BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33060.2
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313859 jgi|Araly1|313859|fgenesh1_pm.C_scaffold_1002639 2673 0.0
> Ahg313859 jgi|Araly1|313859|fgenesh1_pm.C_scaffold_1002639
Length=1944
Score = 2673 bits (1447), Expect = 0.0
Identities = 1811/1979 (92%), Gaps = 55/1979 (3%)
Strand=Plus/Plus
Query 29 ATGAACCAAATAAAAAACAAAACTTTACCGGAGATGACGACGGAGCAAGCTTTGTTGTCT 88
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACCAAACAAAAAACAAAACTTTACCGGAGATGACGACGGAGCAAGCTTTGTTGTCT 60
Query 89 ATGGAAGCTTTACCTTTAGGTTTCAGATTCAGACCAACGGATGAAGAACTCATCAATCAT 148
|||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ATGGAAGCGTTACCTCTAGGTTTCAGGTTCAGACCAACGGATGAAGAACTCATCAATCAT 120
Query 149 TACCTAAGGTTAAAAATCAACGGCCGTGATTTAGAGGTTAGAGTCATCCCTGAGATCGAT 208
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TATCTAAGGTTAAAAATCAACGGCCGTGATTTAGAAGTTAGAGTCATCCCTGAGATCGAT 180
Query 209 GTTTGCAAGTGGGAACCATGGGACTTACCTGGGCTATCGGTGATAAAGACAGATGATCAA 268
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 GTTTGCAAGTGGGAACCATGGGACTTACCTGGGCTTTCGGTGATAAAGACGGATGATCAA 240
Query 269 GAATGGTTCtttttttGTCCTCGTGATCGAAAGTATCCGAGTGGTCATCGTTCTAATAGA 328
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GAATGGTTCTTTTTTTGTCCTCGTGATCGGAAGTATCCGAGTGGTCATCGTTCTAATAGA 300
Query 329 GCTACTGATATTGGTTACTGGAAAGCTACTGGGAAAGATCGAACTATTAAGTCTAAGAAG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTACTGATATTGGTTACTGGAAAGCTACTGGGAAAGATCGAACTATTAAGTCTAAGAAG 360
Query 389 ATGATTATTGGTATGAAGAAGACTCTTGTTTTCTATCGTGGAAGAGCTCCTAGAGGAGAG 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGATTATTGGTATGAAGAAGACTCTTGTTTTCTATCGTGGAAGAGCTCCTAGAGGAGAG 420
Query 449 CGTACTAATTGGATTATGCATGAGTATCGTGCTACAGACAAGGAACTAGATGGTACTGGA 508
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 421 CGTACTAATTGGATTATGCATGAGTATCGTGCCACTGATAAGGAACTAGATGGTACTGGA 480
Query 509 CCTGGTCAGAATCCGTATGTTTTGTGTCGCTTGTTCCACAAGCCTAGTGATAGTTGTGAT 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTGGTCAGAATCCGTATGTTTTGTGTCGCTTGTTCCACAAGCCTAGTGATAGTTGTGAT 540
Query 569 CCTGCACACTGTGAGGAAATAGAGAAAGTTAATTTTACTCCAACCACCACCACTAGATGC 628
||| || ||||||||||||||||||| ||||||| ||||| ||||| || |||||||
Sbjct 541 CCTACAAACTGTGAGGAAATAGAGAATGTTAATTCCACTCCTACCACTAC---TAGATGC 597
Query 629 TCTCCTGATGACACATCTTCTGAAATGGTCCAAGAAACAGCTACATCTGGTGTACATGCT 688
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 598 TCTCCTGATGACACATCTTCTGAAATGGTCCAAGAAACATCTACATCTGGTGTGCATGCT 657
Query 689 CTAGATAGATCAGATGACACTGAGAGGTGTTTAAGTGACAAGGGCAATAATGATGTGAAA 748
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 658 CTAGATAGATCAGATGATACTGAGAGGTGTTTAAGCGACAAGGG---TAATGATGTGAAA 714
Query 749 CCTGATGTTTCAGTGATAAACAATACTTCTGTCAATCACGCTGAAACTTCTCGTGCCAAA 808
|||||||||||||| || ||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 715 CCTGATGTTTCAGTTATTAACAAAACTTCTGTCAATCATGCTGAAACTTCTCACGCCAAA 774
Query 809 GACCGTAATTTGGGCAAGA-CGTTAGTAGAGGAAAATCCAC-TTCTAAGGGACGTTCCAA 866
|||||| |||||| || | | |||||||||||||||| || ||||||||||| ||||||
Sbjct 775 GACCGTGTTTTGGGAAAAAGC-TTAGTAGAGGAAAATC-ACCTTCTAAGGGACATTCCAA 832
Query 867 CTCTTCATGGACCCATCTTGAGTGAGAAATCATATTATCCAGGACAGTCAAGCATCGGTT 926
||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 833 CTCTTTATGGACCCATCTTAAGTGAGAAATCATATTATCCAGGGCAGTCAAGCATCGGTT 892
Query 927 TTGCTACATCTCACATGGATTCTATGTATTCTAGTGATTTTGGAAACTGTGATTATGGGC 986
||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 893 TTGCTACGTCACACATAGATTCGATGTATTCTAGCGATTTTGGAAACTGTGATTATGGGC 952
