BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33360.1
Length=2441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473508 jgi|Araly1|473508|fgenesh2_kg.1__3462__AT1G33360.1 3483 0.0
> Ahg473508 jgi|Araly1|473508|fgenesh2_kg.1__3462__AT1G33360.1
Length=2447
Score = 3483 bits (1886), Expect = 0.0
Identities = 2295/2481 (93%), Gaps = 74/2481 (3%)
Strand=Plus/Plus
Query 1 CTTCACTTTCTCCGTTTTTATCGTTTCTCTTCTTCTTCTCCAAATTGATGGCTTTTTAAG 60
|||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1 CTTCACTTTCTCCGGTTTTATCG-TT-TC-TCTTCTTCTCCAAATTGATGGCTTTTTAAG 57
Query 61 GTTTCCCCACTCGATCTAATCTAACCTAACGCTCCTTCATTAACTTT-CTTCAGACAGA- 118
|||||| |||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 58 GTTTCCTTACTCGATCTAATCTAACCTAACGCTCATTCATTAA-TTTCCTTCAGACAGAT 116
Query 119 --TTACAATAACGTGTAATATACA-AGACACAGAAACA-TCATTGATTCCGATCTCAAGT 174
|| ||||||||||| ||||| | | | | || | | |||||||||||||||| ||||
Sbjct 117 TCTTCCAATAACGTGT-ATATATATATA-AAAGGCAGAGTCATTGATTCCGATCTTAAGT 174
Query 175 TTTGTCTTTT-T-GAT-TT-CATATACACAGATACATAGATAACAAACACACATCTTTGA 230
||| | |||| | || || || ||||| | | | | | || | ||| |
Sbjct 175 TTTCTATTTTCTCTATGTTACACATACAAATCTTCGTTTTTTGTTTTCA-AAATC---AA 230
Query 231 TCAAATGTCTGGACTTTGGAGATTGAGGAATCTAAAGTCTCTAGCTTTACATGCTCGTTC 290
||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 231 TCAAATGTCTGGAATTTGGAGATGGAGGAGTCTAAAGTCTTTAGCTTTACATGCTCGTTC 290
Query 291 GATTTCACCTGTTTCCAATCTTTATTCTCTGGAATTAGGATCATGC-CCTCGTCGTCGTA 349
||||||||||||| |||||||||||||| ||||||| || |||| | ||||| |||||||
Sbjct 291 GATTTCACCTGTTCCCAATCTTTATTCTTTGGAATTGGGTTCAT-CGCCTCGCCGTCGTA 349
Query 350 TTCAAGAACGATTCAAATCGGAACAAGGCGGCGGAGGAGGAGGAGGAGATGATTTTCCGG 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTCAAGAACGATTCAAATCGGAACAAGGCGGCGGAGGAGGAGGAGGAGATGATTTTCCGG 409
Query 410 TTCCGGTGACTCGTCGGAAGTTAAGAGCAGAGCCGAATTGTCCTCGTTGCTCAAAGCAAA 469
| || |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 410 TACCTGTGAGTCGTCGGAAGTTAAGAGCGGAGCCGAATTGTCCTCGTTGCTCAAAACAAA 469
Query 470 TGGATCTTCTCTTCTCAAATCGTCAATTTCCATCTTCTAATCTTCTTCAACGTCCTGATG 529
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 470 TGGATCTTCTCTTCTCTAATCGTCAATTCCCATCTTCTAATCTTCTTCAACGTCCTGATG 529
Query 530 ATTCTGATTCCTCCGGTGCCGGAGATAAAACGAACTTCCAGTCTGTTAATTTCTGTCCGA 589
|||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 530 ATTCAGATTCCTCCGGCGCCGGAGATAAAACCAATTTCCAGTCTGTGAATTTCTGTCCGG 589
Query 590 CTTGTAAAACTGCTTATGGATTCAACCCTCGTGGTGTCTCTCCTCTTCAAGGGACATTCA 649
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 590 CTTGTAAAACAGCTTATGGATTCAACCCTCGTGGTGTCTCTCCTCTTCAAGGAACATTCA 649
Query 650 TTGAGATCGGTCGTGTTCAATCTCCAACCACTACTACCACCAATGCTACTACTTCCAAAT 709
||||||||||||||||||||||| | | | ||||||||| ||||||||||||
Sbjct 650 TTGAGATCGGTCGTGTTCAATCT-------C--C-A--ACCAATGCTGCTACTTCCAAAT 697
Query 710 CCACCAGGAAACAACAACAACATTCAAAGGATCCAAATCAAGGATTCAATTACAGGAACA 769
| || ||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 698 CTACAAGG--A-AACAACAACATTCAAAGGATCTAAATCAAGGATTCAATTACAGAAACA 754
