BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33060.2 Length=2163 Score E Sequences producing significant alignments: (Bits) Value Ahg313859 jgi|Araly1|313859|fgenesh1_pm.C_scaffold_1002639 2673 0.0 > Ahg313859 jgi|Araly1|313859|fgenesh1_pm.C_scaffold_1002639 Length=1944 Score = 2673 bits (1447), Expect = 0.0 Identities = 1811/1979 (92%), Gaps = 55/1979 (3%) Strand=Plus/Plus Query 29 ATGAACCAAATAAAAAACAAAACTTTACCGGAGATGACGACGGAGCAAGCTTTGTTGTCT 88 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAACCAAACAAAAAACAAAACTTTACCGGAGATGACGACGGAGCAAGCTTTGTTGTCT 60 Query 89 ATGGAAGCTTTACCTTTAGGTTTCAGATTCAGACCAACGGATGAAGAACTCATCAATCAT 148 |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 ATGGAAGCGTTACCTCTAGGTTTCAGGTTCAGACCAACGGATGAAGAACTCATCAATCAT 120 Query 149 TACCTAAGGTTAAAAATCAACGGCCGTGATTTAGAGGTTAGAGTCATCCCTGAGATCGAT 208 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TATCTAAGGTTAAAAATCAACGGCCGTGATTTAGAAGTTAGAGTCATCCCTGAGATCGAT 180 Query 209 GTTTGCAAGTGGGAACCATGGGACTTACCTGGGCTATCGGTGATAAAGACAGATGATCAA 268 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 181 GTTTGCAAGTGGGAACCATGGGACTTACCTGGGCTTTCGGTGATAAAGACGGATGATCAA 240 Query 269 GAATGGTTCtttttttGTCCTCGTGATCGAAAGTATCCGAGTGGTCATCGTTCTAATAGA 328 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 GAATGGTTCTTTTTTTGTCCTCGTGATCGGAAGTATCCGAGTGGTCATCGTTCTAATAGA 300 Query 329 GCTACTGATATTGGTTACTGGAAAGCTACTGGGAAAGATCGAACTATTAAGTCTAAGAAG 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCTACTGATATTGGTTACTGGAAAGCTACTGGGAAAGATCGAACTATTAAGTCTAAGAAG 360 Query 389 ATGATTATTGGTATGAAGAAGACTCTTGTTTTCTATCGTGGAAGAGCTCCTAGAGGAGAG 448 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTGATTATTGGTATGAAGAAGACTCTTGTTTTCTATCGTGGAAGAGCTCCTAGAGGAGAG 420 Query 449 CGTACTAATTGGATTATGCATGAGTATCGTGCTACAGACAAGGAACTAGATGGTACTGGA 508 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 421 CGTACTAATTGGATTATGCATGAGTATCGTGCCACTGATAAGGAACTAGATGGTACTGGA 480 Query 509 CCTGGTCAGAATCCGTATGTTTTGTGTCGCTTGTTCCACAAGCCTAGTGATAGTTGTGAT 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CCTGGTCAGAATCCGTATGTTTTGTGTCGCTTGTTCCACAAGCCTAGTGATAGTTGTGAT 540 Query 569 CCTGCACACTGTGAGGAAATAGAGAAAGTTAATTTTACTCCAACCACCACCACTAGATGC 628 ||| || ||||||||||||||||||| ||||||| ||||| ||||| || ||||||| Sbjct 541 CCTACAAACTGTGAGGAAATAGAGAATGTTAATTCCACTCCTACCACTAC---TAGATGC 597 Query 629 TCTCCTGATGACACATCTTCTGAAATGGTCCAAGAAACAGCTACATCTGGTGTACATGCT 688 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 598 TCTCCTGATGACACATCTTCTGAAATGGTCCAAGAAACATCTACATCTGGTGTGCATGCT 657 Query 689 CTAGATAGATCAGATGACACTGAGAGGTGTTTAAGTGACAAGGGCAATAATGATGTGAAA 748 ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| Sbjct 658 CTAGATAGATCAGATGATACTGAGAGGTGTTTAAGCGACAAGGG---TAATGATGTGAAA 714 Query 749 CCTGATGTTTCAGTGATAAACAATACTTCTGTCAATCACGCTGAAACTTCTCGTGCCAAA 808 |||||||||||||| || ||||| |||||||||||||| ||||||||||||| |||||| Sbjct 715 CCTGATGTTTCAGTTATTAACAAAACTTCTGTCAATCATGCTGAAACTTCTCACGCCAAA 774 Query 809 GACCGTAATTTGGGCAAGA-CGTTAGTAGAGGAAAATCCAC-TTCTAAGGGACGTTCCAA 866 |||||| |||||| || | | |||||||||||||||| || ||||||||||| |||||| Sbjct 775 GACCGTGTTTTGGGAAAAAGC-TTAGTAGAGGAAAATC-ACCTTCTAAGGGACATTCCAA 832 Query 867 CTCTTCATGGACCCATCTTGAGTGAGAAATCATATTATCCAGGACAGTCAAGCATCGGTT 926 ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 833 CTCTTTATGGACCCATCTTAAGTGAGAAATCATATTATCCAGGGCAGTCAAGCATCGGTT 892 Query 927 TTGCTACATCTCACATGGATTCTATGTATTCTAGTGATTTTGGAAACTGTGATTATGGGC 986 ||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 893 TTGCTACGTCACACATAGATTCGATGTATTCTAGCGATTTTGGAAACTGTGATTATGGGC 952 Query 987 TACATTTTCAAGATGGTGCCTCTGAACAAGATGCATCTTTAACAGATGTCTTGGATGAAG 