BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33250.1
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922420 jgi|Araly1|922420|scaffold_103701.1 2641 0.0
> Ahg922420 jgi|Araly1|922420|scaffold_103701.1
Length=1691
Score = 2641 bits (1430), Expect = 0.0
Identities = 1608/1695 (95%), Gaps = 8/1695 (0%)
Strand=Plus/Plus
Query 120 GGAAATGTGCGCTTGGGGCGATGCGTTTAATTCTCACCGTCATGTGCTCATTCATTCCTT 179
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 1 GGAAATGTGCGCTTGGGGCGATGCGTTTAATCCTCACCGTAATGTTCTCATTCATTCCTT 60
Query 180 ACCTTTATTCATCTTCTCCTCACCGTCCTTGCTCTTCCCCAATCTCTCGTCCTCCTCCTC 239
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 ACCTTTATTCTTCTTCTCCTCACCGTCCTTGCTCTTCCCCAATCTCTCG---TCCTCCTC 117
Query 240 GAATCCGTCCTTGTCGTCTCAGTCGTTTCGCCACCGCATTAGTCGCTACCTCCGCTCTTC 299
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAATCCGTCGTTGCCGTCTCAGTCGTTTCGCCACCGCATTAGTCGCTACCTCCGCTCTTC 177
Query 300 TTCTCGCTTCCGTCGCTTGGCTTTCTCTCGTCTTCTCACCAACCACTTCCCGTTGTTGGC 359
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct 178 TTCTCGCTTCCGTCGCTTGGCTCTCTCTCGTCTTCTCTCCAACCACTTCTCGTTGCTGGC 237
Query 360 ATCTTCTTAAAGATTGGGAAGACAATCATCTCTGGAACAAACGGTACCATCATCCAATTG 419
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 238 ATCTCCTTAAAGATTGGGAAGACAACCATCTCTGGAACAAACGGTACCATCATCCCATTG 297
Query 420 TAACTCCTCCTCCGCCGCCGCCGTCGCCGCCGTCTCTTCCAGCTCTTCCGTTATTCGATC 479
||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 298 AAACTCCTCCTCCGCCACCGCCGTCGTCGCCGTCTCTTCCAGCTCTTCCTTTATTCGATC 357
Query 480 ATGAATTTAGAAATCGTAGTCTCTCAGAGATTGATAAACTTGATC---TGTCTATGAATC 536
||||||||||||| ||||||||||| |||||||||| |||||||| ||||| ||||||
Sbjct 358 ATGAATTTAGAAACCGTAGTCTCTCGGAGATTGATAGACTTGATCTGTTGTCTCTGAATC 417
Query 537 ACTTGATGTTTGGTATTGCTGGATCTTCACAGCTTTGGGAACGTCGTAAGGAACTTGTGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACTTGATGTTTGGTATTGCTGGATCTTCACAGCTTTGGGAACGTCGTAAGGAACTTGTGA 477
Query 597 GATTATGGTGGAAACCTTCTCAGATGCGTGGACATGTCTGGCTTGAAGAGCAAGTTTCTC 656
| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 478 GGCTATGGTGGAAACCTTCTCAGATGCGTGGTCACGTTTGGCTTGAAGAGCAAGTTTCTC 537
Query 657 CTGAGGAAGGTGATGATTCTCTTCCTCCTATAATTGTCTCTGAAGACAGCTCTCGTTTTC 716
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 CTGAGGAAGGTGATGATTCACTTCCTCCTATCATTGTCTCTGAAGACAGCTCTCGTTTTC 597
Query 717 GTTACACTAATCCTACTGGTCATCCTTCTGGACTTCGAATCTCTCGTATTGCTATGGAGT 776
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 598 GTTACACTAATCCCACTGGTCATCCTTCTGGACTTCGAATCTCACGCATTGCTATGGAGT 657
Query 777 CTTTTCGTCTCTCTCTCCCTAATGTTCGGTGGTTTGTTCTTGGTGATGATGATACTATCT 836
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 658 CTTTTCGTCTCTCTCTCCCTAATGTTCGGTGGTTTGTTCTTGGAGATGATGATACTATCT 717
Query 837 TCAATGTTCATAATCTTCTTGCTGTGTTAAGCAAGTATGATCCTTCGGAGATGGTTTATA 896
|||||||||| ||||| ||||| || ||||||||||| ||||||| |||||||||||||
Sbjct 718 TCAATGTTCACAATCTACTTGCCGTATTAAGCAAGTACGATCCTTTGGAGATGGTTTATG 777
Query 897 TTGGAAACCCCTCGGAGAGCCACTCTGCTAACTCTTACTTTAGTCATAACATGGCTTTTG 956
| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 778 TAGGAAACCCCTCGGAGAGTCACTCTGCTAACTCTTACTTCAGTCATAATATGGCTTTTG 837
