGACTAACAAAGAA 240
Query 520 GGATTGGTTTTAGAGGAGAAGATAGCTAGTTCTGGAAAGGTTTTGGTAAACCCTAATCCA 579
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATTGGTTTTGGAGGAGAAGATAGCTAGTTCTGGAAAGGTTTTGGTAAACCCTAATCC- 299
Query 580 AG-TTTCTCGAAATTGCCTGAGGTATTGATGAAGTCCTCAGATGTTGTTGGTGATGCGAA 638
|| |||||||||||||||||||||| |||| ||| ||||| |||||| ||||||||| ||
Sbjct 300 AGTTTTCTCGAAATTGCCTGAGGTACTGATAAAGCCCTCAAATGTTGCTGGTGATGCAAA 359
Query 639 GTTGGGTTTGTCCTGTGTCTCTGAGAAGTCTTCTACGGAGTCTGACCTAGATGAGTCTGA 698
||||||| ||||||||||||||||||| || ||||| |||||||| |||||| |||||
Sbjct 360 GTTGGGTCTGTCCTGTGTCTCTGAGAAATCGTCTACAGAGTCTGATGAAGATGACTCTGA 419
Query 699 GGAAGATTCTCCTTGTTGGAAAGGAATGCTTTCTCATAAGAGTCTGGCTTCTGGTACTAA 758
|||||||||||||||||||| |||||||| |||||| |||||||||||||| ||| ||||
Sbjct 420 GGAAGATTCTCCTTGTTGGATAGGAATGCATTCTCACAAGAGTCTGGCTTCAGGTGCTAA 479
Query 759 ATCTATGACTTCCAGGCGTTCTACTGATGATCTTAGTGGGTTTCGTAAG-TTGAATCCTT 817
| || || |||| |||||||| |||||||||||||||||||||| | || ||||||||||
Sbjct 480 AGCTGTGGCTTCGAGGCGTTCGACTGATGATCTTAGTGGGTTTCAT-AGATTGAATCCTT 538
Query 818 TGGCACCTCAGTTTATACCATCTAGTTCTAAGAAGAAACTTGAAACGGATGGGGAGAAAT 877
|||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 539 TGGCACCTCAGTTTGTACCATCTAATTCTAAGAAGAAAGTTGAAACGGATGGGGAAAAAT 598
Query 878 GTGAAGAGACTAGTTCTTCGTCGTTGAAGAAGTCTTTGTCCTCGACTTTTCCGTCGTCGT 937
||||||||| |||||||||||| |||||||||||| |||| || |||||||||||||| |
Sbjct 599 GTGAAGAGAATAGTTCTTCGTCTTTGAAGAAGTCTCTGTCTTCAACTTTTCCGTCGTCAT 658
Query 938 CTGGAGAATTTGATTTAACTGACCCTCCTCTTGAAGATGGAAGAAATGATGCAGCAGAAA 997
||||||| || ||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 659 CTGGAGAGTTCGATTTAACTGACCCTCCTCCTGAAGATGGAAGAAATGATGCAG-A-AAA 716
Query 998 A--GACAAGCATCTTGACCCACAATGCAGATGAAATTCTCGGTTTTGTAACTAGTGATAG 1055
| ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 717 ACTGACAAGCATATTGACCCACAATGCAGATAAAATTTTCGGTTTTGTATCTAGTGATAG 776
Query 1056 TGTTTCCAAGACTGTGAGCATGTTGGATTCTAGAAATGAATTCCAACCATCTAAAAGGTT 1115
| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 777 CGGTTCCAAGACCGTGAGCATTTTGGATTCTAGAAATGAATTCCAACCATCGAAAAGGTT 836
Query 1116 GGATCCTTTGGCCCCTGTCTTTGTTCCCTCTAGTGCAAAACTAGGTCCTTCTGTTCATGA 1175
||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 837 GGATCCTTTAGCCCCTGTTTTTGTTCCCTCTAGTGCAAAACTAAGTCCTTCTGTCCATGA 896
Query 1176 GAAGCTAGGAGATTTTGTGGTAAATGCATATTCAACTTCTGCTCTTGCTTCTTCACATGT 1235
||||| ||||| |||| || ||||||| || |||||||||||||| |||||||| |||
Sbjct 897 GAAGCAAGGAGCGTTTGAGGCAAATGCACATCCAACTTCTGCTCTTACTTCTTCAGATGA 956
Query 1236 TAAGTCGCTAGATAAGGGCAAGGTAGTGACATCTTCTGGAGAAGTTGGCCACAGTTTTAA 1295
|||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 957 TAAGTCACTAAATAAGGTCAAGGTAGCGACATCTTCTGGAGAAGTTGGCCACAGTTTTAA 1016
