BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33230.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473496 jgi|Araly1|473496|fgenesh2_kg.1__3450__AT1G33230.1 2327 0.0
Ahg942853 jgi|Araly1|942853|scaffold_603397.1 1020 0.0
Ahg895176 jgi|Araly1|895176|Al_scaffold_0006_3172 510 1e-143
> Ahg473496 jgi|Araly1|473496|fgenesh2_kg.1__3450__AT1G33230.1
Length=1527
Score = 2327 bits (1260), Expect = 0.0
Identities = 1446/1533 (94%), Gaps = 23/1533 (2%)
Strand=Plus/Plus
Query 3 TTAGATTGCGATGTGGTAGGGACTCGGTGAGGGTTTTGGAAGAGCATGACAAAAGATCCG 62
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1 TTAGATTGCGATGTGGTAGGGACTCGGTGAGGGTTTTGG-A-AGCATGACAAAAGATCCA 58
Query 63 TGCCATT--GAT--CTCTATTAACACACCAAA-AGcttcttcttcttcttcctctcgtct 117
||||||| ||| || |||| |||||||||| | |||||||||||||||||||||||||
Sbjct 59 TGCCATTGAGATCCCTTTATTTACACACCAAATA-CTTCTTCTTCTTCTTCCTCTCGTCT 117
Query 118 ctaaaaatccttcctttctttctgggttttctcgaatcttcATCTCTCATTCAAACCCAC 177
||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct 118 CTAAAAATCCTTCCTTTTTTTCTGGGTTTTCTCCAATCTTCATCTCTCATTCGAACCCAC 177
Query 178 AAGTCCG-----ATCTCGCGATCCAAACACCATGGAAGAGGTTGAAGAAGAAGTGAGACG 232
||||||| ||||| ||||||||| |||||||||||||||||||||||||| | |||
Sbjct 178 AAGTCCGATCTCATCTCCCGATCCAAAAACCATGGAAGAGGTTGAAGAAGAAGTAAAACG 237
Query 233 AATCGTCGAACAAGTTAAAGAGCTTCATGACTCTTCCACATCCTTCGTCTCTTCTTCTTC 292
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 238 AATCGTCGAACAAGTTAAAGAGCTTCACGACTCTTCCACATCATTCGTTTCTTCTTCTTC 297
Query 293 TCAAGAAGAGCTTTCTCTCCGTAACAGAGCCTCCGTCGTTGACTCATCAATCCGCCGTCT 352
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 298 TCAAGAAGAGCTCTCTCTCCGTAACAGAGCCTCCGTCGTTGACTCATCAATCCGTCGTCT 357
Query 353 TCATTCTACTCTTGCCTCTGACAAACATCTCGATCCCAAGCTTTTCGAAAAGCTAGAAGA 412
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 358 TCATTCTACTCTTGCCTCCGACAAACATCTCGATCCCAAGCTTTTCGAAAAGCTTGAAGA 417
Query 413 GGATCTGCAACGAGCTAGATGCATGCTTGCAGATGGAGACACTTCATCGTTTCTTCCATC 472
|||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| ||
Sbjct 418 GGATCTACAACGAGCTAAATGCATGCTTGCAGATGGTGACACTTCATCGTTTCTTCCCTC 477
Query 473 TAAACCTCAAGGACGTTTTGTGAGAATGTTTTTGGGACCTGTGAATGTTAGAGCTTCACG 532
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 478 TAAACCTCAAGGACGTTTTGTGAGAATGTTTTTAGGACCTGTGAATGTTCGAGCTTCACG 537
Query 533 AAAAGATATACAGCTTAAAGTTAAAGAAGAATATAATAGCTACAGAGATAGGACAGCTCT 592
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 538 GAAAGATATACAGCTTAAAGTTAAAGAAGAATACAATAGCTACAGAGATAGAACAGCTCT 597
Query 593 TCTTTTTCTTGTTTTCCCTGCAATACTTTTGACACTAAGATCTTATGTTTGGGATGGATG 652
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 TCTTTTTCTTGTTTTCCCTGCAATACTTTTGACACTAAGATCTTATGTGTGGGATGGATG 657
Query 653 TTTGCCTGCATTCCCTGTTCAGCTCTACCAGGCTTGGCTACTGTTTCTTTATGCTGGTTT 712
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 658 TTTGCCTGCATTCCCTGTTCAGCTCTACCAGGCTTGGCTTCTGTTCCTTTATGCTGGTTT 717
Query 713 GGTTATGCGAGAGAACATTTTAAGAGCTAATGGGAGTGATATCCGTTCATGGTGGCTTTA 772