Query 957 GAGGCGGTGGCATTGCCATTAGCTACCCTTTAGCGGAAGCTCTCTCCCGGATTCACGACG 1016
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 838 GAGGCGGTGGCATCGCCATTAGCTACCCTTTAGCTGAAGCTCTCTCTCGGATTCATGACG 897
Query 1017 ATTGTCTCGATAGATACCCGAAGCTATACGGTAGTGATGATCGTCTCCACGCCTGCATCA 1076
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 ATTGTCTCGATAGATACCCGAAGCTATACGGTAGTGATGATCGCCTCCACGCCTGCATCA 957
Query 1077 CTGAACTCGGAGTTCCTTTGTCCAGAGAGCCTGGCTTTCACCAGTGGGATATTAAGGGAA 1136
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTGAACTCGGAGTTCCTTTATCCAGAGAGCCTGGCTTTCACCAGTGGGATATTAAGGGAA 1017
Query 1137 ATGCTCATGGTCTCTTGTCCTCTCATCCTATTGCACCATTTGTCTCAATTCATCACGTTG 1196
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1018 ATGCTCATGGTCTCTTGTCCTCTCATCCCATTGCACCTTTTGTCTCAATTCATCATGTTG 1077
Query 1197 AAGCTGTTAATCCTCTCTATCCGGGATTATCTACATTAGATAGTTTGAAACTCTTGACAA 1256
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 AAGCTGTTAATCCTCTCTATCCGGGATTATCGACATTAGATAGTTTGAAACTCTTGACAA 1137
Query 1257 GAGCTATGAGTTTGGATCCTAGGAGTGTTTTGCAGCGATCGATCTGCTATGATCATACTC 1316
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 1138 GAGCTATGAGTTTGGACCCCAGGAGTGTTTTGCAGCGATCGATCTGCTACGACCATACTC 1197
Query 1317 ACAAACTGACATTTGCGATATCTCTTGGTTATGTTGTACAAGTTTTCCCAAGTATTCTCC 1376
| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1198 ATAGACTGACATTTGCGATATCTCTTGGTTATGTTGTACAAGTTTTCCCGAGTATTCTCC 1257
Query 1377 TACCACGGGATCTTGAGCGAGCTGAACTTTCTTTCTCTGCTTGGAACGGGATAAGTCAAC 1436
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1258 TACCACGGGATCTTGAGCGAGCTGAACTTTCCTTCTCTGCTTGGAACGGGATAAGTCATC 1317
Query 1437 CCAGTGAGTTTGATCTTGACATAAAGCTTCCAATTTCGTCTCTCTGTAAGAAGCCTATCC 1496
| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1318 CGGGTGAGTTTGATCTTGACATAAAGCTTCCAATTTCATCTCTATGTAAGAAGCCTATCC 1377
Query 1497 TCTTCTTCTTGAAAGAGGTTGGCCAAGAAGGTAATGCTACACTTGGAACGTACTCAAGAT 1556
||||||||||||||||||| || ||||| || || |||||||| ||||||||||| ||||
Sbjct 1378 TCTTCTTCTTGAAAGAGGTAGGACAAGATGGCAACGCTACACTCGGAACGTACTCGAGAT 1437
Query 1557 CCTTGGTAAAGGATGATTTGAAGACGAAGCTTCTATGTTTTCCACGCTCTCTACCTCTGC 1616
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1438 CCTTAGTAAAGGATGATTTGAAGACGAAGCTTCTATGTTTTCCACGCTCTCTTCCTCTGC 1497
Query 1617 ACAAAGTGGATAAA-ATCCAGGTCTCAGGGTTTCCTCTGAGTAAAAATTGGCACTTGGCG 1675
|||| ||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1498 ACAAGGTGGA-AAAGATCCAAGTCTCAGGGTTTCCTCTGAGTAAAAATTGGCATTTGGCG 1556
Query 1676 CCGAGACGGTTGTGTTGCAGAGCAACCCCAACTACTACTAACGAGCCTCTCAGATTAACA 1735
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1557 CCGAGACGGTTGTGTTGCAGAGCAACCCCAACTACTACTAATGAGCCTCTCAGATTAACA 1616
Query 1736 GTTGGGCAGTGTGGTAAGATAATTTTGGGTTCCACGATTAGTTCTCAATGAACACTTATG 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GTTGGGCAGTGTGGTAAGATAATTTTGGGTTCCACGATTAGTTCTCAATGAACACTTATG 1676
Query 1796 GTGAATACTGGATCT 1810
|||||||||||||||
Sbjct 1677 GTGAATACTGGATCT 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77475558330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5