BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33080.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473486 jgi|Araly1|473486|fgenesh2_kg.1__3440__AT1G33080.1 2316 0.0
Ahg922408 jgi|Araly1|922408|scaffold_103689.1 1406 0.0
> Ahg473486 jgi|Araly1|473486|fgenesh2_kg.1__3440__AT1G33080.1
Length=1532
Score = 2316 bits (1254), Expect = 0.0
Identities = 1445/1538 (94%), Gaps = 9/1538 (1%)
Strand=Plus/Plus
Query 46 ATGG-CGAGAAGAGAAGGAGAAGTGACGGAGACCCTTCTGAAAAAGTCGACGGAGAATCG 104
|||| || || ||| |||||| ||||||||||| || ||||||||| || |||||||| |
Sbjct 1 ATGGACG-GAGGAGGAGGAGAGGTGACGGAGACTCTGCTGAAAAAGACGGCGGAGAATGG 59
Query 105 CGGAGAAGATCGGGATGGGTTAGGGATGAAGGAGAAGGTTTGGAGGGAATCTAAAAAGCT 164
| ||||||| |||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 60 CCGAGAAGA---GGATGGATTGGGGATGAAGGAGAAGGTTTGGAGGGAATCTAAGAAGCT 116
Query 165 ATGGGTTGTGGCTGGGCCGGCGATCTTTACGAGGTTCTCCACGTCCGGACTATCTTTGAT 224
||||||||||||||| || |||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 117 ATGGGTTGTGGCTGGACCTGCGATCTTTACGAGATTCTCTACGTCCGGACTTTCTTTGAT 176
Query 225 AAGTCAAGCTTTCATTGGCCATCTTGGCTCTACCGAGTTGGCCGCTTACTCCATCACTCT 284
|| |||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||
Sbjct 177 AACTCAAGCTTTCATTGGCCACCTTGGCCCAACCGAGTTGGCTGCTTACTCCATCACTCT 236
Query 285 CACCGTTCTCCTCCGTTTTAGTAATGGTATCTTGTTAGGCATGGCTAGTGCGCTAGAAAC 344
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 CACCGTTCTCCTCCGTTTTAGTAATGGTATCTTGTTAGGCATGGCTAGTGCCCTAGAAAC 296
Query 345 ACTATGTGGTCAAGCCTATGGAGCAAAACAATATCATATGCTTGGGATCTACCTCCAAAG 404
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACTATGTGGTCAAGCCTACGGAGCAAAACAATATCATATGCTTGGGATCTACCTCCAAAG 356
Query 405 ATCATGGATCGTCCTCACAGGCTGTACCATTTGCCTTATGCCCATCTACATCTTTGCAGG 464
||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||
Sbjct 357 GTCATGGATCGTCCTCACAGGCTGTACCATTTGCCTCATGCCCATATACATCTTTTCGGG 416
Query 465 CCCTATTCTCTTGGCTTTAGGTCAAGAGGAACGCCTTGTTCGTGTGGCTCGGATCATAGC 524
|||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 417 CCCTATCCTCTTGGCCTTAGGTCAAGAGGAACGCCTAGTCCGTGTGGCTCGGATCATAGC 476
Query 525 TCTATGGGTCATAGGCATCAACATCTCCTTTGTGCCTTCCTTCACTTGCCAAATGTTCCT 584
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCTATGGGTCATAGGCATTAACATCTCCTTTGTGCCTTCCTTCACTTGCCAAATGTTCCT 536
Query 585 CCAAGCTCAGAGTAAGAACAAGATCATCGCCTACGTTGCTGCTGTTTCGTTAGGAGTCCA 644
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 537 CCAAGCTCAGAGTAAGAACAAGATCATCGCCTACGTGGCTGCTGTCTCGTTAGGGGTCCA 596
Query 645 TGTCTTCTTGTCGTGGCTTC-TAGTGGTTCATTTTGATTTCGGGATCGCTGGTGCCATGA 703
|||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGTCTTGTTGTCGTGGC-TCTTAGTGGTTCATTTTGATTTCGGGATCGCTGGTGCCATGA 655
Query 704 CCTCTTCGCTCGTAGCACATTGGTTGCCTAACATTGCGCAGGTTTTATTTGTCACATGCG 763
