BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33290.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473506 jgi|Araly1|473506|fgenesh2_kg.1__3460__AT1G33290.1 1820 0.0
> Ahg473506 jgi|Araly1|473506|fgenesh2_kg.1__3460__AT1G33290.1
Length=1237
Score = 1820 bits (985), Expect = 0.0
Identities = 1169/1256 (93%), Gaps = 20/1256 (2%)
Strand=Plus/Plus
Query 23 AACTATGGCCGGAGTTTGCGTCCCATGGGGCGGCGGAGCTTGTCGTCTTATTTCCCCAAT 82
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AACTATGGCCGGCGTGTGCGTCCCATGGGGCGGCGGAGCTTGTCGTCTTTTTTCCCCAAT 60
Query 83 TCGCCGGCGTTTTCCGGTTTCCTCCTCCGTCGCTTCTCTTGCTCTTCCAGACTCCTCCTC 142
| ||||||||| ||||||||||||| |||||||||| ||| |||||||||| |||||| |
Sbjct 61 TAGCCGGCGTTCTCCGGTTTCCTCCACCGTCGCTTCCCTTTCTCTTCCAGATTCCTCCGC 120
Query 143 TATGATCGTCGACGACAATCTCGGCGCATTTCTCGAGATTCTTCCAAAAGATCTTCGTCA 202
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 121 TATGATTATCGACGACAATCTCACCGCATTTCTTGAGATTCTTCCAAAAGATCTTCGTCA 180
Query 203 CCGTCTCTTGAACGATTCAAGAAGAAACCAGCTCGTAGAGGTCATAATGGATTTAGGAAG 262
|||||| |||||||||| |||||||||||||||||||||| || |||||||| || ||
Sbjct 181 TCGTCTCCTGAACGATTCTCGAAGAAACCAGCTCGTAGAGGTGATTATGGATTTGGGGAG 240
Query 263 ACCACCTGAAGCACGTTATCTCGGAGAACCTGGAGGTCAATATCTTAGGAACAACGAGGT 322
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 241 ACCACCTGAAGCACGTTATCTTGGAGAACCTGGAGGCCAGTATCTTAGGAACAACGAGGT 300
Query 323 ATCTATGGAAGAGTTAGAGGATGCTCAAGAGCTTGTAGGTGAGTTTGGAGCTGATAATAG 382
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 301 ATCTATGGAAGAGTTAGAGGATGCTCAAGAGCTGGTAGGTGAATTTGGGGCTGATAATAG 360
Query 383 AGCTGGAATAGAAGGTACATTGCACAGGATATCAGCTATTCGTAATCGGAAGGGATTCAT 442
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 361 GGCTGGAATAGAAGGTACATTGCACAGGATATCAGCTATTCGTAATCGGAAAGGCTTTAT 420
Query 443 TGTCGGTTTAACTTGTCGTGTTGGGAGAGCTGTGAGTGGTCACATTGACATGCTTTATGA 502
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TGTCGGTTTGACTTGTCGGGTTGGGAGAGCTGTGAGTGGTCACATTGACATGCTCTATGA 480
Query 503 TCTTCTTCACTATGGCAAAAGCATCTTGTTCGTTGGACGGCCTGGTGTTGGTAAGACCAC 562
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 CCTTCTTCACTATGGCAAAAGCATCTTGTTCGTTGGACGGCCCGGTGTTGGTAAGACCAC 540
Query 563 TGTTTTGCGAGAGATTGCTCGTGTCTTGTCTGATGAATTCCAGAAAAGAGTGGTGATAAT 622
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 TGTTTTGCGAGAGATTGCCCGTGTCTTGTCCGATGAATTCCAGAAAAGAGTGGTGATAAT 600
Query 623 TGATACAAGCAACGAAATAGGAGGAGATGGTGATATTCCACACTCAGCTATTGGAGGTTC 682
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 TGATACAAGCAACGAAATAGGAGGAGATGGCGATATTCCACACTCAGCTATTGGAGGTTC 660
Query 683 GCGTAGAATGCAAGTACCTAAGCCATCTTTGCAGCATAAAGTGATGATTGAGGCAGTTGA 742
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 661 GCGTAGAATGCAAGTACCTAAGCCATCATTGCAGCATAAAGTGATGATTGAGGCAGTAGA 720
Query 743 GAATCATATGCCTCAAGTGATCATCGTTGATGAGATTGGCACAGAAGCTGAAGCACTTGC 802
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 721 GAACCATATGCCTCAAGTGATCATCGTTGATGAGATCGGTACAGAAGCTGAAGCGCTTGC 780
Query 803 TTGTCGTTCCATTGCTGAAAGAGGAGTGATGCTAATTGGCACTGCTCATGGAGAGCAGCT 862
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 781 CTGTCGTTCCATTGCTGAAAGGGGAGTGATGCTTATTGGCACTGCTCATGGAGAGCAGCT 840
Query 863 ACAGAACATCATAAAGAATCCTACTCTTTCAGACTTGATTGGTGGTATTGAGACTGTAAC 922
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 841 ACAGAACATCATAAAGAATCCTACTCTTTCAGACCTGATTGGTGGTATTGAGACTGTCAC 900
Query 923 GCTTGGAGATGAAGAAGCGAGGGCGAGAAGGAGTCAGAAGAGTATTCTCGAGAGAAAAGC 982
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 901 TCTTGGAGATGAAGAAGCGAGGGCAAGAAGGAGTCAAAAGAGTATTCTCGAGAGAAAAGC 960
Query 983 TCCACCGACtttttattttttGATCGAGATGAGAGAAAGAGATTATTGGATTGCACATCA 1042
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCCACCGACCTTTTATTTCCTGATCGAGATGAGAGAAAGAGATTATTGGATTGCACATCA 1020
Query 1043 AACTGAAAAGAGTGTTGATATGTTGCTTCGCGGAAGAAATCCCATGGTTGAGGTGAGGAG 1102
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AACTGAAAAAAGTGTTGATATGTTGCTTCGCGGAAGAAATCCCATGGTTGAGGTGAGGAG 1080
Query 1103 AAGGGATGAAGAGTACAAGGTGGTGATAGAAAGATGGAAGGCATACGACGGGCAAGGCAT 1162
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1081 AAGAGATGAGGAGTACAAGGTGGTGATAGAAAGATGGAAGGCGTACGACGGGCAAGGCAT 1140
Query 1163 TTGAG-TTTCCTTCATCGTTGTCAAACTTATGACACTAACAGTAAATGTGTCTTTCTTAA 1221
||| |||| ||||||||||||||| | | | | ||| |||||||||
Sbjct 1141 CTGATCTTTC-TTCATCGTTGTCAAA---A--A---T-----T---TGT--CTTTCTTAA 1181
Query 1222 ATGATCAACCATTTGTGTAAAATAATCAAAAGAAAACAATAAGCATGCATCCGTCT 1277
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 1182 ATGATCAACCATTTGTATAAAATAATCAAAAGAAAACGATAAGCATGCATCAGTCT 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5