BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33140.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473492 jgi|Araly1|473492|fgenesh2_kg.1__3446__AT1G33140.1 1181 0.0
> Ahg473492 jgi|Araly1|473492|fgenesh2_kg.1__3446__AT1G33140.1
Length=735
Score = 1181 bits (639), Expect = 0.0
Identities = 703/735 (96%), Gaps = 0/735 (0%)
Strand=Plus/Plus
Query 48 GAGAGCCGTCAGGGAGAGCAAAACAAAGATCGGAGAAGATGAAGACGATTCTTTCTTCCG 107
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GAGAGCCGTCAGAGAGAGCAAAACAAAGATCGGAAAAGATGAAGACGATTCTTTCTTCCG 60
Query 108 AAACGATGGACATCCCCGACAGTGTTACCATCAAGGTTCACGCTAAAGTGATCGAAGTCG 167
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 AGACGATGGACATCCCCGACAGCGTTACCATCAAGGTTCACGCTAAAGTGATCGAAGTCG 120
Query 168 AAGGACCTCGCGGGAAGCTTGTTCGCGATTTCAAGCATCTCAACCTCGATTTCCAGCTGA 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGACCTCGCGGGAAGCTTGTTCGCGATTTCAAGCATCTCAACCTCGATTTCCAGCTGA 180
Query 228 TCAAGGATCCAGAGACTGGAAAGAAGAAGCTTAAGATCGATTCGTGGTTTGGAACACGCA 287
|||| || || |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCAAAGACCCTGAGACTGGGAAGAAGAAGCTTAAGATCGATTCGTGGTTTGGATCACGCA 240
Query 288 AAACCAGCGCCTCCATCAGAACCGCTCTTAGCCACGTCGATAACTTGATCTCCGGTGTTA 347
||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||
Sbjct 241 AAACCAGCGCCTCCATCAGAACCGCTCTTAGTCACGTTGATAACCTCATCTCCGGTGTTA 300
Query 348 CCAGAGGTTTCCGTTACAAGATGAGGTTCGTGTACGCCCATTTTCCCATCAACGCCTCCA 407
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 301 CCAGAGGTTTCCGTTACAAGATGAGGTTCGTGTACGCTCATTTTCCGATCAACGCCTCTA 360
Query 408 TCGGCGGTGACGGAAAGTCTATCGAGATCCGTAACTTCCTTGGCGAGAAGAAGGTGAGGA 467
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGGTGGTGATGGAAAGTCTATCGAGATCCGTAACTTCCTTGGCGAGAAGAAGGTGAGGA 420
Query 468 AGGTAGAGATGTTGGATGGTGTAACCATTGTTCGATCTGAGAAGGTGAAGGATGAGATTG 527
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 AGGTAGAGATGTTGGATGGTGTAACCATTGTTCGATCTGAGAAGGTCAAGGATGAGATTG 480
Query 528 TTCTTGACGGTAACGACATCGAGCTTGTTTCAAGGTCATGCGCTTTGATCAACCAGAAAT 587
||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TTCTTGATGGTAACGATATCGAGCTTGTTTCAAGGTCATGCGCTCTGATCAACCAGAAAT 540
Query 588 GTCACGTGAAGAAGAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAAAA 647
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 541 GTCACGTGAAGAAGAAGGATATCAGGAAGTTCCTTGACGGTATCTATGTTAGCGAGAAAA 600
Query 648 GCAAGATCGTAGAGGAAGAATGAATGCCCATATCATCGTCTTAGCTCCTATTTCTTGTCT 707
||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||
Sbjct 601 GCAAGATCGTAGAGGAAGAATGAATGCTCATTTCCTCATCTTAGCTCCTATTTCTTGTCT 660
Query 708 TTTGAATGTTAGTTTCGTTTTATGGACCAAATCCACCGGTGTTGCAAAACTCTGGCTATC 767
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 CTTGAATGTTAGTTTCGTTTTATGGACCAAATCTACCGGTGTTGCAAAACTCTGGCTATC 720
Query 768 CCTTGTTCCCTTTTT 782
||||||||| |||||
Sbjct 721 CCTTGTTCCTTTTTT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5