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 718 GGTTATGCGAGAGAACATTTTGAGAGCCAATGGGAGTGATATCCGTTCATGGTGGATTTA 777
Query 773 TCATCATTATTTTGCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCA 832
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 TCACCATTATTTTGCCATGGCTATGTCCCTTGTTAGTCTCACTTGGGAAATCAAAGGTCA 837
Query 833 ACCAAACTGCGTTCAGAAGCAGAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCA 892
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACCAAACTGTGTTCAGAAGCAGAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCA 897
Query 893 AGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGC 952
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 AGGTGTTGCGATGCTTCTACAAAATAGATATCAGCGCCAAAGATTATACACTCGTATTGC 957
Query 953 ACTTGGAAAGGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCA 1012
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACTAGGAAAGGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCA 1017
Query 1013 ACTATTGCTATTATTTCCTATTTTGTTCACTTTACAGGGCTTTGAAGCATACGTGGGATT 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 ACTATTGCTATTATTTCCTATTTTGTTCACTTTACAGGGCTTTGAAGCATACGTGGGACT 1077
Query 1073 CCAGTTGCTTAGGACAGTGTTGATGGGGGTAGTCGCTGAATGGCAGGTATTGGTTTGTGG 1132
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1078 GCAGTTGCTTAGGACAGTGTTGACGGGTGTAGTCGCTGAATGGCAGGTATTGGTTTGTGG 1137
Query 1133 CATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATAAACACAGTAGAGACACTAATGGT 1192
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1138 TATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATAAACACAGTAGAGACATTGATGGT 1197
Query 1193 GAAGTCGAGATTCAAGGCGAAGATGAAGAGAAGTAAAAGCAGAGCAGAACTTTGATTAAA 1252
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1198 GAAGTCGAGATTCAAGGCGAAGATGAAGAGAAGTAAAAGCAGAGCAGAACTT-GATTAAA 1256
Query 1253 CTTCCTAACTTATATGACTACACCTTTATAGTTTCCAACTGTGGATCTTTCTCCCCATTA 1312
||||||||||||||| |||| | ||| |||||||| |||||||||||||||||| |||||
Sbjct 1257 CTTCCTAACTTATATAACTATAGCTTCATAGTTTCAAACTGTGGATCTTTCTCCACATTA 1316
Query 1313 TTTGCTTCAGTCGATAAATTTTGTTT-CTTGGGGCAAAAGTAACCTAAG--TCTGaaaaa 1369
||||||| | | |||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 1317 TTTGCTTTACTTGATAAATTTTGTTTTCTTGGGGCAAAAGTGACCTAAAAATCTGAAAAA 1376
Query 1370 -aaaaaaaaCAGGGAGTGCCCTTTGTTTGTGTAAATGGAAGTTGGGATTTGATAGTT-GA 1427
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1377 GAAAAAAAACAGGGAGTGCCCTTTCTTTGTGTAAATGGAAGTTGGGATTTGATAATTTGA 1436
Query 1428 TTGATTAAACTGTGTTTTGTAAACTTTTCAACTAACACTTGTTCGGTTTCCAATGATCAG 1487
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1437 TTGATTAAACTGTGTTTTGTAAACTTTTCAACTAACATTTGTTGGGTTTCCAATGATC-G 1495
Query 1488 ATTT-TCATAAA-ATGGTGTTGAAATTAGATTT 1518
| || ||| ||| || |||||||||||||||||
Sbjct 1496 AATTCTCA-AAAGATAGTGTTGAAATTAGATTT 1527
> Ahg942853 jgi|Araly1|942853|scaffold_603397.1
Length=1084
Score = 1020 bits (552), Expect = 0.0