1046 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 953 TACATTTTCAGGATGGTGCCTCTGAACAAGATGCATCTTTAACAGATGTCTTGGATGAGG 1012 Query 1047 TATTCCATAACCATAATGAATCCTCTAATGACAGGAAAGACTTTGT-ACTTCCGAATATG 1105 ||||||||||||||||||||||||||| ||| ||||||||||||| | |||| |||||| Sbjct 1013 TATTCCATAACCATAATGAATCCTCTAGTGAAAGGAAAGACTTTGCGA-TTCCAAATATG 1071 Query 1106 ATGCATTGGCCTGGTAATACAAGACTGTTGTCTACTGAGTACCCATTTCTCAAAGATTCT 1165 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 ATGCATTGGCCTGGAAATACAAGACTGTTGTCTACTGAGTACCCATTTCTCAAAGATTCC 1131 Query 1166 GTTGCTTTTGTT-GACGGCAGTGCTGAAGTTTCCGGCTCACAGCAATTTGTTCCTGACAT 1224 ||||||||| || |||||||||||||| |||| | || ||||||| |||||||||||||| Sbjct 1132 GTTGCTTTT-TTAGACGGCAGTGCTGATGTTTTCAGCCCACAGCACTTTGTTCCTGACAT 1190 Query 1225 TTTAGCTTCTAGATGGGTCAGTGAACAGAACGTTGATAGCAAGGAGGCAGTAGAGATTCT 1284 ||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||| Sbjct 1191 TTTAGCTTCCAGATGGGTCAGTGAACACAACCTTGATAGCAAGGAGGTAGTAGAGATTCA 1250 Query 1285 ATCTTCAACCGGGTCCTCTCGGACCTTGACGCCACTTCATAACAACGTTTTTGGGCAATA 1344 ||||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1251 ATCTTCATCAGGGTCCTCTCGGACCGTGACGCCACTTCATAACAACGTGTTTGGGCAATA 1310 Query 1345 TGCTTCATCGTCTTACGCAGCTATCGATCCATTTAACTATAATGTCAATCAGCCTGAACA 1404 ||||||||||||||| ||| |||| |||||||| |||||||||||||| ||||| ||||| Sbjct 1311 TGCTTCATCGTCTTATGCAACTATTGATCCATTCAACTATAATGTCAACCAGCCCGAACA 1370 Query 1405 GTCATCCTTTGAGCAAAGCCATGTTGACCGCAACATTAGTCCCAGTAACATTTTTGAGTT 1464 ||||||||||||| | | | | | ||| ||||||| | || ||| Sbjct 1371 ATCATCCTTTGAGC-------T-T---C---A---T----CCCGGTAACATATCTGGGTT 1409 Query 1465 CAAGGCTAGGTCTCGAGAGAATCAGAGAGATCTGGACTCTGTTGTGGACCAAGGCACTGC 1524 ||| |||||||||||||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 1410 CAATGCTAGGTCTCGAGAGAATCAGACAAATCTTGACTCTGTTGTGGACCAAGGCACTGC 1469 Query 1525 TCCTAGAAGAATTCGGCTGCAGATCGAACAGCCATTGACGCCAGTTACCAACAAGAAAGA 1584 ||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||| Sbjct 1470 TCCTAGAAGAATTCGGCTGCAAATCGAACCGCCATTGACACCAGTTATCAACAAGAAAGA 1529 Query 1585 GAGAGATGCGGACAACTATGAAGAAGAAGATGAAGTACAATCTGCCATGTCCAAGGTCGT 1644 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1530 GAGAGATGCAGACAACTATGAAGAAGA---TGAAGTACAATCTGCCATGTCCAAGGTCGT 1586 Query 1645 AGAGGAAGAACCGGCTAATTTAAGTGCTCAGGGGACTGCTCAGAGGAGAATCCGCCTGCA 1704 |||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1587 AGAGGAAGAATCAGCCAATTTAAGTACTCAGGGGACTGCTCAGAGGAGAATCCGCCTGCA 1646 Query 1705 GACGAGATTGAGGAAGCCTCTCATAACCCTAAACAATACAAAAAGAAACTCAAATGGCAG 1764 |||||||||||||||||||||||||||| ||||||| | | ||||| ||||||| ||||| Sbjct 1647 GACGAGATTGAGGAAGCCTCTCATAACCATAAACAACAGAGAAAGAGACTCAAACGGCAG 1706 Query 1765 AGAAGGA-GAAGCAAGCCAT-AG-G-AAGT----GTGAAATG---CAGGAAAAAGA--AG 1811 ||| ||| |||||| ||||| | | ||| | || ||| || | | | | Sbjct 1707 AGA-GGAAGAAGCAGGCCATCATAGCAAGGAAAAGGGAGATGTGTCATCATCATCATCAT 1765 Query 1812 -AT-AT-atcatcatcatcatcatGGCAGAAACAGAAGAAGAGCTTGGTGCAGTTTAGTA 1868 || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1766 CATCATCATCATCATCATCATCATGGCAGAAACAGAAGAAGAGCTTGGTGCAGTATAGTA 1825 Query 1869 GTGTGGTGATAATAGTGGCGGTGATAGTTGTTTTAGTAGAAATATGGAAAGAGTCAAGAG 1928 || |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1826 GTATGGTGATATTAGTGGCGGTGATAGTTGTTTTAGTAGGAGTATGGAAAGAGTCAAGAG 1885 Query 1929 ATGCGAAATGTAGCTTCTTGTTTCATCAATTAGATTCCTTCAAAGGCATGTTTACTTGA 1987 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1886 ATGCCAAATGTAGCTTCTTGTTTCATCAATTAGATTCCTTCAAAGGCATGTTTACTTGA 1944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81398853565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5