BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33170.1
Length=2240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473493 jgi|Araly1|473493|fgenesh2_kg.1__3447__AT1G33170.1 3493 0.0
Ahg327211 jgi|Araly1|327211|fgenesh1_pm.C_scaffold_6002431 1576 0.0
Ahg490494 jgi|Araly1|490494|fgenesh2_kg.6__3628__AT4G00750.1 150 4e-35
> Ahg473493 jgi|Araly1|473493|fgenesh2_kg.1__3447__AT1G33170.1
Length=2232
Score = 3493 bits (1891), Expect = 0.0
Identities = 2130/2242 (95%), Gaps = 30/2242 (1%)
Strand=Plus/Plus
Query 1 GATGGTGGATCCCTTTTTCTCGTGCTTCGAGCTCCAATAAACTTTTCTTACA-TTTTTAA 59
||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1 GATGGTGGATCCCCTTTTCTCGTGCTTCGAGCTCCAATAACCTTTTTTTACATTTTTTAA 60
Query 60 TCCA-TTTTTACGTTGATAtttttttATAAAATTTCCACCACCTTACAAAAGATTTTAGC 118
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACATTTTTTACGTTGAT-TTTTTTTATAAAATTTCCACCACCTTACAAAAGATTTTAGC 119
Query 119 TTTTTGTGTTACTAATTAAAATCAG-AACAAAAGTTGCAAG---TC---T--TTCATCTC 169
||| ||||||||| | | |||||| || |||||||||||| || | ||||||||
Sbjct 120 TTTCTGTGTTACT-A-T--AATCAGAAAAAAAAGTTGCAAGTACTCTTTTGCTTCATCTC 175
Query 170 TATGCA-CAAATGGCGAAAGAGAACAGTAGTCAT-AGCCTTGCAGAAGCAAAGAGAAAGA 227
|||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 176 TATGCAGAAAATGGCGAAAGAGAACAGTAGTCATCA-CCTTGCGGAAGCAAAGAGAAAGA 234
Query 228 GACTCACTTGGATTCTTTGTGTAAGTGGACTTTGCATATTGTCTTATGTTCTTGGATCTT 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GACTCACTTGGATTCTTTGTGTAAGTGGACTTTGCATATTGTCTTATGTTCTTGGATCTT 294
Query 288 GGCAAACCAACACTGTCCCAACTTCTTCCTCTGAGGCTTACTCAAGAATGGGATGTGATG 347
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GGCAAAACAACACTGTCCCAACTTCTTCCTCTGAGGCTTACTCAAGAATGGGATGTGATG 354
Query 348 AAACATCAACAACCACTCGGGCTCAGACTACTCAGACTCAAACAAATCCTTCTTCTGACG 407
||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 AAACAACTACAACGACTCGGGCTCAGACTACTCAGACTCAAACAAATCCTTCTTCTGATG 414
Query 408 ATACTTCT-TCCTCTTTGTCTTCCTCAGAACCAGTTGAGTTAGATTTCGAAAGCCATCAC 466
||| ||| || |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 415 ATA-ATCTCTCGTCTTTGTCCTCTTCAGAACCAGTTGAGTTAGATTTCGAAAGCCATCAC 473
Query 467 AAACTCGAGCTGAAGATTACGAATCAAACCGTAAAGTACTTT-GAGCCATGTGACATGTC 525
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 474 AAACTCGAGCTGAAGATTACGAATCAAACGGTAAAGTA-TTTCGAGCCATGTGACATGTC 532