Query 1296 GAGTCAATATGGTGGTCATGATTTTGGTTCGACATCTTCATACGGTCCTTGGATAGAATC 1355
||||| |||||||||||||||||| |||| |||||||||||| ||||||||| |||||
Sbjct 1017 GAGTCGATATGGTGGTCATGATTTAAGTTCCACATCTTCATACAATCCTTGGATTGAATC 1076
Query 1356 TGAGGTTGGGATTACTGAGTATGCAAAACTAGGAAG---CAGCAACAAATCTCAAGGTCA 1412
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1077 CAACGTTGGGATTACTGAGTATGCTAAACTAGGAAGCTCCAGCAACAAATCTCAAGGTCA 1136
Query 1413 GCGGAGATTGAATCCATTGGCCCGTCAGTTCTCTCTTGCAGATGCTAAA-CAAAAGCCAT 1471
|||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||
Sbjct 1137 GCGGAGATTGAATCCATTGGCCAGTCAGTTCTCTCTTGCAGATGCTAAACCGAAAG-CAT 1195
Query 1472 ATGGCTATG-GTAAAAACCAAGCTGCAGATGATTTATCGCTAGTGGTGAATACTAGC-GG 1529
||| ||| | | ||||||||| || |||||||||||||||||||||||||||||| | ||
Sbjct 1196 ATGACTACGAG-AAAAACCAAACTTCAGATGATTTATCGCTAGTGGTGAATACTA-CTGG 1253
Query 1530 TTTATACATTCCAGCTCGTTATAGGGAGGACCATAATGTAGTAGATGCAGACTTAGCACA 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TTTATACATTCCAGCTCGTTATAGGGAGGACCATAATGTAGTAGATGCAGACTTAGCACA 1313
Query 1590 ATCCTCAGTAAATGTGGAGCGTTTTC-TTCCCAACATGTCACATGGCGGTTCTTCACTTA 1648
|||||||||| ||||||| || |||| |||||||||||||||||||| ||||||||||||
Sbjct 1314 ATCCTCAGTATATGTGGAACG-TTTCATTCCCAACATGTCACATGGCAGTTCTTCACTTA 1372
Query 1649 TAACTCCAAAGGCAGACAGTAACTTTGGGTCTACTAAGTGGATTGCGGTGGAGCCAAACC 1708
|| |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |
Sbjct 1373 TATCTCCAAAGGCAGACAGTAACATTGGGTCTACTAAGTGGTTTGCAGTGGAGCCAAATC 1432
Query 1709 CTACATTTTCAGTAAAGGGTAATAGAGATTTTAAGCATCATCTTCCATTTCATGTTGTAG 1768
||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 1433 CTACATTTTCAGTAAAGGGTAGTAGAGATCTTAAGCATCCTCTTCCATTTCATGTTGTAG 1492
Query 1769 AAACTGCAGCGAGTTCATCTACAAGCGATATGAAAGCTTTACCTGGCCCATCTCCAAAAA 1828
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1493 ATACTGCAGCGAGTTCATCTACAAGTGATATGAAAGCTTTACCTGGCCCATCTCCAAAAA 1552
Query 1829 TGGATGTGAAGAAACTACTTACAACGATGCATGGGCTGTCAGAGTTACTAACACTTGCAC 1888
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1553 TGGATGTGAAGAAACTACTTACAACGATGCATGGACTGTCAGAGTTACTAACACTTGCAC 1612
Query 1889 ATGGTTCAGAATCTTCAGATTCACCGAATGCGGAAGAGCTTGATCTCATTAACAGTACTG 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 ATGGTTCAGAATCTTCAGATTCACCGAATGCGGAAGAGCTTGATCTCATTAACAGTACTG 1672
Query 1949 TACAGAATCTCAATTTGTACATCCAAAACAACAGTCAGGAACATGCTGGGAATCAAAGCG 2008
|||||||| |||| ||||||||||||||||||| |||| | || || ||||||||||
Sbjct 1673 TACAGAATTTCAACTTGTACATCCAAAACAACACCCAGG--C-TG--GG-AATCAAAGCG 1726
Query 2009 TTGCACAATACAATTCATATGATCTAAAGCTGTTACCTAACAAGAGTAAGCTAT 2062
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TTGCACAACGCAATTCATATGATCTAAAGCTGTTACCTAACAAGAGTAAGCTAT 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100977239495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5