BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33270.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473502 jgi|Araly1|473502|fgenesh2_kg.1__3456__AT1G33270.1 2113 0.0
> Ahg473502 jgi|Araly1|473502|fgenesh2_kg.1__3456__AT1G33270.1
Length=1417
Score = 2113 bits (1144), Expect = 0.0
Identities = 1361/1458 (93%), Gaps = 46/1458 (3%)
Strand=Plus/Plus
Query 111 CATCCTCATGAGTGTTTTGTGAGCTGCGATGATCGTGTGATTTTCAAATCCCTAACTTTT 170
||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 1 CATCCTCATGAGTGTTTTGTGTGCTGCGATGATGGTGTGA-TTTCAAATCCCTAACTTTT 59
Query 171 CGAAATTCCCAAAACCCTCAAATAATCTGAGTGTGACCCATTAATCCATGGCGATGTCTC 230
||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGAAATT--------CC-CAAATAATCTGAGTGTGACCCATTAATCCATGGCGATGTCTC 110
Query 231 TCCGTTCCACTCCATTCATCTCTCTCCGTACGAGAAAAAGCTTTAACCTTTCTCCGAGAA 290
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 111 TCCGTTCCACTCCATTCATCTCTCTCCGTACAAGAAAAAGCTTTAACCTTTCTCCAAGAA 170
Query 291 TTCTCGCCCTTAG-GTTATCATGCTGCT-CTGGTGGGTCTTCTCAAAATCAGAACTTTTC 348
||||||||||||| | |||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 171 TTCTCGCCCTTAGAG-TATCATGCTG-TGCTGGTGGGTCTTCACAAAATCAGAACTTTTC 228
Query 349 TACAGATTCCGAGAACAAGAGATCATTCGCTGTTGCCACCGGTGAGCTTTTCATCGGAAT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TACAGATTCCGAGAACAAGAGATCATTCGCTGTTGCCACCGGTGAGCTTTTCATCGGAAT 288
Query 409 CGCGTCGAGGCTTTTGAAGAGTTCTAATCAAAAGACGCCGCCGATTGATGATGGTGATAG 468
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 289 TGCGTCGAGGCTTTTGAAGAGTTCTAATCAAAAGATGCCGCCGATTGATGATGGTGATAG 348
Query 469 AATAGCTAGTGTAATTGAGGATGAGATTGAGCCAGCGATGATATGGGAACAAAGGGTTAA 528
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 349 AATAGCAAGTGTAATTGAAGATGAGATTGAGCCAGCGATGATATGGGAACAAAGGATTAA 408
Query 529 AGATGTTGAAGCGGAGAAAGAGAGGAGAGTCATTACAAGTCCTGGGTTTAGTTTCTCTGC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGATGTTGAAGCGGAGAAAGAGAGGAGAGTCATTACAAGTCCTGGGTTTAGTTTCTCTGC 468
Query 589 TGCTGGTCTTTTGTTTCCTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TGCTGGTCTTTTGTTTCCTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTA 528
Query 649 CATAAAGGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGAT 708
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 529 CATAAAGGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATTGTCTGTGCTGTCAT 588
Query 709 AACCTCAGGAGCTACTATGCGAGAAGCCCTTGAAGCTACTAAGGAACTTGCTTATGATTG 768
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AACCTCAGGAGCCACTATGCGAGAAGCCCTTGAAGCTACTAAGGAACTTGCTTATGATTG 648
Query 769 TCGACGCAATGGCACTGCTTTCCGTCTTGGGGCTGTCCTTAGAGAATCCATGGAGAGGTT 828
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 649 TCGACGCAATGGCACTGCTTTCCGTCTTGGGGCTGTCCTCAGAGAATCCATGGAGAGGTT 708
