BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33340.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473510 jgi|Araly1|473510|fgenesh2_kg.1__3464__AT1G33340.1 1783 0.0
> Ahg473510 jgi|Araly1|473510|fgenesh2_kg.1__3464__AT1G33340.1
Length=1248
Score = 1783 bits (965), Expect = 0.0
Identities = 1145/1229 (93%), Gaps = 24/1229 (2%)
Strand=Plus/Plus
Query 1 ATAAGATTTCCAACATCCAATAGTGTCATTTTTAGTCTGTAGATATCAATGAGGCTTGAT 60
||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATAAGATTTCCAACAGCCAATAGTGTCA--TTTAGTCTGTAAATATCAATGAGGCTTGAT 58
Query 61 TTATCTGCCAAGTTTCGGCAAGTTCTTGGTCTTGCCAAAGATCATGCATCTATTGGCAGA 120
|||||||||||| |||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 59 TTATCTGCCAAGCTTCGGCAAGTTCTTGGCCTCGCCAAAGACCATGCATCTATTGGCAGA 118
Query 121 GCTATTGTACAAAACTACAATGAAAAAGCCTTTTTTGACATTGAAGTGGCAGTGGTTCGA 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GCTATTGTACAAAATTACAATGAAAAAGCCTTTTTTGACATTGAAGTGGCAGTGGTTCGA 178
Query 181 GCCACTAGCCATGATGATTGTCCTGTTGATGATAAAACCATGCACGAGATACTCTTCCTT 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 179 GCCACTAGCCATGATGATTGTCCTGTTGATGACAAAACCATGCACGAGATACTCTTTCTT 238
Query 241 GTCTCTAACACACCGGGATCGATTCCTTTTCTTGCTGAACAGATCTCTCGCCGTCTAGCC 300
||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 GTCTCTAACACTCCGGGAACGATTCCTTTTCTTGCTGAACAGATCTCACGCCGTCTAGCC 298
Query 301 AAGACAAGAGATTGCTTAGTCGCGGGTAAAACACTGTTACTCTTTCACCGTCTCTTGCGT 360
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 299 AAGACAAGAGATTGCTTAGTAGCGGGTAAAACTCTGTTACTCTTTCACCGTCTCTTACGT 358
Query 361 GGTAGCAGTCGCAGTATCGAGCAGCAATTGCATATTGCACACACATCTGGTCATCTTCAA 420
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 359 GGTAGCAGTCGCAGTATCGAGCAGCAACTGCATATTGCACACACCTCTGGTCATCTCCAA 418
Query 421 ATAGGTTGCTCCTGGTTCATGATGAGCCTGGATTCT-CGATCCTTTGTTTTTCTGCAGAA 479
|||||||||| ||||||||||||||||| |||| || || ||||||||||||||||||||
Sbjct 419 ATAGGTTGCTGCTGGTTCATGATGAGCCCGGATCCTCCG-TCCTTTGTTTTTCTGCAGAA 477
Query 480 CTATGTAGCTTATCTCCAAGAAAGAGTTGGATGGATCATCAACCAAGCTGGTAAGCTCGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 CTATGTAGCTTATCTCCAAGAAAGAGTTGGATGGATCATCAACCAAGCTGGTAAGCTTGA 537
Query 540 ACCCGTAATGTCTGGTGGTACAAAGTTTAGCCGTTACAAAGAGAAATCCATGGATCTGGT 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACCTGTAATGTCTGGTGGTACAAAGTTTAGCCGTTACAAAGAGAAATCCATGGATCTGGT 597
Query 600 GTTCCACATCTTACCAAAGTGTCAAGAGTTTATTGCACAGGTGTTGAAGTGTTCACCAGT 659
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 598 GTTCCACATCTTACCAAAGTGCCAAGAGTTCATTGCACAGGTGTTGAAGTGTTCACCGGT 657
Query 660 TGATGCCTGGCCTATCGATAATCTGGTTCAGGCAGCTACGGGCAACATCTTGAAAGAGAG 719
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 658 TGATGCCTGGCCTATCGATAATCTGGTTCAAGCAGCTACCGGAAACATCTTGAAAGAGAG 717
Query 720 TTTCCAAGTCTACATGACGTATTCCGATGGGAT-GACCGCGCTGGTTAGCATGCTCTTTG 778
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 718 TTTCCAAGTCTACATGACGTATTCCGATGGGATAG-CCGCGCTGGTTAGCATGCTTTTTG 776
Query 779 ATCTTTCAAGACCCGCGAGAGATTTAGCTTGCGGAATGTTGAGAAAAGCTTCTCAACAGA 838
|||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 777 ATCTTTCACGACCCGCAAGAGATTTGGCTTGCGGAATGTTGAGAAAAGCTTCTCAACAGA 836
Query 839 TTCAAGATCTTCGCATCCTGTATGACAAGTGTAGAGGATTCGCCGGGATGAAAAGCTTGG 898
|||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 837 TTCAAGATCTCCGCATCCTGTATGAAAAGTGTAGAGGATTTGCCGGTATGAAGAGCTTGG 896
Query 899 ATTACCCATCTGTGCAAGCCATTTCTATGGATCATATAGTAGCACTAGAGGAATGCTCAA 958
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 897 ATTACCCATCTGTGCAAGCCATTACCATGGATCATATAGTAGCACTAGAGGAATGCTCAA 956
Query 959 GCTATGGAGGCAAAAGAGGTTTCTCTCTTTCCACCAACCTAAGAGATGCAATCACCTGCA 1018
|||||||||||||||||| |||||| | |||| |||||||||||| || |||||||||
Sbjct 957 GCTATGGAGGCAAAAGAGACTTCTCTGTCTCCATCAACCTAAGAGACCCAGTCACCTGCA 1016
Query 1019 ATGAACTAAAACAAGAACAGC-A-TT-CTGCCAGTTTTTCATCTACCAGTCCTTTCTCAT 1075
| |||| |||||||||| | | | || | ||| ||||||||||||||||| |||||||||
Sbjct 1017 ACGAACAAAAACAAGAA-A-CTAATTGC-GCCGGTTTTTCATCTACCAGTTCTTTCTCAT 1073
Query 1076 TACCAGTGGAGACCAAAATTAGCATGGTTTGGGTTGTTTTTGACAATGAAGATGGTGAAG 1135
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1074 TACCAGTGGAGACCAAAATCAGCATGGTCTGGGTTGTTTTTGACAATGAAGA-----A-- 1126
Query 1136 AATCAGACAA-GCAAACAGAGAAAGCATATGAACGTTGATCATTCATCTCAACAGGAAGT 1194
|||||||| |||| ||||||||||||| ||| |||||| ||||||||||| |||||||
Sbjct 1127 --TCAGACAATGCAA-CAGAGAAAGCATACGAATGTTGATTATTCATCTCAAAAGGAAGT 1183
Query 1195 GTCTG-GAACGATTATATAATACTAATGT 1222
|||| ||||||||||||||||||| |||
Sbjct 1184 GTCTCTGAACGATTATATAATACTAGTGT 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5