Identities = 900/1068 (84%), Gaps = 24/1068 (2%)
Strand=Plus/Plus
Query 201 ACCATGGA-AGAGGTTGAAGAAGAAGTGAGACGAATCGTCGAACAAGTTAAAGAGCTTCA 259
||||| || || || ||||||||||| | ||||||| | || | ||||| || |||||
Sbjct 14 ACCATCGATGGAAGTCGAAGAAGAAGTTAAACGAATCATAGATGAGGTTAAGGACCTTCA 73
Query 260 TGACTCTTCCACATCCTTCGTCTCTTCTTCTTCTCAAGAAGAGCTTTCTCTCCG--TAAC 317
|||||| || | || ||| |||| || ||||||||| ||||||| |||||||| |||
Sbjct 74 TGACTCCGCCGCTTCATTCATCTCATCATCTTCTCAACAAGAGCTCTCTCTCCGTCTAA- 132
Query 318 AGAGCCTCCGT-CGTTGACTCATCAATCCGCCGTCTTCATTCTACTCTTGCCTCTGACAA 376
| ||||||| | |||||| || || ||||| ||||| || |||||||| | ||| ||||
Sbjct 133 A-AGCCTCC-TCCGTTGATTCCTCTATCCGTCGTCTCCACTCTACTCTCGTCTCCAACAA 190
Query 377 ACATCTCGATCCCAAGCTTTTCGAAAAGCTAGAAGAGGATCTGCAACGAGCTAGATGCAT 436
| |||||||||| || || |||| ||||| |||||||||||||| || |||||||||||
Sbjct 191 AAATCTCGATCCTAAACTCGTCGAGAAGCTTGAAGAGGATCTGCATCGTGCTAGATGCAT 250
Query 437 GCTTGCAGATGGAGACACTTCATCGTTTCTTCCATCTAAACCTCAAGGACGTTTTGTGAG 496
||||| |||||||| || || || ||||| ||||| |||||||||||||||||||||||
Sbjct 251 GCTTGTTGATGGAGAAACATCTTCATTTCTACCATCAAAACCTCAAGGACGTTTTGTGAG 310
Query 497 AATGTTTTTG-GGACCTGTGAATGTTAGAGCTTCACGAAAAGATATACAGCTTAAAGTTA 555
|||| ||||| ||||||||||||||| |||||| || |||||| | |||||||||||||
Sbjct 311 AATG-TTTTGTGGACCTGTGAATGTTCGAGCTTTGCGTAAAGATGTTCAGCTTAAAGTTA 369
Query 556 AAGAAGAATATAATAGCTACAGAGATAGGACAGCTCTTCTTTTTCTTGTTTTCCCTGCAA 615
|||||||||| ||| | |||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 370 AAGAAGAATACAATCGTTACAGAGATAAGACTGCTCTTCTTTTTCTTTTTTTCCCTGCAA 429
Query 616 TACTTTTGA-CACTAAGATCTTATGT-TTGGGATGGATGTTTGCCTGCATTCCCTGTTCA 673
|||||| | | || ||||||||| | ||||| ||||||||||||||| || ||||||||
Sbjct 430 CACTTTTAATC-CTTAGATCTTAT-TATTGGGGTGGATGTTTGCCTGCGTTTCCTGTTCA 487
Query 674 GCTCTACCAGGCTTGGCTACTGTTTCTTTATGCTGGTTTGGTTATGCGAGAGAACATTTT 733
|||||| |||||||||| ||||||| |||||||| |||| |||||| |||||||| ||
Sbjct 488 GCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAGAACATATT 547
Query 734 AAGAGCTAATGGGAGTGATATCCGTTCATGGTGGCTTTATCATCATTATTTTGCAATGGC 793
||||||||| ||||| ||||| ||| |||||||||| ||||||||||||| ||| |||||
Sbjct 548 AAGAGCTAACGGGAGCGATATTCGTCCATGGTGGCTATATCATCATTATTGTGCCATGGC 607
Query 794 TATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCA 853
|||| |||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 608 TATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACA 667
Query 854 GAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCA 913
|| |||||| | ||||||||| |||||||||||||||||||| || || |||||||| ||
Sbjct 668 GAGAGGAGTCCATCTTTTCCTGCAATGGGCTATGATGCAAGGCGTTGCCATGCTTCTACA 727
Query 914 AAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGGCTAAAAGGAT 973
||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 728 AAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCTAAGAGAAT 787
Query 974 GGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCAACTATTGCTATTATTTCCTAT 1033
||| ||||||||||||||||||||||| || ||||| ||| ||| ||| |||| ||| ||
