BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33220.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913138 jgi|Araly1|913138|Al_scaffold_0001_3392 1328 0.0
Ahg941587 jgi|Araly1|941587|scaffold_602131.1 1168 0.0
Ahg488942 jgi|Araly1|488942|fgenesh2_kg.6__2076__AT5G20330.1 1062 0.0
Ahg941608 jgi|Araly1|941608|scaffold_602152.1 370 1e-101
> Ahg913138 jgi|Araly1|913138|Al_scaffold_0001_3392
Length=1062
Score = 1328 bits (719), Expect = 0.0
Identities = 913/1004 (91%), Gaps = 24/1004 (2%)
Strand=Plus/Plus
Query 1 ATGGTCTATTCCTCTAAGAAGCTGTTCTTGTTCTTCCTCTCGTGCATTATGCTGACTTTC 60
||||||||||||||||||||| || |||||||||||||||| ||||||||||||| ||||
Sbjct 1 ATGGTCTATTCCTCTAAGAAGTTGCTCTTGTTCTTCCTCTCATGCATTATGCTGATTTTC 60
Query 61 AACTATAACACTAGTGGCTTCGTAG-C-C-GC----AGCA--------AA-TA-GC--AT 101
||||| ||||||||||||||||||| | | || |||| || || || ||
Sbjct 61 AACTACAACACTAGTGGCTTCGTAGCCGCAGCAAATAGCATTGGCTTGAACTATGCAAAT 120
Query 102 ---A--GGCTTGAACTACGGCCTCCTCGGAGATAACTTCCCAACTCCATCCAATGTTCTC 156
| ||||||||||| |||||||| ||||||||| ||||| | || |||||||| |||
Sbjct 121 AGCATTGGCTTGAACTATGGCCTCCTTGGAGATAACCTCCCAGCACCGTCCAATGTACTC 180
Query 157 AACCTTTACAAGTCCATAGGCATTACAAAAATCCGAATCTTCGACCCAAAAACAGAGGTT 216
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 181 AACCTTTACAAGTCCATAGGCATTACAAAAATCCGAATCTTCGACCCGAACACAGAGGTT 240
Query 217 CTTAACGCCTTACGCGGCCACCGTAATATTGAAGTCACTGTTGGCGTGAGGGACCAGGAC 276
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 241 CTTAACGCCTTACGCGGCCACAACAATATTGAAGTCACGGTTGGCGTGAGGGACCAGGAC 300
Query 277 TTGGGTGCTCTTTCAGCTAACGAAGAAGCTGTTAAGGGCTGGTTTGCAACCAACATCGAG 336
|||| ||||||| |||||| ||||||||||| ||||| |||| |||||||||||||||||
Sbjct 301 TTGGCTGCTCTTGCAGCTAGCGAAGAAGCTGCTAAGGACTGGGTTGCAACCAACATCGAG 360
Query 337 CCTTACTTAGCCGATGTCAACATTGCGTTCATTACTGTTGGTAATGAAGTCATCCCCGGA 396
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 CCTTACTTAGCCGACGTCAACATTTCGTTCATTACTGTTGGTAATGAAGTCATCCCCGGA 420
Query 397 CCAATCGGTCCTCAAGTGCTTCCGGTCATGCAGTCTCTTACCATCCTCGTCAAGTCGATG 456
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 421 CCAATCGGTCCTCAAGTGCTTCCGGTCATGCAGTCTCTCACCAACCTCGTCAAGTCGAGG 480
Query 457 AACCTTCCCATCTCGATAAGCACCGTGGTGGCTATGTCGAATCTTGAGCAATCATACCCA 516
|| ||||| ||| || |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 481 AATCTTCCGATCGCGGTAAGCACCGTGGTGGCTATGTCAAATCTTAAGCAATCATACCCA 540
Query 517 CCTTCTGCTGGAGAGTTCACGTCTCAAGCGCGAGAACAACTTGTCCCCGTGCTGAAACTA 576
||||| |||||| |||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 541 CCTTCCGCTGGAAAGTTCACGTCCCAAGCGTGAGAACAACTTGTCCCCGTGCTTAAACTA 600
Query 577 TTGTCTCAAACAAGTACGCCTATTCTCGTCAATATTTACCCTTACTTTCCTTACGCATCC 636
