BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33090.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913131 jgi|Araly1|913131|Al_scaffold_0001_3385 2322 0.0
Ahg922408 jgi|Araly1|922408|scaffold_103689.1 1881 0.0
> Ahg913131 jgi|Araly1|913131|Al_scaffold_0001_3385
Length=1485
Score = 2322 bits (1257), Expect = 0.0
Identities = 1414/1490 (95%), Gaps = 10/1490 (1%)
Strand=Plus/Plus
Query 161 ATGGCCGGAGAAGGAGGAGAGCTCACGGCGGCTTTGTTGAAAAAGACGACTGAGAACGGA 220
|||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 1 ATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGCTGAATAAGACGTTTGAGAACGGC 60
Query 221 GGAGAAGAAAATGATGAGTTAGGGTTGAAGGAAAAAGTTTGGATTGAATCAAAGAAGCTA 280
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 GGAGAAGAAAAGGATGAGTTAGGGTTGAAGGAAAAGGTTTGGATAGAATCAAAGAAGCTA 120
Query 281 TGGGTTGTGGCGGCGCCATCGATCTTCACGAAGTTCTCTACGTACGGAGTTTCATTGGTA 340
|||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 121 TGGGTTGTGGCGGCCCCATCGATCTTCACAAAATTCTCTACGTACGGAGTCTCATTGGTA 180
Query 341 ACTCAAGGCTTT-GTTGGCCATATTGGCCCAACCGAGTTGGCCGCTTACTCTATCACCTT 399
|||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCAAGG-TTTCGTTGGCCATCTTGGCCCAACCGAGTTGGCCGCTTACTCTATCACCTT 239
Query 400 CACCGTTCTCCTCCGTTTCAGTAATGGTATCTTGTTAGGTATGGCCAGTGCACTAGGAAC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CACCGTTCTCCTCCGTTTCAGTAATGGTATCTTGTTAGGTATGGCCAGTGCACTAGGAAC 299
Query 460 ATTATGTGGTCAAGCCTACGGAGCCAAACAATACCATATGCTCGGGAT-TCACCTCCAAA 518
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 300 ATTATGTGGTCAAGCCTACGGAGCCAAACAATACCATATGCTCGGGATCT-ACCTCCAAA 358
Query 519 GGTCATGGATCGTCCTTACAGGTTGTACCATTTGCATCATGCCCATCTTCATCTTTTCAG 578
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 359 GGTCATGGATCGTCCTCACAGGTTGTACCATTTGCATCATGCCCGTCTTCATCTTCTCAG 418
Query 579 GCCCGATCCTCTTAGCCTTAGGTCAAGAGGACCACATTGTTCGTGTGGCTCGGGTCATAG 638
|||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 419 GCCCTATCCTCTTAGTCTTAGGTCAAGAGGAACGCATTGTTCGTGTGGCTCGGGTCATAG 478
Query 639 CCCTATGGCTCATAGCCATCAACTTCACCTTCGTACCCGCCTTCACTTGCCAAATATTCC 698
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCCTATGGCTCATAGGCATCAACTTCACCTTCGTACCCGCCTTCACTTGCCAAATATTCC 538
Query 699 TCCAATCTCAGAGCAAGAACAAGATCATCGCCTACGTGTCTGCTGTAACCTTAGGGCTCC 758
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 539 TCCAATCTCAGAGCAAGAACAAGATCATCGCCTATGTGTCTGCTGTCACCTTAGGGCTCC 598
Query 759 ATGTTTTCTTCTCGTGGCTCCTAGTGGTTCATTTCAATTTCGGGATCACTGGTGCAATGA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 ATGTTTTCTTCTCGTGGCTCCTAGTGGTTCATTTCAATTTCGGGATCACTGGTGCTATGA 658
Query 819 CCTCTACGCTAGTTGCGTTCTGGATGCCTAACATTGTGCAGCTCTTGTAT-GTCACATCC 877
||||||||||||||||||||||| |||||||||||| ||||||||| | | ||||| | |
Sbjct 659 CCTCTACGCTAGTTGCGTTCTGGTTGCCTAACATTGCGCAGCTCTTAT-TCGTCACGTGC 717