Query 526 TTTGAGTGAGTACACTCCATGTGAAGATCGAGAGAGAGGAAGAAGATTTGATAGGAACAT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTTGAGTGAGTACACTCCATGTGAAGATCGAGAGAGAGGAAGAAGATTTGATAGGAACAT 592
Query 586 GATGAAGTACAGAGAGAGACATTGTCCTTCTAAAGATGAGCTTCTTTATTGTCTGATTCC 645
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 593 GATGAAATACAGAGAGAGACATTGTCCTTCTAAAGATGAGCTTCTTTATTGTTTGATTCC 652
Query 646 TCCTCCACCAAACTACAAGATTCCATTCAAGTGGCCTCAAAGTAGAGATTATGCTTGGTA 705
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 653 TCCTCCACCAAACTACAAGATTCCATTCAAATGGCCTCAAAGTAGAGACTATGCTTGGTA 712
Query 706 CGACAACATTCCACACAAGGAGCTTAGTATTGAGAAAGCTATCCAGAACTGGATTCAAGT 765
||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 713 CGACAACATCCCACACAAAGAGCTAAGTATTGAGAAAGCTATTCAGAATTGGATTCAAGT 772
Query 766 AGAAGGGGAAAGATTCAGGTTCCCTGGTGGTGGCACAATGTTTCCACGTGGAGCTGATGC 825
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TGAAGGAGAAAGATTTAGATTCCCTGGTGGTGGCACAATGTTTCCACGTGGAGCTGATGC 832
Query 826 TTACATTGATGATATTGCTAGACTCATTCCTCTTACTGATGGAGCCATTAGAACAGCTAT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTACATTGATGATATTGCTAGACTCATTCCTCTTACTGATGGAGCCATTAGAACAGCTAT 892
Query 886 TGATACAGGATGTGGTGTGGCGAGTTTTGGTGCATACTTGTTGAAGAGGGATATTGTGGC 945
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 893 TGATACTGGATGTGGTGTGGCGAGTTTTGGTGCTTACTTGTTGAAGAGGGATATTGTGGC 952
Query 946 TATGTCATTTGCTCCAAGGGACACTCATGAAGCTCAAGTTCAATTTGCGTTGGAACGTGG 1005
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TATGTCATTTGCTCCAAGAGACACTCATGAAGCTCAAGTTCAATTTGCGTTGGAACGTGG 1012
Query 1006 AGTTCCTGCGATTATCGGGATTATGGGATCAAGAAGGCTTCCTTATCCAGCTAGAGCTTT 1065
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGTTCCTGCGATTATCGGTATTATGGGATCAAGAAGGCTTCCTTATCCAGCTAGAGCTTT 1072
Query 1066 TGATCTTGCTCACTGTTCTCGTTGTTTGATTCCTTGGTTTCAAAATGATGGTTTGTACTT 1125
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1073 TGATCTTGCTCACTGTTCTCGTTGTTTGATTCCTTGGTTTCAGAACGATGGTTTGTACTT 1132
Query 1126 GACCGAAGTGGACCGGGTTTTAAGACCGGGCGGTTATTGGATCCTTTCGGGTCCACCGAT 1185
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GACCGAAGTAGACCGGGTTTTAAGACCGGGCGGTTATTGGATCCTTTCGGGTCCACCGAT 1192
Query 1186 CAACTGGAAGAAATACTGGAAAGGCTGGGAAAGATCACAAGAGGATTTGAAGCAAGAGCA 1245
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1193 CAACTGGAAGAAATACTGGAAAGGCTGGGAAAGATCACAAGAGGATTTAAAGCAAGAGCA 1252