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 601 TTGTCTCAAACAAGTACGCCTATTCTCGTCAATATTTACCCTTACTTCCCTTACGCGTCT 660
Query 637 GACCCAACGAACATCCCTCTAGACTATGCTACCTTCAACACTAAGGCCACCGTCGTCCAA 696
|||||||||||||||||||| ||||||||||||||||||||| ||| | ||| ||||||
Sbjct 661 GACCCAACGAACATCCCTCTCGACTATGCTACCTTCAACACTGAGGTCGTCGTGGTCCAA 720
Query 697 GATGGACCATTGGGCTATTCAAACATGTTTGATGCAATCTTTGACGCATTCGTGTGGGCA 756
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 GATGGACCATTGGGCTATTCAAACATGTTTGATGCAATCTTTGACGCATTTGTGTGGGCC 780
Query 757 ATGGAGAAGGAAGGCGTGAAAGATTTACCCATGGTGGTGTCCGAGACCGGATGGCCATCT 816
||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 781 ATGGAGAAGGAAGGCGTGAAAGATTTACCTTTGGTAGTGTCCGAGACGGGATGGCCATCT 840
Query 817 GCCGGAAATGGGAACTTAACCACACCGGATATCGCGGGTACTTACAACAGAAATTTCGTG 876
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||
Sbjct 841 GCCGGAAATGGGAACTTAACCACACCGGATATCGCGGGTACCTACCATAGAAATTTTGTG 900
Query 877 AAACATATAGTAAGCGGGAAGGGAACGCCTAAGCGACCCAACAATGGAATGGATGGGTTT 936
|| ||| || ||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGCATGTACTAAGCGGAAAAGGAACGCCTAAGCGACCCAACAATGGAATGGATGGGTTT 960
Query 937 TTATTTGCAACGTTCAACGAAAATCAAAAGCCGGCCGGGACTGA 980
|||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 961 CTATTCGCAACGTTCAACGAAAATCAAAAGCCGGCAGGGACTGA 1004
> Ahg941587 jgi|Araly1|941587|scaffold_602131.1
Length=1080
Score = 1168 bits (632), Expect = 0.0
Identities = 869/985 (88%), Gaps = 10/985 (1%)
Strand=Plus/Plus
Query 1 ATGGTCTATTCCTCTAAGAAGCTGTTCTTGTTCTTCCTCTCGTGCATTATGCTGACTT-T 59
||| ||||||| |||||||||| |||||||||||| ||| ||||||| |||||| || |
Sbjct 21 ATGTTCTATTCGACTAAGAAGCTATTCTTGTTCTTCTTCTTGTGCATTGTGCTGA-TTGT 79
Query 60 CAACTATAAC-ACTAGTGGCTTCGTAGCCGCAGCAAATAGCATAGGCTTGAACTACGGCC 118
|||||| ||| || | ||| |||||| |||||| ||||||||| ||||||||||| || |
Sbjct 80 CAACTACAACAAC-AATGGTTTCGTAACCGCAGTAAATAGCATTGGCTTGAACTATGGTC 138
Query 119 TCCTCGGAGATAACTTCCCAACTCCATCCAATGTTCTCAACCTTTACAAGTCCATAGGCA 178
|||||||||||||| |||| |||| ||||||||| | ||||||||||||||||||| ||
Sbjct 139 TCCTCGGAGATAACCTCCCGTCTCCGTCCAATGTTATAAACCTTTACAAGTCCATAGACA 198
Query 179 TTACAAAAATCCGAATCTTCGACCCAAAAACAGAGGTTCTTAACGCCTTACGCGGCCACC 238
|||| |||||||||||||||||||| || || || ||||||||||| |||||||||||||
Sbjct 199 TTACTAAAATCCGAATCTTCGACCCGAACACTGAAGTTCTTAACGCTTTACGCGGCCACC 258
Query 239 GTAATATTGAAGTCACTGTTGGCGTGAGGGACCAGGACTTGGGTGCTCTTTCAGCTAACG 298
|| |||||| ||||||||| ||||| |||||||||||||||| ||||||| |||||| ||
Sbjct 259 GTGATATTGCAGTCACTGTAGGCGTTAGGGACCAGGACTTGGCTGCTCTTGCAGCTAGCG 318
Query 299 AAGAAGCTGTTAAGGGCTGGTTTGCAACCAACATCGAGCCTTACTTAGCCGATGTCAACA 358
||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 319 AAGAAGCTGTTAAGGGCTGGTTTGCGACCAACATCGAGCCTTACTTACCCGACGTCAACA 378
