BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G33400.1

Length=2540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915718 jgi|Araly1|915718|Al_scaffold_0008_469                     455    8e-127
  Ahg915719 jgi|Araly1|915719|Al_scaffold_0008_470                     366    4e-100


> Ahg915718 jgi|Araly1|915718|Al_scaffold_0008_469
Length=288

 Score =  455 bits (246),  Expect = 8e-127
 Identities = 276/290 (95%), Gaps = 4/290 (1%)
 Strand=Plus/Plus

Query  2146  GCGTGCTATTTAGCTGGGGAACTGGTGGATGCAAGAAAGCATTGTGAAGCATCCATTAAG  2205
             ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  1     GCGTGCTATTTAGCTGGAGAACTGGTGGATGCAAGAAAGCATTGTGAAGCGTCCATTAAG  60

Query  2206  ATTCTGAAGAGGCTGTATGAGGATGAACACGTGGTGATTGGAAATGAAATGGTGAAGCTT  2265
             |||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  61    ATTCTGAAGAAGCTGTATGAGGATGAACATGTAGTGATTGGAAATGAAATGGTGAAGCTT  120

Query  2266  GCGTCGATTCAGCTTGCATCAGGTGATTC-CAGTGGAGCTTGGGACACTACAAAGAGATC  2324
             |||||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||
Sbjct  121   GCGTCGATTCAGCTTGCATCAGGTGA-TCGCAGTGGAGCTTGGGACACAACAAAGAG-TC  178

Query  2325  -GTCTCAGATATTCTCAAAGTATTACGGGTCACATGCTGAGACTCTCTTCTCTTATCTCC  2383
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179   TGTCTCAGATATTCTCAAAGTATTACGGGTCACATGCTGAGACTCTCTTCTCTTATCTCC  238

Query  2384  CATGTCTTAAGCAAGAAACTGCCAAAGCTGTGAATTTGTCAACTTCTTAA  2433
             ||||||||||||||||| | ||||||||| ||||||||||| ||||||||
Sbjct  239   CATGTCTTAAGCAAGAAGCCGCCAAAGCTATGAATTTGTCATCTTCTTAA  288


> Ahg915719 jgi|Araly1|915719|Al_scaffold_0008_470
Length=246

 Score =  366 bits (198),  Expect = 4e-100
 Identities = 224/236 (95%), Gaps = 4/236 (2%)
 Strand=Plus/Plus

Query  2200  ATTAAGATTCTGAAGAGGCTGTATGAGGATGAACACGTGGTGATTGGAAATGAAATGGTG  2259
             ||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct  13    ATTGAGATTCTGAAGAGGCTATATGAGGATGAACATGTAGTGATTGGAAATGAAATGGTG  72

Query  2260  AAGCTTGCGTCGATTCAGCTTGCATCAGGTGATTC-CAGTGGAGCTTGGGACACTACAAA  2318
             |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct  73    AAGCTTGCGTCGATTCAGCTTGCATCAGGTGA-TCGCAGTGGAGCTTGGGACACAACAAA  131

Query  2319  GAGATC-GTCTCAGATATTCTCAAAGTATTACGGGTCACATGCTGAGACTCTCTTCTCTT  2377
             ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132   GAG-TCTGTCTCAGATATTCTCAAAGTATTACGGGTCACATGCTGAGACTCTCTTCTCTT  190

Query  2378  ATCTCCCATGTCTTAAGCAAGAAACTGCCAAAGCTGTGAATTTGTCAACTTCTTAA  2433
             ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct  191   ATCTCCCATGTCTTAAGCAAGAAGCCGCCAAAGCTGTGAATTTGTCATCTTCTTAA  246



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 95758875930


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5