| || |||||| |||| |||||||||||||||||||||||| | | || || || ||||
Sbjct 656 CTTCATCGCTCATAGCGCATTGGTTGCCTAACATTGCGCAGCTCCTGTTCGTTACGTGCG 715
Query 764 GTGGATGTACGGAAACGTGGAGAGGATTCTCTTGGTTGGCTTTCAAGGATCTTTGGCCCG 823
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTGGATGTAAGGACACGTGGAGAGGATTCTCTTGGTTGGCTTTCAAGGATCTTTGGCCCG 775
Query 824 TTTTTAAACTATCTGTATCTTCCGGTGGCATGATTTGCTTGGAGCTATGGTACAACTCGA 883
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTTTTAAACTATCAGTATCTTCCGGTGGCATGATTTGCTTGGAGCTATGGTACAACTCGA 835
Query 884 TCTTGATTCTGCTCACGGGAAACTTGAAAAACGCTGAGGTTGCTCTTAACGCACTTGCAA 943
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 836 TCTTGATTCTGCTCACGGGAAACTTAAAAAACGCTGAGGTGGCCCTTAACGCACTTGCAA 895
Query 944 TCTGCATCAATATAAATGCACTGGAGATGATGGTAGCCTTCGGCTTCATGGCAGCAGCAA 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCTGCATCAATATAAATGCACTGGAGATGATGGTAGCCTTCGGCTTCATGGCAGCAGCAA 955
Query 1004 GTGTAAGAGTTTCAAACGAGATCGGGAGTGGGAATTCTAATGGAGCCAAATTTGCAACAA 1063
||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||
Sbjct 956 GTGTAAGAGTTTCAAACGAGATCGGGAGTGGAAACTCTAAAGGAGCCAAATTTGCGACAA 1015
Query 1064 TGGTTGTGGTTTCGACATCACTTTCGATAGGAATCATCTTCTTCTTTATCTTCCTGTTTT 1123
| | || ||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 1016 TAATAGTAGTTTCGACATCACTTTCAATAGGAATCATCATCTTCTTTGTCTTCCTGTTTT 1075
Query 1124 TAAGAGAAAGGGTTTCATACATTTTTACAACAAGTGAAGCTGTTGCCACACAAGTAGCCG 1183
|||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1076 TAAGAGGAAGGGTTTCATACATTTTTACAACAAGTGAAGCTGTCGCCGCACAAGTAGCCG 1135
Query 1184 ATCTTTCTCCACTCTTGGCCTTCTCCATTCTCTTGAACAGTATTCAACCAGTTCTCTCTG 1243
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1136 ATCTTTCTCCACTCTTGGCCTTCTCCATTCTCTTGAACAGTGTTCAGCCAGTTCTCTCTG 1195
Query 1244 GAGTTGCTGTTGGAGCGGGATGGCAGAAATATGTTACGGT-CGTTAACCTTGCTTGCTAT 1302
||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||
Sbjct 1196 GAGTTGCTGTTGGAGCGGGATGGCAAAAATACGTTACG-TACGTTAACCTTGCTTGCTAT 1254
Query 1303 TACCTTGTTGGAATTCCTTCCGGTCTTTTTCTTGGCTATGTCGTTGGTTTACAAGTCAAA 1362
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1255 TACCTTGTTGGAATTCCTTCCGGTGTTTTTCTTGGCTATGTCGTTGGTTTACAAGTCAAA 1314
Query 1363 GGTGTTTGGTTAGGAATGATTTTCGGAATCTTCGTTCAGACTTGCGTGCTTACAGTAATG 1422
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1315 GGTGTTTGGTTAGGATTGATTTTCGGAATCTTCGTTCAGACTTGCGTGCTTACCGTAATG 1374
Query 1423 ACTATGAGAACAGACTGGGATCAACAGGTGTCTTCGTCGTTGAAACGTTTGAACCGTTGG 1482
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1375 ACTATGAGGACAGACTGGGATCAACAGGTGTCTTCGTCGCTGAAACGTTTGAACCGTTGG 1434
Query 1483 GTTGAACCAGAATCCCCAAGTCGAAACCAAACTTTACAAAACGAATGATGGTGAAGATTG 1542
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1435 GTTGAACCAGAATCCCCAAGTCGAAATCAAACTTTACAAAACGAATGATTGTGAAGATTT 1494
