BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33240.1
Length=2624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473497 jgi|Araly1|473497|fgenesh2_kg.1__3451__AT1G33240.1 3703 0.0
Ahg927082 jgi|Araly1|927082|scaffold_202643.1 89.8 9e-17
> Ahg473497 jgi|Araly1|473497|fgenesh2_kg.1__3451__AT1G33240.1
Length=2568
Score = 3703 bits (2005), Expect = 0.0
Identities = 2374/2536 (94%), Gaps = 90/2536 (4%)
Strand=Plus/Plus
Query 127 TCATCAATGGTTTTATGAGATTTATATCAAAAAACATTGAG---GAGCTAGAGAGAAAGA 183
|||||||||||||||||||| | |||| |||||||||||| ||| | ||||| |||
Sbjct 84 TCATCAATGGTTTTATGAGA--T-TATC-AAAAACATTGAGCTAGAGAGAAAGAGAGAGA 139
Query 184 GAGAGTGTGTGTGTAGAAAAAGATTGAAACATCATCAAGATTGATGGAGCAAGGA---GG 240
||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 140 GAGTGTGTGTGTGTTGAAAAAGATTGAAA-ATCATCAAGATTGATGGAGCAAGGAGGTGG 198
Query 241 AGGTGGTGGTGGTAATGAAGTTGTGGAGGAAGCTTCACCTATTAGTTCAAGACCTCCTGC 300
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 199 AGGTGGTGGTGGTAATGAAGTGGTGGAAGAAGCTTCACCTATTAGTTCAAGACCTCCTGC 258
Query 301 TAACAACTTAGAAGAGCTTATGAGATTCTCAGCCGCCGCGGATGACGGTGGATTaggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 259 TAACAACTTAGAAGAGCTTATGAGATTCTCAGCCGCCGCGGATGACGGTGG---AGGA-- 313
Query 361 tggaggtggaggaggaggaggaggaAGTGCTTCTTCTTCATCGGGAAATCGATGGCCGAG 420
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 -GGA---GGAGGAGGAGGAGGAGGAAGTGCTTCTTCTTCATCGGGAAATCGATGGCCGAG 369
Query 421 AGAAGAAACTTTAGCTCTTCTTCGGATCCGATCCGATATGGATTCTACTTTTCGTGATGC 480
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 370 AGAAGAAACACTAGCTCTTCTTCGGATCCGATCCGATATGGATTCGACTTTTCGTGATGC 429
Query 481 TACTCTCAAAGCTCCTCTTTGGGAACATGTTTCCAGGAAGCTATTGGAGTTAGGTTACAA 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 430 TACTCTCAAAGCTCCTCTTTGGGAACATGTTTCCAGAAAGCTATTGGAGTTAGGTTACAA 489
Query 541 ACGAAGTTCAAAGAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAACGTAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 490 ACGAAGTTCAAAGAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAACGCAC 549
Query 601 TAAAGAAACTCGCGGTGGTCGTCATGATGGTAAAGCTTACAAGTTCTTCTCTCAGCTTGA 660
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 550 TAAAGAAACTCGTGGTGGTCGTCATGATGGTAAAGCTTATAAGTTCTTCTCTCAGCTTGA 609
Query 661 AGCTCTCAACACTACTCCTCCTTCATCTTCCCTCGACGTTACTCCTCTCTCCGTCGCTAA 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 610 AGCTCTCAACACTACTCCTCCTTCATCTTCCCTCGACGTCACTCCTCTCTCCGTCGCCAA 669
Query 721 TCCCATTCTCATGCcttcttcttcttcttctCCATTTCCCGTATTCTCTCAACCGCAACC 780
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 670 TCCCATTCTCATGCCTACTTCTTCTTCTTCTCCATTTCCCGTCTTCCCTCAACCGCAACC 729
Query 781 GCAAACGCAAACGCAACCGCCTCAAACGCATAATGTCTCTTTTACTCCTACTCCACCACC 840
|| || | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 730 GC-AA--C---CGCAACCGCTTCAAACGCATAATGTCTCTTTTACTCCTACTCCACCACC 783
Query 841 TCTTCCACTTCCTTCAATGGGTCCGATATTTACCGGTGTTACTTTCTCGTCTCATAGCTC 900
|| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 784 TCCTCCACTTCCTTCAATGGGTCCGACCTTTCCCGGTGTTACCTTCTCGTCTCATAGCTC 843
Query 901 ATCGACGGCTTCAGGAATGGGGTCTGATGATGATGACGACGATATGGACGTTGATCAGGC 960
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 844 ATCGACGGCTTCAGGAATGGGGTCTGATGATGATGACGACGAGATGGACGTGGATCAAGC 903
Query 961 TAACATTGCGGGTTCTAGTAGCCGAAAACGCAAACGTGGAAACCGCGGTGGAGGCGGTAA 1020
