BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33350.1
Length=2285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336411 jgi|Araly1|336411|fgenesh1_pg.C_scaffold_1002976 2372 0.0
Ahg479783 jgi|Araly1|479783|fgenesh2_kg.3__2484__AT3G22690.1 76.8 6e-13
> Ahg336411 jgi|Araly1|336411|fgenesh1_pg.C_scaffold_1002976
Length=1761
Score = 2372 bits (1284), Expect = 0.0
Identities = 1450/1532 (95%), Gaps = 4/1532 (0%)
Strand=Plus/Plus
Query 1 ATGGGGACACGTGTAACACAATTCTCTTACCTCCACGCGCCGTCGTCACACATGGCGGAG 60
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGACACGTGTAACGCAATTCACTTACCTCCACGCGCCGTCGTCACACATGGCGGAG 60
Query 61 CAGTTACTGAATCAATTCATCTCCGCAGTGATATCAAAGTCGAGACATTTGAATCATTTG 120
|||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 61 CAGTTAGTGAATCAATTCATCTCCGCCGCGATCTCAAAGTCGAGACATTTGAATCATTTG 120
Query 121 AAGCAAGTTCAGTCCTTTATGATAGTTTCTGGACTAAGTCATTCACATTTCCTCTGTTTT 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCAAGTTCAGTCCTTTTTGATAGTTTCTGGACTAAGTCATTCACATTTCCTCTGTTTT 180
Query 181 AAGCTTCTTCGTTTTTGTACGCTTCGTCTCTGTAATCTCTCTTACGCTCGCTTTATCTTT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCTTCTTCGTTTTTGTACTCTTCGTCTCTGTAATCTCTCTTACGCTCGCTTTATCTTT 240
Query 241 GATCGTTTCTCTTTCCCCAATACGCATCTT-TACGCTGCCGTTTTAACTGCTTActcttc 299
||||||||||||||||| ||||| ||| || ||||||||||||||||||| |||||||||
Sbjct 241 GATCGTTTCTCTTTCCCTAATACTCAT-TTATACGCTGCCGTTTTAACTGGTTACTCTTC 299
Query 300 ttctcttcctcttcatgcttcttcagctttctccttctttcGTCTCATGGTTAATCGTTC 359
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 300 TTCTCTTCCTCTTCATGCTTCCTCTGCTTTCTCATTCTTTCGTCTCATGGTTAATCGTTC 359
Query 360 TGTTCCTCGGCCTAATCACTTTATCTACCCACTTGTTCTTAAGTCTACACCATATCTCTC 419
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TTTTCCTCGGCCTAATCACTTTATCTACCCTCTTGTTCTTAAGTCTACACCATATCTCTC 419
Query 420 CTCTGCTTTTTCAACTCCTTTGGTGCATACCCATTTGTTTAAATCTGGGTTTCATCTCTA 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 CTCTGCTTTTTCAACTCCTTTGGTTCATACCCATTTGTTTAAATCTGGGTTTCATCTCTA 479
Query 480 TGTCGTTGTTCAAACTGCTCTTCTTCACTCCTACGCTTCCTCTGTTTCTCATATAACTCT 539
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 480 TGTTGTTGTTCAAACTGCTCTGCTTCACTCTTACGCTTCCTCTGTTTCTCATATAACTCT 539
Query 540 TGCAAGACAACTGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGACTGCTATGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCAAGACAACTGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGACTGCTATGCT 599
Query 600 TTCTGGGTATGCTAGGTCTGGTGATATCTCTAATGCTGTTGCTCTTTTTGAAGATATGCC 659
||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 600 TTCTGGGTATGCTAGGTCTGGTGATATCTTTAATGCTGTTGCTCTCTTTGAAGAAATGCC 659
Query 660 TGAGCGTGATGTTCCTTCCTGGAATGCGATTCTTGCTGCTTGTACTCAGAATGGTCTTTT 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAGCGTGATGTTCCTTCTTGGAATGCGATTCTTGCTGCTTGTACTCAGAATGGTCTTTT 719
Query 720 TCTTGAAGCGGTTTCTCTGTTTAGAAGGATGATTAATGAGCCTAGCATTCGTCCTAATGA 779
| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 720 TGTTGAAGCGGTTTCTCTGTTTAGAAGGATGATTAATGACCCTTGTATTCGTCCTAATGC 779
Query 780 GGTAACTGTAGTTTGTGTCCTCTCTGCGTGTGCTCAAACTGGTACGCTTCAGCTGGCTAA 839
||| ||| | |||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 780 GGTTACTTTGGTTTGTGTTCTCTCTGCTTGTGCACAAACTGGTACGCTTCAGCTGGCTAA 839
Query 840 AGGGATTCATGCCTTTGCTTACCGTCGTGATCTTTCTTCTGATGTGTTTGTTTCGAATTC 899
|||||||||||| ||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 840 AGGGATTCATGCGTTTGCGTATCGTCGTAATCTTTCTTCTGATGTGTTTGTTTCGAATTC 899