Query 1246 AGATTCTATAGAAGATGCAGCAAGAAGTCTTTGTTGGAAGAAAGTTACAGAAAAGGGTGA 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1253 AGATTCTATAGAAGATGCAGCAAGAAGTCTTTGTTGGAAGAAAGTTACAGAAAAAGGTGA 1312
Query 1306 TTTATCAATTTGGCAAAAGCCTATCAATCACGTTGAGTGTAACAAACTCAAACGAGTTCA 1365
||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||
Sbjct 1313 TTTATCAATTTGGCAAAAGCCCATAAATCACATTGAGTGTAACAAACTCAAACGAGTTCA 1372
Query 1366 CAAAACTCCTCCTCTATGCAGTAAATCAGATTTACCCGATTTTGCTTGGTACAAAGATTT 1425
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1373 CAAATCTCCTCCTCTATGCAGTAAATCAGATCTACCCGATTTTGCTTGGTACAAAGATTT 1432
Query 1426 GGAATCTTGTGTAACACCATTACCAGAAGCAAACAGTTCAGACGAATTCGCAGGCGGTGC 1485
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1433 GGAATCTTGTGTAACACCATTGCCAGAAGCAAACAGTCCAGACGAATTCGCAGGCGGTGC 1492
Query 1486 ATTGGAGGATTGGCCAAACCGAGCTTTTGCGGTGCCACCTAGGATAATCGGGGGAACCAT 1545
||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||| ||
Sbjct 1493 ATTGGAGGATTGGCCTGACCGAGCTTTCGCGGTCCCACCTAGGATAATCCGGGGAACTAT 1552
Query 1546 TCCGGACATTAATGCTGAGAAATTCAGAGAAGACAATGAAGTGTGGAAGGAGAGAATATC 1605
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1553 ACCGGACACCAATGCTGAGAAATTCAGAGAAGACAATGAAGTGTGGAAGGAGAGAATAAC 1612
Query 1606 ATATTACAAACAGATAATGCCAGAGCTTTCAAGAGGAAGATTTAGGAACATAATGGACAT 1665
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1613 ATATTACAAACAGATAATGCCTGAGCTTTCAAGGGGAAGATTCAGGAACATAATGGACAT 1672
Query 1666 GAATGCATACTTGGGAGGATTTGCTGCGGCAATGATGAAATATCCATCTTGGGTTATGAA 1725
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GAATGCTTACCTCGGAGGATTTGCTGCGGCAATGATGAAATATCCATCTTGGGTTATGAA 1732
Query 1726 TGTGGTTCCTGTGGATGCTGAGAAGCAAACGTTAGGGGTTATCTTTGAACGAGGATTTAT 1785
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1733 TGTGGTTCCTGTGGATGCCGAGAAGCAAACATTAGGGGTTATTTTTGAACGAGGATTTAT 1792
Query 1786 AGGGACTTATCAAGATTGGTGTGAAGGATTCTCTACGTATCCGAGAACTTATGATTTGAT 1845
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1793 AGGGACTTATCAAGATTGGTGTGAAGGATTCTCTACGTATCCAAGAACTTATGATTTGAT 1852
Query 1846 TCATGCTGGTGGATTGTTCAGCATTTATGAGAACAGGTGTGATGTTACATTAATACTACT 1905
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1853 TCATGCTGGTGGATTGTTCAGCATTTATGAGAACAGGTGTGATGTGACATTGTTACTACT 1912
Query 1906 TGAGATGGATAGAATTTTGAGACCAGAAGGAACCGTGGTGTTTAGAGACACTGTGGAAAT 1965