Query 829 ACTGCCCGATGATATTCACATTAGGTCCAACGGGAGAATTCGTGTTGCCATCACTCAAGT 888
|||||| ||||||||||| | ||||||||||||||||||||||||||||||||| || ||
Sbjct 709 ACTGCCAGATGATATTCATACTAGGTCCAACGGGAGAATTCGTGTTGCCATCACCCAGGT 768
Query 889 GTTTTGGAGACCTAGAGGTCTT-CTAGTGGATCAGTTCGACTCCAAAAGCGACTTGATAG 947
||| ||||||||||||||| || |||||||||||||| |||||||| |||||||||||||
Sbjct 769 GTTCTGGAGACCTAGAGGT-TTACTAGTGGATCAGTTTGACTCCAAGAGCGACTTGATAG 827
Query 948 ATGCAGTTTTCACATCTTCTTTTATTCCAGGATATCTTGCACCAAGGCCTGCAACAATGT 1007
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 828 ATGCAGTTTTCACATCTTCTTTTATTCCAGGATATCTTGCACCAAGACCTGCAACGATGT 887
Query 1008 TCCGTAATCGACTTTGTGTTGATGGAGGCTTGACATTGTTTATGCCACCAACAGCTGCTG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCCGTAATCGACTTTGTGTTGATGGAGGCTTGACATTGTTTATGCCACCAACAGCTGCTG 947
Query 1068 CTAAAACAGTTCGAGTTTGTGCTTTTTCCGCTAGTAACTTCAAACTAAAGGGTATTGAGA 1127
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 948 CTAAAACAGTTCGAGTTTGTGCTTTTTCCCCGAGTAACTTCAAACTAAAGGGTATTGAGA 1007
Query 1128 TCTGCCCAGATTGCAACCCTTTAAACAGAGCAACATCTAGACAACTATTGAATTGGGCAC 1187
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1008 TCTGCCCAGATTGCAACCCTTTAAACAGGGCAACATTTAGACAACTATTGAATTGGGCAC 1067
Query 1188 TTGAGCCAGCAGAGGACGAGGTGTTGGAGAGGCTGTTTGAGTTAGGATACGCAGATGCAG 1247
|||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1068 TTGAGCCAGCAGAGGACGAGGTGTTGGAAAATCTGTTTGAGTTGGGATACGCAGATGCAG 1127
Query 1248 CTACATGGGCTGAGATGAATCCAGTTGAGGGATTGGTCTATGACGATACTCCTACAGCTC 1307
|||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 1128 CTACGTGGGCTGAGATGAATCCAGTTGAGGAACTGGTCTATGACGATACTCCTACCGCTC 1187
Query 1308 AAGAGATTCCTACT-AGCTAAGAACTCACGAACTCAATACTATATAACAGTACCATATAT 1366
|||||||| ||||| || ||||||| ||||||||||||||||||| |||||| || | |
Sbjct 1188 AAGAGATTGCTACTTAGTTAAGAACACACGAACTCAATACTATATTACAGTA--AT-TCT 1244
Query 1367 TATCGCGGTACAAAATATTCAGATAGTTTTCCAGAAGCTGGCTTTAAAGTCACAGAAAGT 1426
| | || | | ||| ||||||||||||| ||||||||||||||||
Sbjct 1245 ----G----A-----TA----G-T--TTT-CCAGAAGCTGGCTCTAAAGTCACAGAAAGT 1283
Query 1427 TGTAGTTCTTAGATCAAACAAAGTAAATGGTACATCACTTTTAGTCGGAGTTCATACACT 1486
||||||||||||||||||||||| ||||||||||||||| | ||| | |||||| |||
Sbjct 1284 TGTAGTTCTTAGATCAAACAAAGCAAATGGTACATCACTATCAGTTG---TTCATATACT 1340
Query 1487 TGTTCATCAA-AATAACATGTGCTTCGAGGAGTCGCTGTTAAGACCAAACCATTCTCAAT 1545
|||||||||| || |||||||||||||||| |||||| ||| ||||||| ||||||||||
Sbjct 1341 TGTTCATCAAGAA-AACATGTGCTTCGAGGCGTCGCTATTAGGACCAAAACATTCTCAAT 1399
Query 1546 AGAGTTGTCCACAAATTT 1563
||||||||||||||||||
Sbjct 1400 AGAGTTGTCCACAAATTT 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5