Query 878 GGTGGGTGTAAGGATACATGGAGAGGATTCACTATGTTGGCCTTCAAAGATTTATGGCCC 937
|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 718 GGTGGGTGTAAGGACACATGGAAAGGATTCACTATGTTGGTCTTCAAAGATTTATGGCCC 777
Query 938 GTCTTCAAACTATCTTTGTCTTCCGGTGGAATGGTTTGCTTGGAGTTATGGTACAACTCG 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTCTTCAAACTATCTTTGTCTTCCGGTGGAATGGTTTGCTTGGAGTTATGGTACAACTCG 837
Query 998 ATATTAGTATTGCTCACTGGGAATTTGAAAAACGCAGAGGTGGCGATTGATGCACTAGCA 1057
|||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 838 ATATTAGTATTGCTCACTGGAAATATGAAAAACGCAGAGGTGGCTCTTGATGCACTAGCA 897
Query 1058 ATCTGCATCAACGTAAATGCACTGCAGATGATGATAGCACTTGGGTTTTTGGCAGCAGTA 1117
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 898 ATCTGCATCAACGTAAATGCACTGCAGATGATGATATCACTTGGGTTTTTGGCAGCAGTA 957
Query 1118 AGTGTAAGAGTGTCCAACGAGCTCGGTAGGGGAAACCCCGAAGGCGCCAAATTTGCAACA 1177
|||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||
Sbjct 958 AGTGTAAGAGTGTCCAACGAGCTCGGTATGGGAAACCCCAAAGGAGCCAAATTTGCAACA 1017
Query 1178 ATCG-TAGCGGTTTTCACGTCACTCTCTATAGGATTAGTTCTATTCTTCGTCTTCTTGTT 1236
| | ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 1018 TT-GATAGCGGTTTTCACGTCACTCTCTATAGGAATAGTTCTGTTCTTTGTCTTCTTGTT 1076
Query 1237 TCTAAGGGGAAGAATTTCGTACATTTTCACTACAAGTGAAGCTGTGGCAGCCGAAGTCGC 1296
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1077 TCTAAGGGGAAGAATTTCCTACATTTTCACTACAAGTGAAGCCGTCGCAGCCGAAGTTGC 1136
Query 1297 TGATCTTTCTCCACTTTTAGCATTTTCCATCCTCTTGAACAGTGTTCAACCCGTTCTCTC 1356
|||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 1137 CGATCTTTCTCCACTCTTAGCATTTTCCATCCTCCTGAATAGTATTCAACCCGTTCTCTC 1196
Query 1357 AGGAGTGGCAGTGGGAGCGGGATGGCAAGGATATGTGGCTTACATTAACCTTGCTTGCTA 1416
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1197 TGGAGTGGCAGTCGGAGCGGGATGGCAAGGATATGTGGCTTACGTTAACCTTGCTTGCTA 1256
Query 1417 TTACCTTCTCGGAATTCCTGTTGGTCTTG-TCCTTGGTTACGTTGTTGGTTTGCAAGTCA 1475
||||||||| ||||||||||||||| | | ||||||||||||| ||||||||||||||||
Sbjct 1257 TTACCTTCTGGGAATTCCTGTTGGTGT-GATCCTTGGTTACGTCGTTGGTTTGCAAGTCA 1315
Query 1476 AAGGTGTATGGATAGGAATGCTTTTTGGAATATTTGTTCAGACTTGTGTGCTTACCATCA 1535
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 1316 AAGGTGTATGGATTGGAATGCTCTTTGGAATATTCGTTCAGACTTGTGTGCTTAGCATCA 1375
Query 1536 TGACTCTCAGAACAGATTGGGATCAACAGGTATCTACGTCGTTGAAAAATATAAACCGGT 1595
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1376 TGACTCTCAGAACAGATTGGGATCAACAGGTATCTACGTCGTTGAGAAATATAAACCGGT 1435
Query 1596 GGGTTGTACCAGAATCTAGAGATGCAAATCAAATTTCATCAGAGGAATAA 1645
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1436 GGGTTGTACCAGAATCTAGAGATGCAAACCAAATTTCATCAGAGGAATAA 1485
> Ahg922408 jgi|Araly1|922408|scaffold_103689.1
Length=1525
Score = 1881 bits (1018), Expect = 0.0