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 TGAGATGGATAGAATCTTGAGACCAGAAGGAACCGTGGTGTTTAGAGACACTGTGGAAAT 1972
Query 1966 GTTGACGAAGATACAAAGCATAACCAATGGAATGAGGTGGAAGAGTCGGATTTTGGATCA 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 GTTGACGAAGATACAAAGCATAACCAATGGAATGAGGTGGAAGAGTCGGATTTTGGATCA 2032
Query 2026 TGAGAGAGGTCCTTTTAATCCTGAGAAGATCCTTCTCGCTGTAAAATCCTATTGGACCGG 2085
||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2033 TGAGAAAGGTCCTTTTAACCCTGAGAAGATCCTTCTCGCTGTAAAATCCTACTGGACCGG 2092
Query 2086 TCCTTCTTCTTAGCTAGTTCTAGCTTTCTTGGAACTCTCTACTCTAAtctttttcttatc 2145
|||||||||||||||||||| |||||||||||||||||||||||||||||| || | |||
Sbjct 2093 TCCTTCTTCTTAGCTAGTTCCAGCTTTCTTGGAACTCTCTACTCTAATCTTCTT-T-ATC 2150
Query 2146 ttgtgtgtctcatctttgt--tttatttttaat---tgtttgttttaAAAGATTTCTATG 2200
||||||| ||||||||||| ||| ||||| | ||||||||| ||||||||||||||
Sbjct 2151 TTGTGTGCCTCATCTTTGTCCTTTTTTTTTTTTGACTGTTTGTTTAAAAAGATTTCTATG 2210
Query 2201 ATTATATAAGAAAATACAGGGA 2222
||||||||||||||||||||||
Sbjct 2211 ATTATATAAGAAAATACAGGGA 2232
> Ahg327211 jgi|Araly1|327211|fgenesh1_pm.C_scaffold_6002431
Length=1896
Score = 1576 bits (853), Expect = 0.0
Identities = 1447/1730 (84%), Gaps = 56/1730 (3%)
Strand=Plus/Plus
Query 381 AGACTCAAACAAATCCTTCTTC-T-GACGATACTTCTTCCTCTT--T-GTCTTCCTCAGA 435
|||| ||| ||||||||||||| | | || | | || ||||||| | || || |||||
Sbjct 158 AGACGCAATCAAATCCTTCTTCTTCGTCG-T-CCTCGTCCTCTTCCTCATCATCTTCAGA 215
Query 436 ACCAGTTGAGTTAGATTTCGAAAGCCATCA-CAAACTCGAGCTGAA-GATTACGAATCAA 493
||| ||| ||||||||| ||||| || | || | | ||| | || || || || |||
Sbjct 216 GTCAGCTGAATTAGATTTCAAAAGCTATAATCAGA-TTGAGTTAAAGGA-AACAAACCAA 273
Query 494 ACCGTAAAGTACTTTGAGCCATGTGACATGTCTTTGAGTGAGTACACTCCATGTGAAGAT 553
||| | ||||||||||| |||||||| | ||| | |||||||||||||| |||||||||
Sbjct 274 ACCATCAAGTACTTTGAACCATGTGAGTTATCTCTCAGTGAGTACACTCCTTGTGAAGAT 333
Query 554 CGAGAGAGAGGAAGAAGATTTGATAGGAACATGATGAAGTACAGAGAGAGACATTGTCCT 613
||| | |||||||||||||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct 334 CGACAAAGAGGAAGAAGATTCGATAGGAACATGATGAAATATAGAGAAAGACATTGTCCT 393
Query 614 TCTAAAGATGAGCTTCTTTATTGTCTGATTCCTCCTCCACCAAACTACAAGATTCCATTC 673
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 394 TCAAAAGATGAGCTTCTTTATTGTTTGATTCCTCCTCCACCAAACTACAAGATTCCTTTC 453