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TAACATTGCGGGGTCTACTAGCCGAAAACGCAAACGTGGAAACCGCGGTGGAGGCGGTAA 963
Query 1021 AATGATGGAATTGTTTGAAGGTTTGGTGAGACAAGTAATGCAAAAGCAAGCGGCTATGCA 1080
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AATGATGGAATTATTTGAAGGTTTGGTGAGACAAGTAATGCAAAAGCAAGCGGCTATGCA 1023
Query 1081 AAGGAGTTTCTTGGAAGCTCTTGAGAAGAGAGAGCAAGAACGTCTTGATCGTGAAGAAGC 1140
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1024 ACGGAGTTTCTTGGAAGCTCTTGAGAAGAGAGAGCAAGAACGTCTTGATCGAGAAGAAGC 1083
Query 1141 TTGGAAACGTCAAGAAATGGCTCGGTTAGCTCGAGAACACGAGGTCATGTCTCAAGAACG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TTGGAAACGTCAAGAAATGGCTCGGTTAGCTCGAGAACACGAGGTCATGTCTCAAGAACG 1143
Query 1201 AGCCGCCTCTGCTTCTCGTGACGCCGCAATCATTTCATTGATTCAGAAAATTACTGGCCA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 AGCCGCCTCTGCTTCTCGTGACGCCGCAATCATTTCATTGATTCAGAAAATTACTGGCCA 1203
Query 1261 TACCATTCAGTTACCTCCTTCTTTGTCATC---------TCAACCGCCTCC---ACCGTA 1308
||||||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 1204 CACCATTCAGTTACCTCCTTCTTTATCATCACAACCGCCTCAACCGCCTCCTCCACCGTA 1263
Query 1309 TCAACCGCCACCCGCGGTCACTAAACGTGTGGCGGAACCACCATTATCAACAGCTCAATC 1368
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1264 TCAACCGCCACCCGCGGTTGCTAAACGTGTGGCAGAACCACCATTATCAACAGCTCAATC 1323
Query 1369 TCAATCACAACAACCAATAATGGCGATTCCACAACAACAAATTCTTCCTCCTCCTCCTCC 1428
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 TCAATTACAACAACCAATAATGGCGATTCCACAACAACAAATTCTTCCTCCTCCTCCTCC 1383
Query 1429 TTCTCATCCTCA-CG-C-TCATcaaccagaacagaaacaacaacaacaac--ca-c---a 1479
| ||| |||||| | | |||||||||||||||||||||||||||||||| || | |
Sbjct 1384 TCCTCCTCCTCATCTTCCTCATCAACCAGAACAGAAACAACAACAACAACAACAACCGCA 1443
Query 1480 acaa---GAGATGGTCATGAGCTCGGAACAATCATCATTACCATCATCATCAAGATGGCC 1536
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 ACAACAAGAGATGGTCATGAGCTCGGAACAATCATCATTACCATCATCATCAAGATGGCC 1503
Query 1537 AAAGGCAGAGATTCTAGCGCTTATAAACCTGAGAAGTGGAATGGAACCAAGGTACCAAGA 1596
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1504 AAAGGCGGAGATTCTAGCGCTTATAAACCTAAGAAGCGGAATGGAACCAAGGTACCAAGA 1563
Query 1597 TAATGTACCTAAAGGACTTCTATGGGAAGAGATCTCAACTTCAATGAAGAGAATGGGATA 1656
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1564 TAATGTCCCTAAAGGACTTCTATGGGAAGAGATCTCAACGTCAATGAAGAGAATGGGATA 1623
Query 1657 CAACAGAAACGCTAAGAGATGTAAAGAGAAATGGGAAAACATAAACAAATACTACAAGAA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 CAACAGAAACGCTAAGAGATGTAAAGAGAAATGGGAAAACATAAACAAATACTACAAGAA 1683
Query 1717 AGTTAAAGAAAGCAACAAGAAACGTCCTCAAGATGCTAAGACTTGTCCTTACTTTCACCG 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 AGTTAAAGAAAGCAACAAGAAACGTCCTCAAGATGCTAAGACTTGTCCTTACTTTCACCG 1743
Query 1777 CCTCGATCTTCTTTACCGCAACAAAGTACTCGGTAGTGGCGGTGGTTCTAGCACTTCTGG 1836
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1744 TCTTGATCTTCTTTACCGCAACAAAGTACTCGGTAGTGGTGGCGGTTCTAGCACTTCTGG 1803
Query 1837 TCTACCTCAAGACCAAAAACAGAGTCCGGTCACTGCGATGAAACCGCCACAAGAAGGACT 1896
|||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||||||
Sbjct 1804 TCTACCTCAAGACCAAAAGCAGAGTCCAGTCCCTGCGATGAAACTGCCACAAGAAGGACT 1863
Query 1897 TGTTAATGTTCAACAAACTCATGGGTCAGCTTCAACTGAGGAAGAAGAGCCTATAGAGGA 1956
|||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1864 TGTTAATGTTCAACAACCTCATGGGTCAGCTTCAAGTGAGGAAGAGGAGCCTATAGAGGA 1923
