BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33330.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473511 jgi|Araly1|473511|fgenesh2_kg.1__3465__AT1G33330.1 1343 0.0
Ahg948629 jgi|Araly1|948629|scaffold_800516.1 492 3e-138
> Ahg473511 jgi|Araly1|473511|fgenesh2_kg.1__3465__AT1G33330.1
Length=983
Score = 1343 bits (727), Expect = 0.0
Identities = 905/990 (91%), Gaps = 16/990 (2%)
Strand=Plus/Plus
Query 18 ATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCCCTCTTCTCCTCCGTCGC 77
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCCCTCTTCTCCTCCGTCAC 60
Query 78 AGTATCCCGT-TACTGTCGGCTCCT-ACTTCTGTTATTTACAATCACAGAACTCTTCTAT 135
||| |||||| || || || || |||| || || ||| ||| ||| ||| ||| ||
Sbjct 61 AGTGTCCCGTCCAC-GTTTTCT-CTGTCTTCCGTCATATACTATCGCAGGACTGTTCCAT 118
Query 136 CCGATGGACTCAGTACTCGATTATGCTCGATTCTCCGTTATTCATCGTCTGACGGCGTCA 195
|| | ||||||||||| ||||| |||||||||||||||||||||||||| || || |
Sbjct 119 CCAACGGACTCAGTACCCGATTCTGCTCGATTCTCCGTTATTCATCGTC---CGTCGACG 175
Query 196 ACGGCGGAAGTAGCGGTGGCGATTTCGGTAACGATAACGATTCCGTTAGTGTTGTTTCGG 255
||| ||||||||| ||||||||| || || | || |||||||||||| |||||| |||
Sbjct 176 GCGGTGGAAGTAGCAGTGGCGATTCCGTTAGCTTTAGCGATTCCGTTAGCGTTGTTGCGG 235
Query 256 ATGTTCAGAGTCCTAATTACTTAAAATTCACCGATGAAGAATTGATGAAGCAATGTAGAT 315
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 236 ATGTTCAGAGTCCTAATTACTTGAAATTCACCGATGATGAATTGATGAAGCAATGTAGAT 295
Query 316 TAGAGACATTTAGAGTTTCAGGACCTGGAGGACAACACCGGAACAAGCGTGACTCCGCCG 375
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TAGAGACATTCAGAGTTTCAGGACCTGGAGGACAACACCGGAACAAGCGTGACTCCGCCG 355
Query 376 TGCGTCTGAAACATCTCCCCACCGGAATCGTAGCTCAAGCCGTCGAAGATCGTTCACAGC 435
||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 356 TGCGTCTCAAACATCTCCCCACCGGAATCGTTGCTCAGGCCGTCGAGGATCGTTCACAGC 415
Query 436 ACAAGAACCGTGCTTCTGCTCTAAACCGTCTTCGTACGCTCCTCGCCATTAAAGTGAGAA 495
|||||||||||||||||||||||||||| |||||||||||||| || || |||||||| |
Sbjct 416 ACAAGAACCGTGCTTCTGCTCTAAACCGGCTTCGTACGCTCCTGGCAATCAAAGTGAGGA 475
Query 496 ACAAAGTGGACATTGAAGCTTATGCTCCTCCTCCAGAGCTTCTTCAGATTCTACCTCCTA 555
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 476 ACAAAGTGGACCTTGAAGCTTATGCTCCTCCTCCAGAGCTTCTTCAGATTCTACCTCCCA 535
Query 556 AGTCTACCATTAGAACTTCTTCTGGTTCACAGATTGGTCCCAACAATCCTAAATTTGTAC 615
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGTCTACTATAAGAACTTCTTCTGGTTCACAGATTGGTCCCAACAATCCTAAATTTGTAC 595
Query 616 CTGGAATGCAAGCTTTGCTTGATGTTATTTCTGCTTCTGACGGTTCTATCGCTGATTCTG 675
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 596 CTGGAATGCAAGCTTTGCTTGATGTTATTTCTGCTTCTGATGGTTCTATCGCCGATTCTG 655
Query 676 CCAAATTGCTGGGTTTGAGCACTGGTGGCTTATCTCGTTTGATACTCTCCCATGATGGTC 735
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CCAAATTACTTGGTTTGAGCACTGGTGGCTTATCTCGTTTGATACTCTCCCATGATGGTC 715