Query 674 AAGTGGCCTCAAAGTAGAGATTATGCTTGGTACGACAACATTCCACACAAGGAGCTTAGT 733
|| ||||| ||||| ||||| ||||||||||| ||||| || || |||||||| || |||
Sbjct 454 AAATGGCCACAAAGCAGAGACTATGCTTGGTATGACAATATCCCTCACAAGGAACTCAGT 513
Query 734 ATTGAGAAAGCTA-TCCAGAACTGGATTCAAGTAGAAGGGGAAAGATTCAGGTTCCCTGG 792
|||||||||| | | || |||||||||||||||||||| || | || || ||||||||
Sbjct 514 GTTGAGAAAGC-AGTTCAAAACTGGATTCAAGTAGAAGGCGACCGGTTTAGATTCCCTGG 572
Query 793 TGGTGGCACAATGTTTCCACGTGGAGCTGATGCTTACATTGATGATATTGCTAGACTCAT 852
||| || || |||||||| |||||||| |||||||| ||||||||||||||||| |||||
Sbjct 573 TGGCGGAACGATGTTTCCTCGTGGAGCCGATGCTTATATTGATGATATTGCTAGGCTCAT 632
Query 853 TCCTCTTACTGATGGAGCCATTAGAACAGCTATTGATACAGGATGTGGTGTGGCGAGTTT 912
||||||||||||||| | || |||||||||||||| || ||||||||||| || |||||
Sbjct 633 TCCTCTTACTGATGGTGGAATCAGAACAGCTATTGACACTGGATGTGGTGTTGCAAGTTT 692
Query 913 TGGTGCATACTTGTTGAAGAGGGATATTGTGGCTATGTCATTTGCTCCAAGGGACACTCA 972
|||||| ||| | |||||||| || ||| ||||| |||| |||||||||||||| |||||
Sbjct 693 TGGTGCTTACCTCTTGAAGAGAGACATTATGGCTGTGTCTTTTGCTCCAAGGGATACTCA 752
Query 973 TGAAGCTCAAGTTCAATTTGCGTTGGAACGTGGAGTTCCTGCGATTATCGGGATTATGGG 1032
||||||||| || || ||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 753 TGAAGCTCAGGTACAGTTTGCTTTAGAACGTGGAGTTCCTGCGATAATCGGGATTATGGG 812
Query 1033 ATCAAGAAGGCTTCCTTATCCAGCTAGAGCTTTTGATCTTGCTCACTGTTCTCGTTGTTT 1092
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 813 ATCAAGAAGGCTTCCTTATCCAGCTAGAGCTTTTGATCTTGCTCATTGTTCTCGTTGTTT 872
Query 1093 GATTCCTTGGTTTCAAAATGATGGTTTGTAC-TTGACCGAAGTGGACCGGGTTTTAAGAC 1151
||| ||||||||| ||||||||||||||||| || | || || ||||||||||||||||
Sbjct 873 GATCCCTTGGTTTAAAAATGATGGTTTGTACCTT-ATGGAGGTTGACCGGGTTTTAAGAC 931
Query 1152 CGGGCGGTTATTGGATCCTTTCGGGTCCACCGATCAACTGGAAGAAA-TACTGGAAAGGC 1210
|||||||||| |||||||||||||| |||||||| |||||||| | | ||||||| |||
Sbjct 932 CGGGCGGTTACTGGATCCTTTCGGGACCACCGATTAACTGGAA-ACAGTACTGGAGAGGG 990
Query 1211 TGGGAAAGATCACAAGAGGATTTGAAGCAAGAGCAAGATTCTATAGAAGATGCAGCAA-G 1269
||||| ||| || | |||||||||||| ||||||||||||| |||||||||| ||||| |
Sbjct 991 TGGGAGAGAACAGAGGAGGATTTGAAGAAAGAGCAAGATTCAATAGAAGATGTAGCAAAG 1050
Query 1270 AAGTCTTTGTTGGAAGAAAGTTACAGAAAAGGGTGATTTATCAATTTGGCAAAAGCCTAT 1329
| ||||||||||||||||||| || ||||| ||||| ||||| ||||||||||||||| |
Sbjct 1051 A-GTCTTTGTTGGAAGAAAGTGACTGAAAAAGGTGACTTATCCATTTGGCAAAAGCCTCT 1109