Query 987 TACATTTTCAAGATGGTGCCTCTGAACAAGATGCATCTTTAACAGATGTCTTGGATGAAG 1046
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 953 TACATTTTCAGGATGGTGCCTCTGAACAAGATGCATCTTTAACAGATGTCTTGGATGAGG 1012
Query 1047 TATTCCATAACCATAATGAATCCTCTAATGACAGGAAAGACTTTGT-ACTTCCGAATATG 1105
||||||||||||||||||||||||||| ||| ||||||||||||| | |||| ||||||
Sbjct 1013 TATTCCATAACCATAATGAATCCTCTAGTGAAAGGAAAGACTTTGCGA-TTCCAAATATG 1071
Query 1106 ATGCATTGGCCTGGTAATACAAGACTGTTGTCTACTGAGTACCCATTTCTCAAAGATTCT 1165
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ATGCATTGGCCTGGAAATACAAGACTGTTGTCTACTGAGTACCCATTTCTCAAAGATTCC 1131
Query 1166 GTTGCTTTTGTT-GACGGCAGTGCTGAAGTTTCCGGCTCACAGCAATTTGTTCCTGACAT 1224
||||||||| || |||||||||||||| |||| | || ||||||| ||||||||||||||
Sbjct 1132 GTTGCTTTT-TTAGACGGCAGTGCTGATGTTTTCAGCCCACAGCACTTTGTTCCTGACAT 1190
Query 1225 TTTAGCTTCTAGATGGGTCAGTGAACAGAACGTTGATAGCAAGGAGGCAGTAGAGATTCT 1284
||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||
Sbjct 1191 TTTAGCTTCCAGATGGGTCAGTGAACACAACCTTGATAGCAAGGAGGTAGTAGAGATTCA 1250
Query 1285 ATCTTCAACCGGGTCCTCTCGGACCTTGACGCCACTTCATAACAACGTTTTTGGGCAATA 1344
||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1251 ATCTTCATCAGGGTCCTCTCGGACCGTGACGCCACTTCATAACAACGTGTTTGGGCAATA 1310
Query 1345 TGCTTCATCGTCTTACGCAGCTATCGATCCATTTAACTATAATGTCAATCAGCCTGAACA 1404
||||||||||||||| ||| |||| |||||||| |||||||||||||| ||||| |||||
Sbjct 1311 TGCTTCATCGTCTTATGCAACTATTGATCCATTCAACTATAATGTCAACCAGCCCGAACA 1370
Query 1405 GTCATCCTTTGAGCAAAGCCATGTTGACCGCAACATTAGTCCCAGTAACATTTTTGAGTT 1464
||||||||||||| | | | | | ||| ||||||| | || |||
Sbjct 1371 ATCATCCTTTGAGC-------T-T---C---A---T----CCCGGTAACATATCTGGGTT 1409
Query 1465 CAAGGCTAGGTCTCGAGAGAATCAGAGAGATCTGGACTCTGTTGTGGACCAAGGCACTGC 1524
||| |||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 1410 CAATGCTAGGTCTCGAGAGAATCAGACAAATCTTGACTCTGTTGTGGACCAAGGCACTGC 1469
Query 1525 TCCTAGAAGAATTCGGCTGCAGATCGAACAGCCATTGACGCCAGTTACCAACAAGAAAGA 1584
||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1470 TCCTAGAAGAATTCGGCTGCAAATCGAACCGCCATTGACACCAGTTATCAACAAGAAAGA 1529
Query 1585 GAGAGATGCGGACAACTATGAAGAAGAAGATGAAGTACAATCTGCCATGTCCAAGGTCGT 1644
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1530 GAGAGATGCAGACAACTATGAAGAAGA---TGAAGTACAATCTGCCATGTCCAAGGTCGT 1586
Query 1645 AGAGGAAGAACCGGCTAATTTAAGTGCTCAGGGGACTGCTCAGAGGAGAATCCGCCTGCA 1704
|||||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1587 AGAGGAAGAATCAGCCAATTTAAGTACTCAGGGGACTGCTCAGAGGAGAATCCGCCTGCA 1646
Query 1705 GACGAGATTGAGGAAGCCTCTCATAACCCTAAACAATACAAAAAGAAACTCAAATGGCAG 1764
|||||||||||||||||||||||||||| ||||||| | | ||||| ||||||| |||||
Sbjct 1647 GACGAGATTGAGGAAGCCTCTCATAACCATAAACAACAGAGAAAGAGACTCAAACGGCAG 1706
Query 1765 AGAAGGA-GAAGCAAGCCAT-AG-G-AAGT----GTGAAATG---CAGGAAAAAGA--AG 1811
||| ||| |||||| ||||| | | ||| | || ||| || | | | |
Sbjct 1707 AGA-GGAAGAAGCAGGCCATCATAGCAAGGAAAAGGGAGATGTGTCATCATCATCATCAT 1765
Query 1812 -AT-AT-atcatcatcatcatcatGGCAGAAACAGAAGAAGAGCTTGGTGCAGTTTAGTA 1868
|| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1766 CATCATCATCATCATCATCATCATGGCAGAAACAGAAGAAGAGCTTGGTGCAGTATAGTA 1825
Query 1869 GTGTGGTGATAATAGTGGCGGTGATAGTTGTTTTAGTAGAAATATGGAAAGAGTCAAGAG 1928
|| |||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1826 GTATGGTGATATTAGTGGCGGTGATAGTTGTTTTAGTAGGAGTATGGAAAGAGTCAAGAG 1885
Query 1929 ATGCGAAATGTAGCTTCTTGTTTCATCAATTAGATTCCTTCAAAGGCATGTTTACTTGA 1987
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 ATGCCAAATGTAGCTTCTTGTTTCATCAATTAGATTCCTTCAAAGGCATGTTTACTTGA 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5