Query 736 TTCGTATGGCTGTCAATAGCATGAGAGCAGCCAAGGGAATAAAGCCTCTCAAATAGTTGG 795
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 716 TTCGTATGGCCGTCAATAGCATGAGGGCAGCCAAGGGAATTAAGCCTCTCAAATAGTTGG 775
Query 796 GATGTATCGGCATTTGAAAGATGACGTTCGGGCCTTCGACAAGTTGTAT---G-TGGATT 851
||||||||||||||||||||||||||| |||| ||| ||| |||||||| | ||| ||
Sbjct 776 GATGTATCGGCATTTGAAAGATGACGTGCGGGTCTTTGACGAGTTGTATTTAGGTGGCTT 835
Query 852 --GCAGCACAGTGATTACCATTTTATGCACCATATTTTGTATACaaaaaaaaaGGTGAAA 909
|||||||||||| |||||||| |||||||| || |||||||||||| ||| |||||||
Sbjct 836 CTGCAGCACAGTGACTACCATTTGATGCACCACATATTGTATACAAAACAAA-GGTGAAA 894
Query 910 TGTTGAGTTCAGTTTAACATTTGTTCTTCTAACATCATAAAAATAGTCACGTATTTGAGA 969
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 895 TGTTGAGTTCAGTCTAACATTTGTTCTTCTAACATCATAAAAATAGTCACGTGTTTGAGA 954
Query 970 TGATATACTATAGGT-TGTTCAAATGGTTA 998
||||||||||||| | |||||||||| |||
Sbjct 955 TGATATACTATAG-TCTGTTCAAATGTTTA 983
> Ahg948629 jgi|Araly1|948629|scaffold_800516.1
Length=433
Score = 492 bits (266), Expect = 3e-138
Identities = 344/381 (90%), Gaps = 7/381 (2%)
Strand=Plus/Plus
Query 1 GCGGTGGTTCTTCTGCCATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GCGGTGGTTCTTCTGCCATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCC 63
Query 61 CTCTTCTCCTCCGTCGCAGTATCCCGTT-ACTGTCGGCTCC-TACTTCTGTTATTTACAA 118
||||||||||||||| |||| ||||||| || || ||| | ||||||| || ||| |
Sbjct 64 CTCTTCTCCTCCGTCACAGTGTCCCGTTCAC-GTTTTCTCTGT-CTTCTGTCATATACTA 121
Query 119 TCACAGAACTCTTCTATCCGATGGACTCAGTACTCGATTATGCTCGATTCTCCGTTATTC 178
|| ||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 122 TCGCAGGACTGTTCCATCCGATGGACTCAGTACCCGATTATGCTCGATTCTCCGTTATTC 181
Query 179 ATCGTCTGACGGCGTCAACGGCGGA--A-GTAGCGGTGGCGATTTCGGTAACGATAACGA 235
|||| | ||||||| | ||||||| | |||| ||||||||| ||||| || ||||||
Sbjct 182 ATCGCCCGACGGCGGCGGCGGCGGAGGAAGTAGTAGTGGCGATTCCGGTAGCGTTAACGA 241
Query 236 TTCCGTTAGTGTTGTTTCGGATGTTCAGAGTCCTAATTACTTAAAATTCACCGATGAAGA 295
||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 242 TTCCGTTAGCGTTGTTGCAGATGTTCAGAGTCCTAATTACTTGAAATTCACCGATGATGA 301
Query 296 ATTGATGAAGCAATGTAGATTAGAGACATTTAGAGTTTCAGGACCTGGAGGACAACACCG 355
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 302 ATTGATGAAGCAATGTAGATTAGAGACATTTAGAGTTTCAGGACCTGGAGGAAAACACCG 361
Query 356 GAACAAGCGTGACTCCGCCGT 376
|||||||||||||||||||||
Sbjct 362 GAACAAGCGTGACTCCGCCGT 382
Score = 93.5 bits (50), Expect = 3e-18
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 426 CGTTCACAGCACAAGAACCGTGCTTCTGCTCTAAACCGTCTTCGTACGCTCCT 478
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 380 CGTTCACAGCACAAGAACCGTGCTTCTGCTCTGAACCGTCTTCGTACGCTCCT 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5