Query 1957 AAGTCCACAAGGAACAGAAAAGCCAGAAGACCTTGTGATGAGAGAGCTGATTcaacaaca 2016
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 AAGTCCACAAGGAACAGAAAAGCCAGAAGACCTTGTGATGAGAGAGCTGAT--------- 1974
Query 2017 acagcaactacaacaacaaGAATCAATGATAGGTGAGTATGAAAAGATTGAAGAGTCTCA 2076
||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 ---GCAAC-A-A-CAACAAGAATCAATGATAGGTGAGTATGAAAAGATTGAAGAGTCTCA 2028
Query 2077 CAATTATAATAACATGGAGGAAGAGGAAGATCAGGAAATGGATG-AGGAAGAACTAGACG 2135
|||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||
Sbjct 2029 CAATTATAATAACATGGAGGAAGAGGAAGA---GGAGATGGATGTAG-AAGAACTAGACG 2084
Query 2136 AGGATGAGAAGTCCGCGGCTTTCGAGATTGCGTTTCAAAGCCCTGCAAACAGAGGAGGCA 2195
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2085 AGGATGAGAAATCCGCGGCTTTCGAGATCGCGTTTCAAAGCCCTGCAAACAGAGGAGGCA 2144
Query 2196 ATGGCCATACGGAACCACCTTTCTTGACAATGGTTCAGTAAAATCAGAATCATTGTTTCA 2255
||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct 2145 ATGGCCACACGGAACCACCTTTCTTGACAATGGTTCAGTAAAAAC----TCATTGATTCA 2200
Query 2256 AGAAAATGTACTTATGTGTGCATAGTTTTCTaaacaaaacacccaaaaacacaaaacaca 2315
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2201 AGAAAATGTACTTATGTGTGCATAGTTT-CTAAACAAA-CACCCAAAAACACAAAACACA 2258
Query 2316 aacacacacacacacacatctgacaccacaaacTGAAATATCAAGGTC-TCATCGAtctt 2374
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 2259 --CACACACACACACACATCTGACACCACAAACTGAAAAATCAAGATCATCATCGATCTT 2316
Query 2375 cgatttttcagtgaatacaattctttttcacattctttcccttttgttcttttctttctc 2434
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2317 CGATTTTTCAGTGAATACAATTCTTTTTCACATTCTTTCCCTTTTGTTCTTTTATTTCTC 2376
Query 2435 actgtctcttgtttgtttcttctt--gttcattgttttcttcttcCA-ACC-CCCACATG 2490
||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||
Sbjct 2377 ACTCTCTCTTGTTTGTTTCTTCTTCTGTTCATTGTTTTCTTCTTCAACACCACCCACATG 2436
Query 2491 AACAAAAAACTCTAGCTAAAAGGTCTTTTAGATTATTTTGGAGTTGTAATTTCATCAGCA 2550
|||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||
Sbjct 2437 AACAAAAA-CTCTAGCTAAA-GGTCTTTTAGATTATTT-GGAGTTGTAATT-CATCAGCA 2492
Query 2551 AGTCTCACACtttttt-tttttCTC-TTAAAA-CATTTGTTGATTGGTTAATTGGGGAAT 2607
|||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||||
Sbjct 2493 AGTCTCACACTTTTTTCTTTTTTTCCTTAAAAACATTTGTTGATTGGTTAATTGGGGAAT 2552
Query 2608 AAAGAGTCTTTATTTT 2623
||||||||||| ||||
Sbjct 2553 AAAGAGTCTTTTTTTT 2568
Score = 100 bits (54), Expect = 4e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1 ATTCTCTTTCTCTCTATCTATCATCATCATCCTCGTAATCCTCTCCTTTCTCCTTCA 57
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATTCTCTTTCTCTCTATCTATCATCATCATCCTCGTAATCCTCCCCTTTCTCCTTCA 57
> Ahg927082 jgi|Araly1|927082|scaffold_202643.1
Length=1837
Score = 89.8 bits (48), Expect = 9e-17
Identities = 99/123 (80%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 488 AAAGCTCCTCTT-TGGGAACATGTTTCCAGGAAGCTATTGGAG-TTAGGTTACA-AACGA 544
|||| ||| ||| |||||| | ||||| ||||| | |||| || ||||||| || ||
Sbjct 264 AAAGGTCC-CTTATGGGAAGAGGTTTCTAGGAAAATGGCGGAGCTT-GGTTACATAA-GA 320
Query 545 AGTTCAAAGAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAACGTACTAAA 604
| |||||||||||||||||||||||||||||||| | ||||| ||||||| || |||
Sbjct 321 AACGCAAAGAAATGCAAAGAGAAATTCGAAAACGTTTACAAATACCACAAACGAACCAAA 380
Query 605 GAA 607
|||
Sbjct 381 GAA 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98958456510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5