Sbjct 788 GGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTGTTATGTCCCAT 847
Query 1034 TTTGTTCACTTTACAGG-GCTTTGAAGCATACGTGGGATTCCAGTTGCTTAGGACAGT-G 1091
|||||| |||||||| | |||||||||||||| ||| | | |||||| || | | |
Sbjct 848 ACTGTTCATTTTACAGGTG-TTTGAAGCATACGTTGGACTGCTGTTGCTAAGAAAAACAG 906
Query 1092 TTGA-TGGGGGTAGTCGCTGAATGGCAGGT-ATTGGTTTGTGGCATTCTTCTGGTTGTGA 1149
| | ||| | | || |||||||||||| || ||||||||||||||||||||| ||||
Sbjct 907 TA-ACTGGAGTT-GTTAATGAATGGCAGGTGAT-GGTTTGTGGCATTCTTCTGGTAGTGA 963
Query 1150 TGGCCATTGGAAACTTCATAAACACAGTAGAGACACTAATGGTGAAGTCGAGA-TTCAAG 1208
|||| |||| |||||||||||||||||||||||||| |||| ||||| ||| || |||
Sbjct 964 TGGCTGTTGGGAACTTCATAAACACAGTAGAGACACTGATGGCAAAGTCAAGAGTT-AAG 1022
Query 1209 GCGAAGATGAAGAGAAGTAAAAGCAGAGCAGAACTTTGATTAAACTTC 1256
|| ||||||| ||| ||||||||||||||||| ||| |||| |||||
Sbjct 1023 GCAAAGATGATGAGGAGTAAAAGCAGAGCAGAGCTTA-ATTAGACTTC 1069
> Ahg895176 jgi|Araly1|895176|Al_scaffold_0006_3172
Length=684
Score = 510 bits (276), Expect = 1e-143
Identities = 434/510 (85%), Gaps = 11/510 (2%)
Strand=Plus/Plus
Query 666 CCTGTTCAGCTCTACCAGGCTTGGCTACTGTTTCTTTATGCTGGTTTGGTTATGCGAGAG 725
|||||||||||||| |||||||||| ||||||| |||||||| |||| |||||| |||
Sbjct 181 CCTGTTCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAG 240
Query 726 AACATTTTAAGAGCTAATGGGAGTGATATCCGTTCATGGTGGCTTTATCATCATTATTTT 785
||||| |||||||||||||||| ||||| ||| |||||||||| |||||||| |||| |
Sbjct 241 AACATACTAAGAGCTAATGGGAGCGATATTCGTCCATGGTGGCTATATCATCACTATTGT 300
Query 786 GCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTT 845
|| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 301 GCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTC 360
Query 846 CAGAAGCAGAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATG 905
||||| |||| |||||| | ||||||||| |||||||||||||||||||||||||| |||
Sbjct 361 CAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATG 420
Query 906 CTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGGCT 965
||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CTTCTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCT 480
Query 966 AAAAGGA-TGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCAACTATTGCTATT 1024
|| || | |||| ||||||||||||||||||||||| || ||||| ||| ||| ||| |
Sbjct 481 AAGAG-ACTGGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTGCT 539
Query 1025 ATTTCCTATTTTGTTCACTTTACAGG-GCTTTGAAGCATACGTGGGATTCCAGTTGCTTA 1083
|| |||||| |||||| |||||||| | |||||||||||||| ||| | | |||||| |
Sbjct 540 ATGTCCTATACTGTTCATTTTACAGGTG-TTTGAAGCATACGTTGGACTGCTGTTGCTAA 598
Query 1084 GGACAGT-GTTGA-TGGGGGTAGTCGCTGAATGGCAGGT-ATTGGTTTGTGGCATTCTTC 1140
| | | || | ||| | | || |||||||||||| || ||||||||| |||||||
Sbjct 599 GAAAAACAGTA-ACTGGAGTT-GTTAATGAATGGCAGGTGAT-GGTTTGTGGTATTCTTC 655
Query 1141 TGGTTGTGATGGCCATTGGAAACTTCATAA 1170
|||| |||||||| |||| | ||||||||
Sbjct 656 TGGTAGTGATGGCTGTTGGGA-CTTCATAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5