BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33260.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313871 jgi|Araly1|313871|fgenesh1_pm.C_scaffold_1002651 1567 0.0
Ahg489882 jgi|Araly1|489882|fgenesh2_kg.6__3016__AT4G10390.1 571 5e-162
> Ahg313871 jgi|Araly1|313871|fgenesh1_pm.C_scaffold_1002651
Length=1578
Score = 1567 bits (848), Expect = 0.0
Identities = 970/1030 (94%), Gaps = 3/1030 (0%)
Strand=Plus/Plus
Query 288 ATGTCTTGTTTCTTAAGCTGTGTCCGTTTCGAAACAACCACCGACAACAACAAACCCACG 347
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1 ATGTCTTGTTTCTTAAGCTGTGTCCGTTTTG--A-TACCACCGACAACAACAAACCCACG 57
Query 348 AGTACAGAATCTGGTTCTGTCTCCGGTGTTACCTGTTATACCTGGGATGATGTTGAGTCT 407
| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 58 ATTACAGAATCTGGTTCTGTCTCCGGTGTTACTTGTTATACTTGGGATGATGTTGAGTCT 117
Query 408 CTCACTTCCAATTTCTCTAGACTTATTGGTACTGGTGGCTATAGTAGTATCTACTTAGCT 467
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 118 CTCACTTCCAATTTCTCTAGACTTATTGGTACTGGTGGATACAGTAGTATCTACTTGGCT 177
Query 468 CGTGTGTCTGGTTCTATCAACGCAGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTAT 527
||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 178 CGTTTGTCTGGCTCTATCAACGCTGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTAT 237
Query 528 CAAGTGTTTAGGTCTGAGCTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAG 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGTGTTTAGGTCTGAGCTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAG 297
Query 588 CTTCTTGGTTACTTTGACGATTCAGAAGAAAGTGGAGCACTATTACTAGAGTACCTTCCT 647
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 298 CTTCTTGGTTACTTTGACGATTCAGAGGAAAGTGGTGCACTATTACTAGAATACCTTCCT 357
Query 648 CAAGGTAACCTTCAAGAGAAGCTTAACCGGAACAGCAAACAAGTGTTACCATGGAGAAAC 707
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 358 CAAGGTAACCTTCAAGAGAAGCTTAACCGCAATAGCAAACAAGTGTTACCATGGAGAAAC 417
Query 708 AGAACCGCTATTGCGTTTCAGGTTGCGCAAGCAATTGAACATATTCATGAGAAATGTAGT 767
| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 CGTACCGCTATAGCGTTTCAGGTTGCGCAAGCGATTGAACATATTCATGAGAAATGTAGT 477
Query 768 CCTCAGATTGTGCACGGTGACATCAAATCTTCCAACATACTTCTTGACAAACATTTCAAC 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCTCAGATTGTGCACGGTGACATCAAATCTTCCAACATACTTCTTGACAAACATTTCAAC 537
Query 828 TCCAAGCTTTGTGATTTCGGATCAGCTAAAGTTGGTTTCTCGTCTATGGTTCAGCCTTCT 887
||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||
Sbjct 538 TCCAAGCTTTGTGATTTTGGATCAGCTAAGGTCGGGTTCTCGTCTATGGTTCAGCCTTCT 597
Query 888 AAGACGACGTCAACTATGTCACCACGATCCAAGCAAGTGATGATGATTGGTTCTCCAGGG 947
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 AAGACGACGTCAACTATGTCACCACGATCTAAGCAAGTGATGATGATTGGTTCTCCAGGG 657