Query 359 TTGCGTTCATTACTGTTGGTAATGAAGTCATCCCCGGACCAATCGGTCCTCAAGTGCTTC 418
| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 379 TCGCGTTCATTACTGTTGGTAATGAAGTCATCCCTGGACCAATTGGTTCTCAAGTGCTTC 438
Query 419 CGGTCATGCAGTCTCTTACCATCCTCGTCAAGTCGATGAACCTTCCCATCTCGATAAGCA 478
| |||||||||||||| |||| ||| |||| ||| | ||| ||||| |||||||||||||
Sbjct 439 CCGTCATGCAGTCTCTCACCAACCTGGTCAGGTCAAGGAATCTTCCAATCTCGATAAGCA 498
Query 479 CCGTGGTGGCTATGTCGAATCTTGAGCAATCATACCCACCTTCTGCTGGAGA-GTTCACG 537
| ||||||||||||| ||| || |||||||| ||||||||||| || ||| | |||||||
Sbjct 499 CTGTGGTGGCTATGTGGAACCTCGAGCAATCGTACCCACCTTCCGCAGGA-ATGTTCACG 557
Query 538 TCTCAAGCGCGAGAACAACTTGTCCCCGTGCTGAAACTATTGTCTCAAACAAGTACGCCT 597
||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 558 TCTCAAGCGCGTGAACAACTTGTTCCCGTGCTGAAACTATTGTCTCAAACAAATACGCCC 617
Query 598 ATTCTCGTCAATATTTACCCTTACTTTCCTTACGCATCCGACCCAACGAACATCCCTCTA 657
|||||||| ||||||||||||||||| ||||| | ||||||||| ||| |||||||||
Sbjct 618 ATTCTCGTAAATATTTACCCTTACTTCCCTTATGTGTCCGACCCAGCGAGCATCCCTCTC 677
Query 658 GACTATGCTACCTTCAACACTAAGGCCACCGTCGTCCAAGATGGACCATTGGGCTATTCA 717
|||||||| |||||||| ||| |||||| ||| || |||||||||||| |||||||||||
Sbjct 678 GACTATGCCACCTTCAATACTGAGGCCATCGTGGTACAAGATGGACCACTGGGCTATTCA 737
Query 718 AACATGTTTGATGCAATCTTTGACGCATTCGTGTGGGCAATGGAGAAGGAAGGCGTGAAA 777
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 738 AACATGTTTGATTCAATATTTGACGCTTTCGTGTGGGCAATGGAGAAGGAAGGCGTTAAA 797
Query 778 GATTTACCCATGGTGGTGTCCGAGACCGGATGGCCATCTGCCGGAAATGGGAACTTAACC 837
|||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| |||
Sbjct 798 GATTTACCAATGGTGGTGTCCGAGACCGGATGGCCATCTGCTGGGAATGGAAACTTTACC 857
Query 838 ACACCGGATATCGCGGGTACTTACAACAGAAATTTCGTGAAACATATAGTAAGCGGGAA- 896
|| ||||||||||| ||||| |||||||||||||| |||||||||||| |||||| ||
Sbjct 858 ACGCCGGATATCGCAGGTACCTACAACAGAAATTTTGTGAAACATATAACAAGCGGAAAA 917
Query 897 GGGAACGCCTAAGC-GACCCAACAATGGAATGGATGGGTTTTTATTTGCAACGTTCAACG 955
|||| |||| ||| | |||||||| || || || | |||||| |||||||| || || |
Sbjct 918 GGGA-CGCCCAAGAAG-CCCAACAAGGGCATCGACGTGTTTTTGTTTGCAACATTTAATG 975
Query 956 AAAATCAAAAGCCGGCCGGGACTGA 980
||||||| |||||||| ||||||||
Sbjct 976 AAAATCAGAAGCCGGCAGGGACTGA 1000
> Ahg488942 jgi|Araly1|488942|fgenesh2_kg.6__2076__AT5G20330.1
Length=1104
Score = 1062 bits (575), Expect = 0.0
Identities = 854/989 (86%), Gaps = 18/989 (2%)
Strand=Plus/Plus
Query 1 ATGGTCTA-TTCCTCTAAGAAGCTGTTCTTGTTCTTCCTCTCGTGCA-T-T-ATGCTGAC 56
||| |||| || | ||||||||||||||||| ||||||||||||| | | ||| || |
Sbjct 62 ATGCTCTATTTAC-CTAAGAAGCTGTTCTTG---TTCCTCTCGTGCATTGTGATGTTGTC 117
Query 57 TTTCAACTATAAC-ACTAGTGGCTTCGTAGCCGCAGCAAATAGCATAGGCTTGAACTACG 115