Query 1543 AAGTAAAACTTGAGTTTGTATTCGAATTTTGAATTTCT 1580
|||||||||||||||||||| ||||||||| ||| |||
Sbjct 1495 AAGTAAAACTTGAGTTTGTAATCGAATTTTAAATCTCT 1532
> Ahg922408 jgi|Araly1|922408|scaffold_103689.1
Length=1525
Score = 1406 bits (761), Expect = 0.0
Identities = 1219/1437 (85%), Gaps = 44/1437 (3%)
Strand=Plus/Plus
Query 82 CTGAAAAAGTCGACGGAGAATC-GCGGAGAAGATCG-GGATGGGTTAGGGATGAAGGAGA 139
||||| ||| || ||| ||| | |||||||||| | ||||| ||||||| ||||| | |
Sbjct 57 CTGAATAAGACGGCGGCGAA-CGGCGGAGAAGA-AGAGGATGAGTTAGGGTTGAAGCAAA 114
Query 140 AGGTTTGGAGGGAATCTAAA-AAGCTATGGGTTGTGGCTGG-GCCGGCGATCTTTACGAG 197
||||||||| ||||| ||| ||||||||||||||||| || |||||||||||| |||||
Sbjct 115 AGGTTTGGATTGAATC-AAAGAAGCTATGGGTTGTGGC-GGCGCCGGCGATCTTCACGAG 172
Query 198 GTTCTCCACGTCCGGACTATCTTTGATAAGTCAAG-CTTTCATTGGCCATCTTGGCT-CT 255
|||||| |||| |||| | || | ||||||| || ||||||| ||||||||||| | ||
Sbjct 173 GTTCTCAACGTTCGGAGTTTCAATAATAAGTC-AGTCTTTCATCGGCCATCTTGG-TCCT 230
Query 256 ACCGAGTTGGCCGCTTACTCCATCA-CTCTCACCGTTCTCCTCCGTTTTAGTAATGGTAT 314
| ||||||||||||||||| |||| || |||||||||||||||| ||||||||||||||
Sbjct 231 ATAGAGTTGGCCGCTTACTCTATCACCT-TCACCGTTCTCCTCCGGTTTAGTAATGGTAT 289
Query 315 CTTGTTAGGCATGGCTAGTGCGCTAGAAACACTATGTGGTCAAGCCTATGGAGCAAAACA 374
||||||||| ||||| ||||| | ||||||||||||||||||||||| ||||| |||||
Sbjct 290 CTTGTTAGGTATGGCCAGTGCATTGGAAACACTATGTGGTCAAGCCTACGGAGCTAAACA 349
Query 375 ATATCATATGCTTGGGATCTACCTCCAAAGATCATGGATCGTCCTCACAGGCTGTACCAT 434
| |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 350 AAATCATATGCTCGGGATCTACCTCCAAAGGTCATGGATCGTCCTCACAGGTTGTACCAT 409
Query 435 TTGCCTTATGCCCATCTACATCTTTGCAGGCCCTATTCTCTTGGCTTTAGGTCAAGAGGA 494
|||||| | |||| |||| |||||| |||||||||| ||||| || ||||||||||||||
Sbjct 410 TTGCCTCACGCCCGTCTATATCTTTTCAGGCCCTATCCTCTTAGCCTTAGGTCAAGAGGA 469
Query 495 ACGCCTTGTTCGTGTGGCTCGGATCATAGCTCTATGGGTCATAGGCATCAACATCTCCTT 554
|||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 470 ACGCATTGTCCGTGTGGCTCGGATCATAGCCCTATGGGTCATAGGCATCAACTTCTCCTT 529
Query 555 TGTGCCTTCCTTCACTTGCCAAATGTTCCTCCAAGCTCAGAGTAAGAACAAGATCATCGC 614
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 530 TGTGCCTTCCTTCACTTGCCAAATGTTCCTCCAAGCTCAGAGCAAAAACAAGATCATTGC 589
Query 615 CTACGTTGCTGCTGTTTCGTTAGGAGTCCATGTCTTCTTGTCGTGGCTTCT-AGTGGTTC 673
|||||| |||||||| || ||||| |||||||| |||||||||||||| || | ||||||
Sbjct 590 CTACGTGGCTGCTGTCTCCTTAGGGGTCCATGTTTTCTTGTCGTGGCTACTTA-TGGTTC 648
Query 674 ATTTTGATTTCGGGATCGCTGGTGCCATGACCTCTTCGCTCGTAGCACAT-TGGTTGCCT 732
|||| ||||||||||| ||||||| ||||||||| | || || || | |||||||||
Sbjct 649 ATTTCAATTTCGGGATCACTGGTGCTATGACCTCTACTCTAGTTGCGT-TCTGGTTGCCT 707
Query 733 AACATTGCGCAGGTTTTATTTGTCACATGCGGTGGATGTACGGAAACGTGGAGAGGATTC 792