Query 948 TACACAGATCCTCATTACTTGAGAACTGGTATTGCTTCGAAGAAGATGGATATGTATGGG 1007
||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 658 TACACTGATCCTCACTACTTGAGAACAGGTATTGCTTCCAAGAAGATGGATATGTATGGG 717
Query 1008 TTTGGAGTGGTGGTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGTTCTGAGAGAGGT 1067
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 TTTGGAGTGGTGGTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGCGCTGAGAGAGGC 777
Query 1068 GAGATGTTGGTGCATTCAACAGCTTCGTTGATACATGAGATTCTTGATTCGAATGGAGAT 1127
|||||| |||| ||| || ||||| ||||||| || || |||||||||||||||||||||
Sbjct 778 GAGATGCTGGTACATACATCAGCTCCGTTGATCCACGATATTCTTGATTCGAATGGAGAT 837
Query 1128 ATTGGAGAAGAGAAAGTGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGATGGTAGTATT 1187
|| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 838 ATCGCAGAAGAGAAAGCGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGACAGTAGTCTT 897
Query 1188 GATTTGGAAGAGGTTAAGACAATGCTACGTGTGGCTGCTTTCTGTCTTCGTAGCCCTCCA 1247
||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 898 GATATAGAAGAGGTTAAGACAATGCTAGGTGTGGCTGCTTTCTGTCTTCGCAGCCCTCCA 957
Query 1248 TCGCTGAGACCCTCTGCTTCTCAAGTAGTTCAAACTCTTAACAAGAAGATACCGTCTCTA 1307
|||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||| ||
Sbjct 958 TCGCTGAGACCCTCGGCTTCTCAAGTAGTCCAAACTCTTATCAAGAAGATCCCGTCGCTG 1017
Query 1308 TCTTTCCTCG 1317
||||||||||
Sbjct 1018 TCTTTCCTCG 1027
> Ahg489882 jgi|Araly1|489882|fgenesh2_kg.6__3016__AT4G10390.1
Length=1547
Score = 571 bits (309), Expect = 5e-162
Identities = 771/985 (78%), Gaps = 68/985 (7%)
Strand=Plus/Plus
Query 372 GGTGTTACCTGTT--A-TACCTGGGATGATGTTGAGTCTCTCACTTCCAATTTCTCTAGA 428
||||| || |||| | || |||||||||||| || |||| ||||||||||||||||||
Sbjct 312 GGTGTGACTTGTTACAGTAGCTGGGATGATGTGGAAACTCTTACTTCCAATTTCTCTAGA 371
Query 429 CTT-ATTGGTACTGGTGGCTATAGTAGTATCTACTTAGCTCG-TGTGTCTGGTTCT-ATC 485
|| |||||| ||||||||||||||||||||||| | ||||| | | ||||| ||| ||
Sbjct 372 -TTGATTGGTTCTGGTGGCTATAGTAGTATCTACATGGCTCGCT-TCTCTGGCTCTGAT- 428
Query 486 AACGCAGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTATCAAGTGTTTAGGTC-TGA 544
|| || ||||||||||||||||| ||||| || ||||||||||| || |||| | | |||
Sbjct 429 AAAGCGGCTCTCAAGGTTCATGTTAGTAGCCACCGTCTTTATCAGGTCTTTA-GACTTGA 487
Query 545 GCTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAGCTTCTTGGTTACTTT-G 603
||||| |||||||| ||||||||||||||| ||||||| |||||||| || || ||| |
Sbjct 488 ACTTGATATTTTGCTCCGTCTTCAACATCCTAACATTGTGAAGCTTCTCGGCTA-TTTCG 546
Query 604 ACGATTCAGAAGAAAGTGGAGCAC-TATTACTAGAGTACCTTCCTCAAGGTAACCTTCAA 662
| |||||||| |||| ||| || | | || || || || ||||||||||| || || |||