||||||| ||| || |||| || |||| |||||||||||||||| |||||||||||||
Sbjct 118 AGTCAACTACAACAAC-AGTGCCTCCGTAACCGCAGCAAATAGCATCGGCTTGAACTACG 176
Query 116 GCCTCCTCGGAGATAACTTCCCAACTCCATCCAATGTTCTCAACCTTTACAAGTCCATAG 175
||||||||||||| ||| |||| |||| ||||||||| |||||||||||||||||||||
Sbjct 177 GCCTCCTCGGAGACAACCTCCCCTCTCCGTCCAATGTTATCAACCTTTACAAGTCCATAG 236
Query 176 GCATTACAAAAATCCGAATCTTCGACCCAAAAACAGAGGTTCTTAACGCCTTACGCGGCC 235
||||||| |||||||||||||||||||| || || |||||||| || |||||||| || |
Sbjct 237 GCATTACTAAAATCCGAATCTTCGACCCGAACACTGAGGTTCTCAATGCCTTACGTGGTC 296
Query 236 ACCGTAATATTGAAGTCACTGTTGGCGTGAGGGACCAGGACTTGGGTGCTCTTTCAGCTA 295
|||| |||| ||||||||||||||||| | ||||| ||||||| ||||||| |||| |
Sbjct 297 ACCGCGATATAGAAGTCACTGTTGGCGTTAAAGACCAAGACTTGGCTGCTCTTGCAGC-A 355
Query 296 A-CGAAGAAGCTGTTAAGGGCTGGTTTGCAACCAACATCGAGCCTTACTTAGCCGATGTC 354
| |||||| |||||||||||||||||||| ||||||||||| |||||||||| || |||
Sbjct 356 AGCGAAGAGGCTGTTAAGGGCTGGTTTGCGGCCAACATCGAGTCTTACTTAGCTGACGTC 415
Query 355 AACATTGCGTTCATTACTGTTGGTAATGAAGTCATCCCCGGACCAATCGGTCCTCAAGTG 414
||||| || || ||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 416 AACATCGCATTTATTACCATTGGTAACGAAGTCATCCCAGGACCAATCGGTCCTCAAGTG 475
Query 415 CTTCCGGTCATGCAGTCTCTTACCATCCTCGTCAAGTCGATGAAC-CTTCCCATCTCGAT 473
|||||||||||||||||||| |||| |||||||||||||| ||| ||||| |||| |||
Sbjct 476 CTTCCGGTCATGCAGTCTCTCACCAACCTCGTCAAGTCGA-GAAATCTTCCTATCTTGAT 534
Query 474 AAGCACCGTGGTGGCTATGTCGAATCTTGAGCAATCATACCCACCTTCTGCTGGAGA-GT 532
|||||||||||| ||||||||||| || ||||| || ||||||||||| || ||| | ||
Sbjct 535 AAGCACCGTGGTAGCTATGTCGAACCTCGAGCAGTCGTACCCACCTTCCGCGGGA-ATGT 593
Query 533 TCACGTCTCAAGCGCGAGAACAACTTGTCCCCGTGCTGAAACTATTGTCTCAAACAAGTA 592
|||| || || || || ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 594 TCACCTCCCAGGCTCGGGAACAACTTGTCCCCGTACTGAAACTATTGTCACAAACAAGTA 653
Query 593 CGCCTATTCTCGTCAATATTTACCCTTACTTTCCTTACGCATCCGACCCAACGAACATCC 652
| || || || ||||| || ||||||||||| ||||| || ||||||||| |||||||
Sbjct 654 CACCGATCCTTGTCAACATATACCCTTACTTCCCTTATGCGTCCGACCCAGTTAACATCC 713
Query 653 CTCT-AGACTATGCTACCTTCAACACTAAGGCCACCGTCGTCCAAGATGGACCATTGGGC 711
|||| | ||||||| |||||||||||| |||||| | ||||||||||||||||||||
Sbjct 714 CTCTCA-ACTATGCCACCTTCAACACTGAGGCCATATTGGTCCAAGATGGACCATTGGGT 772
Query 712 TATTCAAACATGTTTGATGCAATCTTTGACGCATTCGTGTGGGCAATGGAGAAGGAAGGC 771
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 773 TATTCAAACATGTTTGAAGCAATCTTTGATGCGTTCGTGTGGGCAATGGAGAAGGAAGGC 832
Query 772 GTGAAAGATTTACCCATGGTGGTGTCCGAGACCGGATGGCCATCTGCCGGAAATGGGAAC 831
|| ||||||||||| ||||||||||||||||| ||||||||||| || || |||||||||
Sbjct 833 GTTAAAGATTTACCAATGGTGGTGTCCGAGACAGGATGGCCATCCGCGGGGAATGGGAAC 892
