BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33055.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922403 jgi|Araly1|922403|scaffold_103684.1 363 2e-99
> Ahg922403 jgi|Araly1|922403|scaffold_103684.1
Length=247
Score = 363 bits (196), Expect = 2e-99
Identities = 230/247 (93%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 21 TTGAAGCTAAAGAAACTAAAAAATGTTGCTGGTGACTTTGATTGCTGAGATGATGAAGGA 80
||||||||||||||| | || ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TTGAAGCTAAAGAAAATCAAGAATGTTGCTAGTGACTTTGATTGCTGAGATGATGAAGGA 60
Query 81 GTACACGGTGGTTCTCGCCGGAGTTGTGGAGCATCTTTTTTCTCAGGCGCCTTTTCCGAG 140
|||||||||||| |||||||||||| |||||||||| || ||||| ||||||||||||||
Sbjct 61 GTACACGGTGGTGCTCGCCGGAGTTTTGGAGCATCTCTTCTCTCAAGCGCCTTTTCCGAG 120
Query 141 AAGAATCCGACTTCATATTTTATActctcttcctttccatagttccaatacctctctccc 200
|||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 121 GAGAATCCGACTTCAGATTTTATACTCTCTTCCTTTTCATAGTTCCAATTCATCTCTCCC 180
Query 201 tcttcttcttccttcccctcctccttattctcgttcttcttgatgtttcttttcttgctt 260
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 181 TCTTCTCCTTCCTTCCCCTCCTCTTTATTCTCGTTCTTCTTGATGTTTATTTTCTTGCTT 240
Query 261 actttgt 267
|||||||
Sbjct 241 ACTTTGT 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5