||||||||||| | || |||||||| |||||||| |||| ||| || ||||||||||||
Sbjct 708 AACATTGCGCAACTCTTGTTTGTCACGTGCGGTGGGTGTAAGGACACATGGAGAGGATTC 767
Query 793 TCT-TGGTTGGCTTTCAAGGATCTT-TGGCCCGTTTTTAAACTATCTGTATCTTCCGGTG 850
|| || ||||| ||||| ||| || ||||| || || ||||||||| | ||||||||||
Sbjct 768 ACTATG-TTGGCCTTCAAAGAT-TTATGGCCTGTCTTCAAACTATCTCTGTCTTCCGGTG 825
Query 851 GCATGATTTGCTTGGAGCTATGGTACAACTCGATCTTGATTCTGCTCACGGGAAACTTGA 910
| ||| |||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||
Sbjct 826 GAATGCTTTGCTTGGAACTATGGTACAACTCGATCTTGGTACTGCTCACTGGAAATTTGA 885
Query 911 AAAACGCTGAGGTTGCTCTTAACGCACTTGCAATCTGCATCAATATAAATGCACTGGAGA 970
||||||| || || |||||| | ||||| ||||||||| |||| ||||||| | ||||||
Sbjct 886 AAAACGCAGAAGTGGCTCTTGATGCACTAGCAATCTGCCTCAACATAAATGGATTGGAGA 945
Query 971 TGATGGTAGC-CTTCGGCTTCATGGCAGCAGCAAGTGTAAGAGTTTCAAACGAGA-TCGG 1028
||||| |||| ||| || || ||||||| |||||||||||||| || ||||| | ||||
Sbjct 946 TGATGATAGCACTTGGGTTTT-TGGCAGCTGCAAGTGTAAGAGTCTCCAACGA-ACTCGG 1003
Query 1029 GAGTGGGAATTCTAATGGAGCCAAATTTGCAACAATGGTTGTGGTTT-CGACATCACTTT 1087
||||| || | || |||||||| ||||||||| || | ||||| | |||||||| |
Sbjct 1004 TAGTGGAAACCCCAAAGGAGCCAAGTTTGCAACATTGACAGCGGTTTTC-ACATCACTAT 1062
Query 1088 CGATAGGAATCAT-CTTCTTCTTTATCTTCCTGTTTTTAAGAGAAAGGGTTTCATACATT 1146
| |||||||| | || ||||| |||||| ||||| |||||| ||| ||||| ||||||
Sbjct 1063 CCATAGGAATGGTTCTA-TTCTTCATCTTCTTGTTTCTAAGAGGAAGAGTTTCCTACATT 1121
Query 1147 TTTACAACAAGTGAAGCTGTTGCCA-CAC-AAGTAGCCGATCTTTCTCCACTCTTGGCCT 1204
|| || |||||||||||||| || | | | |||||||||||||||||||||| || || |
Sbjct 1122 TTCACTACAAGTGAAGCTGTCGC-AGC-CGAAGTAGCCGATCTTTCTCCACTTTTAGCTT 1179
Query 1205 TCTCCATTCTCTTGAACAGTATTCAACCAGTTCTCTCTGGAGTTGCTGTTGGAGCGGGAT 1264
| ||||| ||| |||| ||| ||||||| ||||| ||||||||||| || ||||||||||
Sbjct 1180 TTTCCATCCTCATGAATAGTGTTCAACCCGTTCTTTCTGGAGTTGCGGTCGGAGCGGGAT 1239
Query 1265 GGCA-GAAATATGTTACGGT-CGTTAACCTTGCTTGCTATTACCTTGTTGGAATTCC--T 1320
|||| | | |||||||| | |||||||||||||||||||||||| || |||||||| |
Sbjct 1240 GGCAAGGA-TATGTTACT-TACGTTAACCTTGCTTGCTATTACCTAGTGGGAATTCCAAT 1297
Query 1321 TCCGGTCTTTTTCTTGGCTATGTCGTTGGTTTACAAGTCAAAGGTGTTTGGTTAGGAATG 1380
| ||| || | ||||| || ||||||||||| ||||| |||||||| ||| | ||||||
Sbjct 1298 T--GGTATTATCCTTGGTTACGTCGTTGGTTTGCAAGTGAAAGGTGTATGGATCGGAATG 1355
Query 1381 AT-TTTCGGAATCTTCGTTCAGACTTGCGTGCTTACAGTAATGACTATGAGAACAGACTG 1439
| ||| ||||| |||||||||||||| |||||||| || |||||| |||||||||| ||
Sbjct 1356 CTCTTT-GGAATTTTCGTTCAGACTTGTGTGCTTACCGTCATGACTCTGAGAACAGATTG 1414
Query 1440 GGATCAACAGGTGTCTTCGTCGTTGAAACGTTTGAACCGTTGGGTTGAACCAGAATC 1496
|||||||||||||||| |||| |||| ||| || ||||| ||||||| ||| |||||
Sbjct 1415 GGATCAACAGGTGTCTACGTCATTGAGACGCTTAAACCGGTGGGTTGTACCCGAATC 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5