Query 832 TTAACCACACCGGATATCGCGGGTACTTACAACAGAAATTTCGTGAAACATATAGTAAGC 891
|| ||||| |||||||||||| ||| |||||||||||||| |||| ||||||| ||||
Sbjct 893 TTTACCACGCCGGATATCGCGTCTACCTACAACAGAAATTTTGTGAGGCATATAGCAAGC 952
Query 892 GGGAAGGGAACGCCTAAGCGACCCAACAATGGAATGGATGGGTTTTTATTTGCAACGTTC 951
|| || ||||||||||| | || ||||| || || ||||||||| | || |||||||||
Sbjct 953 GGAAAAGGAACGCCTAAAAGGCCTAACAAGGGCATCGATGGGTTTCTGTTCGCAACGTTC 1012
Query 952 AACGAAAATCAAAAGCCGGCCGGGACTGA 980
|| |||||||||||||||| |||||||||
Sbjct 1013 AATGAAAATCAAAAGCCGGTCGGGACTGA 1041
> Ahg941608 jgi|Araly1|941608|scaffold_602152.1
Length=1107
Score = 370 bits (200), Expect = 1e-101
Identities = 430/540 (80%), Gaps = 20/540 (4%)
Strand=Plus/Plus
Query 439 ATCCTCG-TCAAGTCGATGAACCTTCCC-AT-CTCGATAAGCACCGTGGTGGCTATGTCG 495
||||| | ||||||||| ||| | |||| || || ||| |||||| ||||||||| |
Sbjct 488 ATCCT-GATCAAGTCGAGGAATC-TCCCGATCCT-GATCAGCACCACCGTGGCTATGACC 544
Query 496 AATCTTGAG-CAATCATACCCACCTTCTGCTGGAGAGTTCACGTCTCAAGCGCGAGAACA 554
||||||| | ||||| || |||||||| || ||||| || ||| ||||||| || |||||
Sbjct 545 AATCTTG-GCCAATCGTATCCACCTTCGGCCGGAGATTTTACGCCTCAAGCACGTGAACA 603
Query 555 ACTTGTC-CCCGTGCTGAAACTATTGTCTCAAACAAGTACGCCTATTCTCGTCAATATTT 613
|| | | || |||||||| | || |||||||||||||| |||||||||||||| || |
Sbjct 604 AC-TAACTCCAGTGCTGAAGTTTTTATCTCAAACAAGTACACCTATTCTCGTCAACATCT 662
Query 614 ACCCTTACTTTC-CTTACGCAT-CCGA-CCCAACGAACATCCCTCTAGACTATGCTACCT 670
|||||||| ||| |||| || | | || | | ||||| | ||| || || || ||||
Sbjct 663 ACCCTTAC-TTCGCTTATGC-TGCTGATTCTGTC-AACATTCATCTTGATTACGCAACCT 719
Query 671 TCAACACTAAGGCCACCGTCGTCCAAGATGGACCATTGGGCTATTCAAACATGTTTGATG 730
||||||| | || ||| || ||||| || ||| | | |||||||||||||| ||||
Sbjct 720 TCAACACCGACGCGGTCGTGGTTCAAGACGGGCCACTAAGTTATTCAAACATGTTCGATG 779
Query 731 CAATCTTTGACGCATTCGTGTGGGCAATGGAGAAGGAAGGCGTGAAAGATTTACCCATGG 790
||| ||||| || ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 780 TAATATTTGATGCGTTCGTATGGGCAATGGAGAAAGAAGGCGTGAAAGATTTACCCATGG 839
Query 791 TGGTGTCCGAGACCGGATGGCCATCTGCCGGAAATGGGAACTTAACCACACCGGATATCG 850
|||| | |||||||||||||| |||||||| || ||||||||||| || || |||||||
Sbjct 840 TGGTAACAGAGACCGGATGGCCGTCTGCCGGTAACGGGAACTTAACAACGCCAGATATCG 899
Query 851 CGGGTACT-TACAACAGAAATTTCGTGAAACATATAGTAAGCGGGAA-GGGAACGCCTAA 908
|| || | |||||| ||||||| || |||||| | | |||||| || |||| | || ||
Sbjct 900 CGTCTA-TATACAACGGAAATTTTGTCAAACATGTGGAAAGCGGTAAAGGGA-CACCGAA 957
Query 909 GCGACCCAACAATGGAATGGATGGGTTTTTATTTGCAACGTTCAACGAAAATCAAAAGCC 968
| | || |||||| | || |||| ||||||||||| |||||||| ||||||||||||||
Sbjct 958 GAGGCCAAACAATAGCATTCATGGATTTTTATTTGCTACGTTCAATGAAAATCAAAAGCC 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5