Query 770 AGCTTAGATCTTCCTTTTGGGATACACTTAGATCTTACGGTGCTGAGCCACCTGAGGATT 829
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 755 AGCTTAGATCTTCCTTCTGGGATACACTTAGATCTTATGGTGCTGAGCCACCTGAGGATT 814
Query 830 GG-----------------t-ctcctcctcctcct-cat-tc-t-c--ctttgaactctt 865
|| | |||||||||||||| | | || | | ||||||||||||
Sbjct 815 GGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCATCCTTCTTTGAACTCTT 874
Query 866 ctcctcctAATACCATTCCTGTGAACGCTTCTCCTAGTGCCGT-G-GA-TACTTCTCCTT 922
||||||||| ||||||||||||||| |||||||||||| |||| | || |||||||||||
Sbjct 875 CTCCTCCTACTACCATTCCTGTGAATGCTTCTCCTAGTACCGTGGAGACTACTTCTCCTT 934
Query 923 TACCTGATGCAGTTAATGACGTTAGTCGATGGGGTGGTGCTGGCCTTGGCAGAGACTTTC 982
|||||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 935 TACCTGATGCAGCTAATGACGTTAGTCGATGGGGTGGAGCTAGTCTTGGCAGAGACTTTC 994
Query 983 CTACTCCAAAGGAGATTTGTAAATGGCTTGACAAGTTCGTCATTGGCCAAAGCCGGGCTA 1042
||||||| |||||||||||||||||||||||||| ||||| ||||| |||| ||| ||||
Sbjct 995 CTACTCCTAAGGAGATTTGTAAATGGCTTGACAAATTCGTTATTGGTCAAACCCGTGCTA 1054
Query 1043 AAAAGGTGCTCTCTGTCGCTGTGTATAATCATTACAAGAGAATTTATCATACCTCTATGA 1102
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1055 AAAAGGTGCTCTCTGTCGCTGTGTATAACCATTACAAGAGAATTTATCATACCTCTATGA 1114
Query 1103 AGAAAGGGTCAGCAGCACAACCAATTGATGATGACGATAATGTAGAATTAGATAAGAGCA 1162
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AGAAAGGGTCAGCTGCACAACCAATTGATGATGACGATAATGTAGAATTAGATAAGAGCA 1174
Query 1163 ATGTTCTCTTGATGGGGCCTACTGGCTCTGGGAAGACATTACTCGCAAAGACTTTGGCGA 1222
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1175 ATGTCCTCTTGATGGGGCCTACTGGCTCTGGGAAGACATTACTCGCAAAGACTTTAGCTC 1234
Query 1223 GGCTTGTAAATGTTCCTTTTGTCATTGCTGATGCAACTACACTGACTCAGGCTGGTTATG 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 GGCTTGTAAATGTTCCTTTTGTCATTGCTGATGCAACTACACTGACTCAGGCTGGTTATG 1294
Query 1283 TGGGTGACGATGTTGAATCAATCCTTCATAAGCTACTAACGGTCGCTGAGTTCAACGTGC 1342
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1295 TTGGTGATGATGTTGAATCAATCCTTCATAAGCTACTAACGGTCGCTGAGTTTAACGTGC 1354
Query 1343 AAGCAGCACAACAGGGAATAGTCTATATTGATGAAGTTGATAAGATAACTAAGAAGGCTG 1402
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1355 AAGCAGCACAACAGGGAATAGTCTACATTGATGAAGTTGATAAGATAACGAAGAAGGCTG 1414
Query 1403 AGAGTTTAAACATTAGCCGGGATGTTTCTGGGGAAGGTGTTCAACAGGCACTTTTGAAAT 1462
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1415 AGAGTTTAAACATTAGCCGGGATGTTTCTGGGGAAGGTGTTCAACAAGCGCTTTTGAAAT 1474
Query 1463 TACTGGAAGGCACTATTGTAAATGTTCCAGGGAAAGGTGCAAGAAAGCATCCGCGGGGTG 1522
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1475 TACTGGAAGGCACTATCGTAAATGTTCCAGGGAAAGGTGCAAGGAAGCATCCGCGGGGTG 1534
Query 1523 ACCATATACAGATAGACACAAAAGATATCCTATTTATCTGTGGAGGAGCATTTGTTGACC 1582
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1535 ACCATATACAGATAGACACAAAAGATATCCTCTTTATCTGTGGAGGAGCATTTGTTGACC 1594