Query 1330 CAATCACGTTGAGTGTAACAAA-CTCAAACGAGTTCACAA-AACTC-C-TCCTCTATGCA 1385
||||||| |||||||||| ||| ||||||| | |||| || || | ||| ||||| |
Sbjct 1110 CAATCACATTGAGTGTAA-AAAGCTCAAACAAA---ACAATAAGTCGCCTCCGCTATGTA 1165
Query 1386 GTAAATCAGATTTACCCG-ATTTTGCTTGGTACAAAGATTTGGAATCTTGTGTAACACCA 1444
| |||||| || || |||| |||||||||||||| |||||| |||| ||||||||
Sbjct 1166 GC---TCAGATA-ACGCGGATTTCGCTTGGTACAAAGACTTGGAAACTTGCATAACACCA 1221
Query 1445 TTACCAGAAGCAAACAGTTCAGACGAATTC-GCAGGCGGTGCA-TTGGAGGATTGGCCAA 1502
||||||||| |||||| | |||| |||| | ||||||||||| ||| |||||||||||
Sbjct 1222 TTACCAGAAACAAACAATCCAGATGAAT-CAGCAGGCGGTGCGCTTG-AGGATTGGCCAG 1279
Query 1503 ACCGAGCTTTTGCGGTGCCACCTAGGATAATCGGGGGAACCATTCCGGACATTAATGCTG 1562
||||||| || ||||| || || || || ||| | ||||| || || ||||| || || |
Sbjct 1280 ACCGAGCATTCGCGGTTCCTCCAAGAATCATCAGAGGAACTATACCAGACATGAACGCGG 1339
Query 1563 AGAAATTCAGAGAAGACAATGAAGTGTGGAAGGAGAGAATATCATATTACAA-ACAGATA 1621
|||||||||||||||||||||| || ||||| ||||||||| || ||||||| | |||||
Sbjct 1340 AGAAATTCAGAGAAGACAATGAGGTTTGGAAAGAGAGAATAACACATTACAAGA-AGATA 1398
Query 1622 ATGCCAGAGCTTTCA-AGAGGAAGATTTAGGAACATAATGGACATGAATGCATACTTGGG 1680
| |||||||||||| | |||||||| |||||||||||||||||||| || | | | ||
Sbjct 1399 GTCCCAGAGCTTTCACAT-GGAAGATTCAGGAACATAATGGACATGAACGCTTTCCTCGG 1457
Query 1681 AGGATTTGCTGCGGCAATGATGAAATATCCATCTTGGGTTATGAATGTGGTTCCTGTGGA 1740
||||| ||||| | ||| |||||||||| || ||||| ||||| || || || || ||
Sbjct 1458 CGGATTCGCTGCTTCCATGCTGAAATATCCCTCATGGGTCATGAACGTTGTCCCAGTCGA 1517
Query 1741 TGCTGAGAAGCAAACGTTAGGGGTTATCTTTGAACGAGGATTTATAGGGACTTATCAAGA 1800
||| ||||||||||| |||| || |||| ||||| ||||| || || || ||||| ||
Sbjct 1518 TGCAGAGAAGCAAACACTAGGTGTGATCTACGAACGTGGATTGATTGGAACATATCATGA 1577
Query 1801 TTGGTGTGAAGGATTCTCTACGTATCCGAGAACTTATGATTTGATTCATGCTGGTGGATT 1860
||||||||||||||||| || ||||| |||||||||||| |||||||||| || |||||
Sbjct 1578 CTGGTGTGAAGGATTCTCAACATATCCAAGAACTTATGATATGATTCATGCAGGAGGATT 1637
Query 1861 GTTCAGCATTTATGA-GAACA--GGTGTGATGTT-ACATTAATACTACTTG-AGATGGAT 1915
||||||| || || | ||||| |||||||| || || || ||| | ||| ||||||||
Sbjct 1638 GTTCAGC-TT-AT-ACGAACACCGGTGTGAT-TTGACGTTGATATTG-TTGGAGATGGAT 1692
Query 1916 AGAATTTTGAGACCAGAAGGAACCGTGGTGTTTAGAGACACTGTGGAAATGTTGA-CGAA 1974
|||| ||||||||||||||||| || ||||| ||||| | |||||| | ||||| | ||
