BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33280.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473504 jgi|Araly1|473504|fgenesh2_kg.1__3458__AT1G33280.1 1402 0.0
> Ahg473504 jgi|Araly1|473504|fgenesh2_kg.1__3458__AT1G33280.1
Length=924
Score = 1402 bits (759), Expect = 0.0
Identities = 870/925 (94%), Gaps = 2/925 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCGTCTAACGGAGGTGTACCGCCTGGTTTTCGGTTTCATCCAACGGACGAAGAA 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1 ATGAGTTCGTCTAACGGAGGTGTACCGCCCGGTTTTCGATTTCATCCAACGGACGAAGAA 60
Query 61 CTTCTTCATTACTACTTGAAGAAGAAGATTTCTTATGAAAAGTTTGAGATGGAAGTCATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTTCATTACTACTTGAAGAAGAAGATTTCTTATGAAAAGTTTGAGATGGAAGTCATC 120
Query 121 AAAGAGGTTGATTTGAACAAGATTGAGCCGTGGGATTTACAAGATAGATGCAAAATAGGA 180
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AAGGAGGTTGATTTGAACAAGATTGAGCCGTGGGATTTACATGATAGATGCAAAATAGGA 180
Query 181 TCAACGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGG 240
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAACGCCGCAAAACGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGT 240
Query 241 TCAAGGACAAACCGTGCAACCCACTCCGGTTTTTGGAAGGCGACAGGACGTGACAAATGC 300
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 241 TCAAGGACGAACCGGGCAACCCACTCGGGTTTCTGGAAGGCGACAGGACGTGACAAATGC 300
Query 301 ATAAGAAATTCTTACAAGAAGATCGGCATGAGGAAGACTCTTGTATTCTACAAAGGAAGA 360
|||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 ATAAGAAATTGTTACAAGAAGATAGGCATGAGGAAGACTCTTGTCTTCTACAAAGGAAGA 360
Query 361 GCTCCTCATGGCCAAAAGACAGATTGGATCATGCACGAGTACCGTATCGAAGACACTGAA 420
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 361 GCTCCTCATGGCCAAAAGACCGATTGGATCATGCACGAGTACCGTATTGAAGACACTGAC 420
Query 421 GATGACCCTTGTGAAGATGGATGGGTTGTTTGTAGAGTGTTCAAGAAGAAAAATCTGTTC 480
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 421 GATGACCCTAGTGAAGATGGATGGGTTGTATGTAGAGTGTTCAAGAAGAAAAATCTATTC 480
Query 481 AAAGTAGGGAATGATGTTGGCTCAAACATCAGCAATAATAGGCTTGAAGCTCGTAGTTTC 540
|||||||||||||||||| |||||| ||| | ||| |||||||||||||||||||| |||
Sbjct 481 AAAGTAGGGAATGATGTTAGCTCAAGCATTAACAACAATAGGCTTGAAGCTCGTAGCTTC 540
Query 541 ATCCGAAGAGAAAGCCCTTACCAAGGAATCTCAATGTTTGAGCTTAACAAGCCTGAAGAG 600
|| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTCGCAGAGAAAGCTCTTACCAAGGAATCTCAATGTTTGAGCTTAACAAGCCTGAAGAG 600
Query 601 ATTAGTGTTCATCAATATCCTCAACCACCAATGTTTCAACCTCATCACAAGCCTCTTTCA 660
||| || |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 ATTGGTATTCATCAATACCCTCAACCACCAATGTTTCAGCCTCATCACAAGCCTCTTTCA 660
Query 661 ATAGGCTATGACTATTCATTGGCTCTTCTACCAAGAGAAAGCGAGTACCAACAAGCGTGT 720
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 ATTGGCTATGACTATTCATTGGCTCTTCTTCCAAGAGAAAGCGAGTACCAACAAGCGTGT 720
Query 721 CAGCCATCAGGGGTTGAGGTTGGCACGTGCAAGGCAGTAAGTGAATGGGGAATAGTGAAT 780
||||||||||||||||||||||||||||||| | || ||||||||||||| |||||
Sbjct 721 GAGCCATCAGGGGTTGAGGTTGGCACGTGCAAAACTGTTGGTGAATGGGGAATGGTGAAC 780
Query 781 TGT-AACATGGTGAGTCATGAGGACTCGTCTAGAGCGATGAGGTTTGAAGATGACGGTAA 839
||| || |||| || ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 781 TGTCAA-ATGGGGATTCATGAGGACTCGTCTAGAGCGATGAGGTTTGAAGATGAAGGAAA 839
Query 840 CAACACTTCTTCCACGGTCCAGCCACCTTCTAATCTGCTTTCATTGCGCGGTGAAAATGG 899
||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 CAACAATCCGTCCACGGTCCAGCCACCTTCGAATCTGCTTTCATTGCGCGGTGAAAATGG 899
Query 900 ATTTCTTGGGTTGTTTTAAACAGAT 924
|||||| ||||||||||||| ||||
Sbjct 900 ATTTCTCGGGTTGTTTTAAATAGAT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5