Sbjct 547 ATGATTCAGAGGAAAATGGTGCTCTTCTT-CTTGAATATCTTCCTCAAGGAAATCTACAA 605
Query 663 GAGAAGCT-TAACCGGAACAGCAAACAAGTGTTACCATGGAGAAACAGAACCGCTATTGC 721
|||||||| || | || ||||| ||||| || | |||||| ||| | || |||||
Sbjct 606 GAGAAGCTCCAA-AGCAATAGCAAGCAAGTCTTGCAATGGAGGAACCGTGTAGCGATTGC 664
Query 722 GTTTCAGGTT-GCGCAAGCAATTGAACATATTCATGAGAAATGTAGTCCTCAGATTGTGC 780
||| || ||| | ||||| |||||||| ||||| |||||||||| || ||||| ||||
Sbjct 665 GTTACA-GTTAGTTCAAGCTATTGAACACATTCACGAGAAATGTACCCCGCAGATCGTGC 723
Query 781 ACGGTGACATCAAATCTTCCAACATACTTCTTGACAAACA-TTTCAACTCCAAGCTTTGT 839
|||| ||||| ||| ||||||| |||| || || ||| | ||| || | ||||| ||
Sbjct 724 ACGGGGACATAAAAGCTTCCAATGTACTCCTAGATAAAAACTTT-AATTGTAAGCTATGC 782
Query 840 GATTTCGGATCAGCTAAAGTTGGTTTCTCGTCTATGGTTCAGCCTTCTAAGACGACGTCA 899
|||||||| |||||||||||||| ||||| || ||||||||| | || | | |
Sbjct 783 GATTTCGGGTCAGCTAAAGTTGGATTCTCTTCGATGGTTCAG-C--CT----C--C--C- 830
Query 900 ACTATGTCACC-ACGATCCAAG-CAAGTGATG-ATGATTGGTTCTCCAGGG-TACACAGA 955
|| ||||| || | ||||| || ||||||| | ||| | || || || ||| || |||||
Sbjct 831 ACGATGTCGCCTA-GATCC-AGACAAGTGA-GAATGGTGGGATCACC-GGGTTATACAGA 886
Query 956 TCCTCATTACTTGAGAACTGGTATTGCTTCGAAGAAGATGGATATGTATGGGTTTGGAGT 1015
||||| ||||| | ||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 887 CCCTCACTACTTAAAAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGGTTTGGTGT 946
Query 1016 GGTGGTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGTTCTGAGAGAGGTGAGATGTT 1075
|||||||||||||||||||| || ||||||||| || | |||||||||| ||||||||
Sbjct 947 CGTGGTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTTCTGCTGAGAGAGGCGAGATGTT 1006
Query 1076 GGTGCATTCAACAGCTTCG--TTGAT-ACATGAGATTCTTG-ATTCGAA-TGGAGATATT 1130
||||||| || | | ||| || || | |||||||| ||| |||| || || ||| ||
Sbjct 1007 GGTGCATACAGCTG-TTCCACTT-ATGA-ATGAGATT-TTGGATTC-AAGTGTAGACATA 1061
Query 1131 GGAGAAGAGAAAGTGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGATGGTAGTATTGAT 1190
| |||| | |||||||||||||||||||| || ||||||| || | ||| |||||
Sbjct 1062 GCAGAAAACAAAGTGAGACAGTTCTTGGACCCGAGGTTGTTAAGTAAC---AGTCTTGAT 1118
Query 1191 -TTGGAAGAGGTTAAGACAATGCT-ACGTGTGGCTGCT-TTCTGTCTTC-GTAGCCCTCC 1246
||| | ||||| ||||||||||| | | | ||||| || ||| | | ||||| |
Sbjct 1119 ATTG-ATGAGGTAAAGACAATGCTGAA-TATTGCTGCGCTT-TGTAT-CAGTAGCAAACT 1174
Query 1247 ATCGCTGAGACCCTCTGCTTCTCAAGTAGTTCAAACTCTTAACAA-G-AAGATACCGTCT 1304
||| || ||||| || ||| ||||||||| ||||||| || || | || || || |||
Sbjct 1175 ATCTCTAAGACCTTCCGCTGCTCAAGTAGCGGAAACTCT-AATAAAGGAA-ATCCCATCT 1232
Query 1305 CT-ATCTTTCCTCGGTTGTGGTAAA 1328
| | |||||||||||||||||||
Sbjct 1233 TTGAG-TTTCCTCGGTTGTGGTAAA 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5