Identities = 1354/1517 (89%), Gaps = 20/1517 (1%)
Strand=Plus/Plus
Query 155 TCCAAGATGGCCGGAGAAGGAGGAGAGCTCACGGCGGCTTTGTTGAAAAAGACGACTGAG 214
|||||||||||||||| ||||||||||||||||||||||||| |||| |||||| | | |
Sbjct 15 TCCAAGATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGCTGAATAAGACGGCGGCG 74
Query 215 AACGGAGGAGAAGAAAATGATGAGTTAGGGTTGAAGGAAAAAGTTTGGATTGAATCAAAG 274
||||| ||||||||| | |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 75 AACGGCGGAGAAGAAGAGGATGAGTTAGGGTTGAAGCAAAAGGTTTGGATTGAATCAAAG 134
Query 275 AAGCTATGGGTTGTGGCGGCGCCATCGATCTTCACGAAGTTCTCTACGTACGGAGTTTCA 334
||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||
Sbjct 135 AAGCTATGGGTTGTGGCGGCGCCGGCGATCTTCACGAGGTTCTCAACGTTCGGAGTTTCA 194
Query 335 TTGGTAACTCAAGGCTTTGTT-GGCCATATTGGCCCAACCGAGTTGGCCGCTTACTCTAT 393
| ||| ||| | |||| | |||||| |||| || | ||||||||||||||||||||
Sbjct 195 ATAATAAGTCA-GTCTTTCATCGGCCATCTTGGTCCTATAGAGTTGGCCGCTTACTCTAT 253
Query 394 CACCTTCACCGTTCTCCTCCG-TTTCAGTAATGGTATCTTGTTAGGTATGGCCAGTGCAC 452
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 254 CACCTTCACCGTTCTCCTCCGGTTT-AGTAATGGTATCTTGTTAGGTATGGCCAGTGCAT 312
Query 453 TAGGAA-CATTATGTGGTCAAGCCTACGGAGCCAAACAATACCATATGCTCGGGAT-TCA 510
| |||| || |||||||||||||||||||||| |||||| | |||||||||||||| | |
Sbjct 313 T-GGAAACACTATGTGGTCAAGCCTACGGAGCTAAACAAAATCATATGCTCGGGATCT-A 370
Query 511 CCTCCAAAGGTCATGGATCGTCCTTACAGGTTGTACCATTTGCATCATGCCCATCT-TCA 569
|||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||| | |
Sbjct 371 CCTCCAAAGGTCATGGATCGTCCTCACAGGTTGTACCATTTGCCTCACGCCCGTCTAT-A 429
Query 570 TCTTTTCAGGCCCGATCCTCTTAGCCTTAGGTCAAGAGGACCACATTGTTCGTGTGGCTC 629
||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 430 TCTTTTCAGGCCCTATCCTCTTAGCCTTAGGTCAAGAGGAACGCATTGTCCGTGTGGCTC 489
Query 630 GGGTCATAGCCCTATGGCTCATAGCCATCAACTTCACCTTCGTACCCGCCTTCACTTGCC 689
|| |||||||||||||| |||||| |||||||||| |||| || || ||||||||||||
Sbjct 490 GGATCATAGCCCTATGGGTCATAGGCATCAACTTCTCCTTTGTGCCTTCCTTCACTTGCC 549
Query 690 AAATATTCCTCCAATCTCAGAGCAAGAACAAGATCATCGCCTACGTGTCTGCTGTAACCT 749
|||| ||||||||| |||||||||| ||||||||||| ||||||||| ||||||| |||
Sbjct 550 AAATGTTCCTCCAAGCTCAGAGCAAAAACAAGATCATTGCCTACGTGGCTGCTGTCTCCT 609
Query 750 TAGGGCTCCATGTTTTCTTCTCGTGGCTCCT-AGTGGTTCATTTCAATTTCGGGATCACT 808
||||| ||||||||||||| |||||||| || | ||||||||||||||||||||||||||
Sbjct 610 TAGGGGTCCATGTTTTCTTGTCGTGGCTACTTA-TGGTTCATTTCAATTTCGGGATCACT 668
Query 809 GGTGCAATGACCTCTACGCTAGTTGCGTTCTGGATGCCTAACATTGTGCAGCTCTTGTAT 868
||||| ||||||||||| ||||||||||||||| |||||||||||| ||| ||||||| |
Sbjct 669 GGTGCTATGACCTCTACTCTAGTTGCGTTCTGGTTGCCTAACATTGCGCAACTCTTGTTT 728
Query 869 GTCACATCCGGTGGGTGTAAGGATACATGGAGAGGATTCACTATGTTGGCCTTCAAAGAT 928
||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 729 GTCACGTGCGGTGGGTGTAAGGACACATGGAGAGGATTCACTATGTTGGCCTTCAAAGAT 788