Query 900 TTTAGTTGACTTGTATGGAAAATGTGGTAACTTGGAGGAAGCAAGCTCTGTTTTTAAGAT 959
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 TTTGGTTGATTTGTATGGAAAATGTGGTAACTTGGAGGAAGCAAGCTCTGTTTTTAAAAT 959
Query 960 G-GCATCCAAGAAAAGTTTAACAGCTTGGAATTCTATGATCAATTGCTTTGCACTCCATG 1018
| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAGT-TCAAAGAAAAGTTTAACAGCTTGGAATTCTATGATCAATTGCTTTGCACTCCATG 1018
Query 1019 GTAGAAGTGAAGAAGCCATAGCTGTGTTTGAAGAAATGATGAAGTTGAACATTAACGATA 1078
|||||||||||||||||||||| |||||||| || |||||||||||||| | | ||||||
Sbjct 1019 GTAGAAGTGAAGAAGCCATAGCAGTGTTTGAGGACATGATGAAGTTGAATAGTCACGATA 1078
Query 1079 TCAAACCAGATCACATTACTTTCATCGGTCTTCTCAATGCGTGTACTCATGGAGGTTTGG 1138
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1079 TCAAGCCAGATCACATTACTTTTATCGGTCTTCTCAATGCGTGTACTCATGGGGGTTTGG 1138
Query 1139 TATCAAAAGGCCGAGGTTATTTCGATCTGATGACAAACAGATTCGGTATTGAGCCAAGGA 1198
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 TATCAAAAGGTCGAGGTTATTTCGATCTGATGACAAAAAGATTCGGTATTGAGCCAAGGA 1198
Query 1199 TTGAGCATTATGGCTGTCTAATAGATCTTTTAGGCAGGGCAGGTCGGTTTGATGAAGCTT 1258
||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 1199 TTGAGCACTATGGCTGTCTAATAGATCTTCTAGGCAGGGCAGGTCAGTTCGATGAAGCTT 1258
Query 1259 TAGAAGTTATGTCCACGATGAAGATGAAAGCGGATGAGGCTATTTGGGGATCACTGCTTA 1318
| ||| ||||||||||||||||||| |||||||||| || |||||||| ||| ||||||
Sbjct 1259 TGGAAACTATGTCCACGATGAAGATGGAAGCGGATGAAGCGATTTGGGGCTCATTGCTTA 1318
Query 1319 ATGCTTGTAAGATACATGGCCATCTGGATTTGGCTGAAGTTGCTGTAAAAAACCTGGTTG 1378
|||||||||| | | |||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 1319 ATGCTTGTAAAAAATATGGCCATTTGGATTTGGCTGAAGTTGCTGTAAAAAATCTTGTTG 1378
Query 1379 CTTTAAATCCTAATAATGGAGGTTATGTCGCTATGATGGCAAATTTATATGGAGAGATGG 1438
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTTTAAATCCCAACAATGGAGGTTATGTCGCTATGATGGCAAATTTATATGGAGAGATGG 1438
Query 1439 GTAATTGGGAAGAGGCACGTAGAGCTAGAAAGATGATCAAGCACCAAAATGCTTATAAAC 1498
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1439 GTAATTGGGAAGAGGCACGCAGAGCTAGAAGGATGATCAAGCACCAAAATGCTTATAAAC 1498
Query 1499 CACCAGGCTGGAGTCGGATTGAGATCGATAAC 1530
||||||||||||||| ||||||||||||||||
Sbjct 1499 CACCAGGCTGGAGTCAGATTGAGATCGATAAC 1530
Score = 169 bits (91), Expect = 1e-40
Identities = 117/129 (91%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 1948 ACAGGTCCATGGACAATCAAACATTCGAGAAGAGGAAGTCTCTTACGCCAAGCATTAGTA 2007
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1636 ACAGGTCCATGGACAATTAAACATTCGAGAAGAGGAAGTCTCTTACGCCAAGCATTGGTA 1695
Query 2008 CTATTTAATTATGATCTTTTAG-TTTTCTAACACTTTCCTCATGTATCTTTATTGAGAAT 2066
|| ||| |||||| |||| || |||| |||||||| ||||||||||||| |||| ||||
Sbjct 1696 CTCGTTAGTTATGA-CTTTAAGCTTTT-TAACACTT-CCTCATGTATCTTCATTGGGAAT 1752
Query 2067 GATCAATAA 2075
|||||||||
Sbjct 1753 GATCAATAA 1761
> Ahg479783 jgi|Araly1|479783|fgenesh2_kg.3__2484__AT3G22690.1
Length=2712
Score = 76.8 bits (41), Expect = 6e-13
Identities = 58/66 (88%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 551 TGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGACT-GCTATGCTTTCTGGGTAT 609
|||| || |||||||||||||||||||||||||||||||| | |||| ||| |||||||
Sbjct 569 TGTTTGATGAAATGTCTGAGAGAAATGTTGTTTCTTGGACGAG-TATGATTTGTGGGTAT 627
Query 610 GCTAGG 615
|| |||
Sbjct 628 GCGAGG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86045863455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5