Sbjct 1693 CGAATATTGAGACCAGAAGGAACAGTTGTGTTGAGAGATAATGTGGAGACGTTGAAC-AA 1751
Query 1975 GATACA-AAGCATAACCAATGGAATGAGGTGGAAGAGTCGGATTTTGGATCATGAGAGAG 2033
| || | ||| ||| || ||||||| ||||||||||| || |||||||||||| ||
Sbjct 1752 GGTAGAGAAG-ATAGTGAAGGGAATGAAGTGGAAGAGTCAAATAGTGGATCATGAGAAAG 1810
Query 2034 GTCCTTTTAATCCTGAGAAGATCCTTCTCGCTGT-AAAATCCTATTGGAC 2082
|||||||||||||||||||||| ||| | ||||| |||| | ||||||||
Sbjct 1811 GTCCTTTTAATCCTGAGAAGATTCTTGTTGCTGTTAAAA-CTTATTGGAC 1859
> Ahg490494 jgi|Araly1|490494|fgenesh2_kg.6__3628__AT4G00750.1
Length=2065
Score = 150 bits (81), Expect = 4e-35
Identities = 324/441 (73%), Gaps = 18/441 (4%)
Strand=Plus/Plus
Query 788 CCTGGTGGTGGCACAATGTTTCCACGTGGAGCTGATGCTTACATTGATGATATTGCTA-G 846
||||||||||| || ||||||||||||||||||||||||||||| || || || | | |
Sbjct 620 CCTGGTGGTGGTACGATGTTTCCACGTGGAGCTGATGCTTACATCGACGAGATCGG-ACG 678
Query 847 ACTCATTCCTCTTACTGATGGAGCCATTAGAACAGCTATTGATACAGGATGTGGTGTGGC 906
| || ||| | || ||| | ||| | ||||| |||||||| |||||||| || ||
Sbjct 679 GTTGATAAATCTCAAAGACGGATCAATTCGGACAGCCATTGATACTGGATGTGGGGTAGC 738
Query 907 GAGTTTTGGTGCATA-CTTGTTGAAGAGGGATATTGTGGCTATGTCATTTGCTCCAAGGG 965
||| ||||| || || || | | |||| | || || | ||||| ||||| ||||| |
Sbjct 739 GAGCTTTGGGGCGTATCTAAT-GTCGAGGAACATAGTAACGATGTCGTTTGCACCAAGAG 797
Query 966 ACACTCATGAAGCTCAAGTTCAATTTGCG-TTG-GAACGTGGAGTTCCTGCGATTATCGG 1023
|||| || |||||||||||||| || || ||| || | ||||| |||||||| || ||
Sbjct 798 ACACACACGAAGCTCAAGTTCAGTTCGCACTTGAGA--GAGGAGTCCCTGCGATCATAGG 855
Query 1024 -GA-TTATGGGATCAAGAAGGCTTCC-TTATCCAGCTAGAGCTTTTGATC-TTGCTCACT 1079
| ||| | || | || || || || ||| || ||||| || || | ||||||| |
Sbjct 856 AGTGTTA-GCC-TCTATCAGACTCCCATT-TCCGGCCAGAGCCTTCGA-CATTGCTCATT 911
Query 1080 GTTCTCGTTGTTTGATTCCTTGGTTTCAAAATGATGGTTTGTA-CTTGACCGAAGTGGAC 1138
| ||||| ||| | ||||||||| ||| | |||| ||| || || || |||||
Sbjct 912 GCTCTCGATGTCTCATTCCTTGGGGCCAATACAATGGGACGTATCT-GATAGAGGTGGAT 970
Query 1139 CGGGTTTTAAGACCGGGCGGTTATTGGATCCTTTCGGGTCCACCGATCAACTGGAAGAAA 1198
|||| | |||||||| || |||||||| || || || || ||||| |||||| ||| |
Sbjct 971 AGGGTACTGAGACCGGGTGGGTATTGGATTCTGTCTGGACCGCCGATTAACTGGCAGAGA 1030
Query 1199 TACTGGAAAGGCTGGGAAAGA 1219
| ||||| || ||||| |||
Sbjct 1031 CATTGGAAGGGTTGGGAGAGA 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84331802430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5