Query 929 TTATGGCCCGTCTTCAAACTATCTTTGTCTTCCGGTGGAATGGTTTGCTTGGAGTTATGG 988
|||||||| ||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 789 TTATGGCCTGTCTTCAAACTATCTCTGTCTTCCGGTGGAATGCTTTGCTTGGAACTATGG 848
Query 989 TACAACTCGATATTAGTATTGCTCACTGGGAATTTGAAAAACGCAGAGGTGGCGATTGAT 1048
||||||||||| || ||| |||||||||| ||||||||||||||||| ||||| |||||
Sbjct 849 TACAACTCGATCTTGGTACTGCTCACTGGAAATTTGAAAAACGCAGAAGTGGCTCTTGAT 908
Query 1049 GCACTAGCAATCTGCATCAACGTAAATGCACTGCAGATGATGATAGCACTTGGGTTTTTG 1108
||||||||||||||| ||||| |||||| | || ||||||||||||||||||||||||||
Sbjct 909 GCACTAGCAATCTGCCTCAACATAAATGGATTGGAGATGATGATAGCACTTGGGTTTTTG 968
Query 1109 GCAGCAGTAAGTGTAAGAGTGTCCAACGAGCTCGGTAGGGGAAACCCCGAAGGCGCCAAA 1168
||||| | |||||||||||| |||||||| |||||||| ||||||||| |||| |||||
Sbjct 969 GCAGCTGCAAGTGTAAGAGTCTCCAACGAACTCGGTAGTGGAAACCCCAAAGGAGCCAAG 1028
Query 1169 TTTGCAACAATCGT-AGCGGTTTTCACGTCACTCTCTATAGGATTAGTTCTATTCTTCGT 1227
||||||||| | | |||||||||||| ||||| || |||||| | |||||||||||| |
Sbjct 1029 TTTGCAACATT-GACAGCGGTTTTCACATCACTATCCATAGGAATGGTTCTATTCTTCAT 1087
Query 1228 CTTCTTGTTTCTAAGGGGAAGAATTTCGTACATTTTCACTACAAGTGAAGCTGTGGCAGC 1287
||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1088 CTTCTTGTTTCTAAGAGGAAGAGTTTCCTACATTTTCACTACAAGTGAAGCTGTCGCAGC 1147
Query 1288 CGAAGTCGCTGATCTTTCTCCACTTTTAGCATTTTCCATCCTCTTGAACAGTGTTCAACC 1347
|||||| || |||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1148 CGAAGTAGCCGATCTTTCTCCACTTTTAGCTTTTTCCATCCTCATGAATAGTGTTCAACC 1207
Query 1348 CGTTCTCTCAGGAGTGGCAGTGGGAGCGGGATGGCAAGGATATGTGGCTTACATTAACCT 1407
|||||| || ||||| || || ||||||||||||||||||||||| ||||| |||||||
Sbjct 1208 CGTTCTTTCTGGAGTTGCGGTCGGAGCGGGATGGCAAGGATATGTTACTTACGTTAACCT 1267
Query 1408 TGCTTGCTATTACCTTCTCGGAATTCCTGTTGGTCTTGTCCTTGGTTACGTTGTTGGTTT 1467
||||||||||||||| | |||||||| ||||| || ||||||||||||| ||||||||
Sbjct 1268 TGCTTGCTATTACCTAGTGGGAATTCCAATTGGTATTATCCTTGGTTACGTCGTTGGTTT 1327
Query 1468 GCAAGTCAAAGGTGTATGGATAGGAATGCTTTTTGGAATATTT-GTTCAGACTTGTGTGC 1526
|||||| |||||||||||||| |||||||| |||||||| ||| ||||||||||||||||
Sbjct 1328 GCAAGTGAAAGGTGTATGGATCGGAATGCTCTTTGGAAT-TTTCGTTCAGACTTGTGTGC 1386
Query 1527 TTACCATCATGACTCTCAGAACAGATTGGGATCAACAGGTATCTACGTCGTTGAAAAA-T 1585
||||| |||||||||| ||||||||||||||||||||||| |||||||| |||| | |
Sbjct 1387 TTACCGTCATGACTCTGAGAACAGATTGGGATCAACAGGTGTCTACGTCATTGAGACGCT 1446
Query 1586 ATAAACCGGTGGGTTGTACCAGAATCTAGAGATGCAAATCAAATTTCATCAGAGGAATAA 1645
||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||
Sbjct 1447 -TAAACCGGTGGGTTGTACCCGAATCTAGAGACGTAAACCAAATTTCATCAGAGGAATAA 1505
Query 1646 -TTCGTTTGGAT-TATG 1660
|| ||| ||| ||||
Sbjct 1506 ATTAATTTTGATATATG 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5