Query 1583 TTGAGAAGACCATTGTGGATAGACGACAAGACTCATCAATTGGTTTTGGAGCTCCTGTTC 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 TTGAGAAGACCATTGTGGATAGACGACAAGACTCATCAATTGGTTTTGGAGCTCCTGTTC 1654
Query 1643 GTGCCAACATGGCTACCAGTGGAGTGACCAGTGGTGCAATAACTTCATCTTTGCTAGAAT 1702
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1655 GTGCCAACATGGCTACCAGTGGAGTGACAAGTGGTGCAATAACTTCATCTTTGCTAGAAT 1714
Query 1703 CGGTTGAGAGTGCCGATCTGACAGCATATGGCCTTATACCGGAGTTTGTAGGACGCTTTC 1762
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1715 CGGTTGAGAGTGCCGATCTGACAGCATATGGTCTTATACCAGAGTTTGTAGGACGCTTTC 1774
Query 1763 CCATATTAGTTAGTTTGTCAGCTCTGACAGAGGACCAGCTCATTCGGGTGCTTGTAGAAC 1822
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1775 CCATATTAGTTAGTTTGTCAGCTCTGACAGAGGAGCAGCTCATTCGGGTGCTTGTAGAAC 1834
Query 1823 CCAAAAATGCTCTTGGGAAACAGTACAAGAAACTATTTAGCATGAACAACGT-AAAGCTG 1881
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1835 CCAAAAATGCTCTTGGGAAACAGTACAAGAAACTATTTAGCATGAACAACGTGAAA-CTG 1893
Query 1882 CATTTTACTGAGAAAGCGCTGGAGATAATATCCAAGCAAGCAATGGTGAAAAATACAGGT 1941
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1894 CATTTTACTGAGAAAGCGCTGGAGATAATATCCAAGCAAGCAATGGTGAAGAATACAGGT 1953
Query 1942 GCGAGGGGACTAAGAGCCTTACTTGAAAGCATTCTTACCGAAGCCATGTTTGAGATTCCA 2001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 GCGAGGGGACTAAGAGCCTTACTTGAAAGCATTCTTACCGAAGCCATGTTTGAGATTCCA 2013
Query 2002 GATGATAAAAAGGGAGATGAAAGAATCGATGCGGTTATAGTAGATGAGGAATCAACAAGC 2061
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2014 GATGATAAAAAGGGAGATGAAAGAATCGACGCGGTTATAGTAGATGAGGAATCAACAAGC 2073
Query 2062 TCAGAAGCGTCTCGTGGATGCACAGCAAAAATACTTAGAGGAGACGGTGCTTTCGAGCGT 2121
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 2074 TCAGAAGCTTCTCGTGGATGCACCGCAAAAATACTTAGAGGAGACGGGGCTTTTGAGCGT 2133
Query 2122 TACCTCAGCGAGAACAAGTCGAAAGATGCTACAGAACCAATGGTTGACGAAAGAGTAGGC 2181
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2134 TACCTCAGCGAGAACAAGTCGAAAGATGCTACAGAACCGATGGTTGACGAAAGAGTAGGC 2193
Query 2182 TCGGCGAAAGCAATGAGATTGTAAAGAGAATGAGAGAAGAAGGGTTTTAACATGAAGAGt 2241
||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2194 TCGGCGAGAGCAATGAGATTGTAAAGAGAATGAGAAAAGAAGGGTCTTAACATGAAGAGT 2253
Query 2242 tttttttttATTATTTGTAAAGAACGATAGCATTCATAAAAGTGCAAGAGGAATTTATCC 2301
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2254 TTTTTTTTGATTATTTGTAAAGAACAATAGCATTCATAAAAGTGCAAGAGGAATT-ATCC 2312
Query 2302 ACTCTGTACAATAAAATGTTAGCTTACAGATTCGAAAGCTGAATTGTT-GTTACATAGAA 2360
||| ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2313 ACTTTGTACAATAAATTGTTAGCTTACAGATTCGAAAGTTGAATTGTTTGTTACATAGAA 2372
Query 2361 AGAAAAGAATAGGATCGGTGTAAAAACAACATTTTTGTAACTCTCTCTGTTTCAAAATAA 2420
||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2373 AGAAA-GAATAGGATCG-TGTAAAAACAACATTT--GTAACTCTCTCTGTTTCAAAATAA 2428
Query 2421 CAAAAGTGTTATTAGTTTGTC 2441
||| ||||||||||||||||
Sbjct 2429 CAA--GTGTTATTAGTTTGTC 2447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91987941675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5