BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33420.1
Length=2501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922436 jgi|Araly1|922436|scaffold_103717.1 3290 0.0
> Ahg922436 jgi|Araly1|922436|scaffold_103717.1
Length=2134
Score = 3290 bits (1781), Expect = 0.0
Identities = 2022/2140 (94%), Gaps = 10/2140 (0%)
Strand=Plus/Plus
Query 209 AAAAAACCCTTGTTACACAGTCATGGCGGTGATGAACGGTGGTCGTGCGACGAAGCGAGC 268
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAAAAACCCTTGTT--ACGGTCATGGCGGTGATGAACGGTGGTCGTGCAACGAAGCGAGC 58
Query 269 GAGGCGTAGCAACAGAATCTCAGCTGATCTTTACGATTTCTCTACTTTCCCGACGGCGGA 328
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| |||
Sbjct 59 GAGGCGTAGCAACAGAATCTCAGCCGATCTCTACGATTTCACTACTTTCCCGGCGGAGGA 118
Query 329 GATCAACGGCGAGTCGACGACTTTGCCGCCGTTCCGAGACGGTGTGAGAACCTTCCTCGC 388
||| |||||||| ||||| || |||||||||||||| ||||| || ||||||||||||||
Sbjct 119 GATGAACGGCGACTCGACAACCTTGCCGCCGTTCCGCGACGGAGTTAGAACCTTCCTCGC 178
Query 389 GACCCACGCGCGTGTCACTTTCCCTCCTTCGACGCTCTTCTCGAGTTTGATGACGTGGCA 448
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 179 GACCCACGCGCGTGTCACTTTCCCTCCTTCGACGCTCTTCTCGAGTCTCATGACGTGGCA 238
Query 449 GATCATGCTTAGACCTGGAGATTCGACGGACGGTTCAGATCTCTCTTCTAAACTCGTCTC 508
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GATTATGCTCAGACCTGGAGATTCGACGGACGGTTCAGATCTCTCTTCTAAACTCGTCTC 298
Query 509 TCTCGACGTTGTGGAGGAGGATGTGACGAGATCCTCTAGATCTGTTTACTGTGAACACTG 568
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 299 TCTCGACGTTGTGGAGGAGGATGTGACTAGATCCTCTAGATCTGTTTACTGTGACCACTG 358
Query 569 CTGTGTCGTTGGTTGGAGTAGTCATCCAGTGTGTAGAAAGAGGTACCGCTTCATCATAAG 628
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 CCGAGTCGTTGGTTGGAGTAGTCATCCAGTGTGTAGAAAGAGGTACCACTTCATCATAAG 418
Query 629 GTCAGGAGGAGACACTAAGGCTTGCACGAGGTGTGGTAATACTCAGAATTTGTCTGAAGG 688
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 GTCAGGAGGGGACACTAAGGCTTGCACGAGGTGTGGTAATACTCAGAATTTGTCCGAAGG 478
Query 689 TAGCAATTGCAAATGGTGCAGCATGGCTTTAGACATTGAAAACTGGGTTTACTCTCAGCT 748
|||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 TAGCAATTGCAAGTGGTGTAGCATGGCTTTAGACATTGAAGACTGGGTTTACTCTCAGCT 538
Query 749 AGAGGATAACACTCACCTCCTTCACGGCGTTATCCACTCTAATGGCTACGCTCATCTAC- 807
|| || ||||||||||||||||| || ||||||||||| |||||||| |||||||| |
Sbjct 539 TGAAGACAACACTCACCTCCTTCATGGTGTTATCCACTCCAATGGCTATGCTCATCT-CT 597
Query 808 TGTGTCTTAATGGAAGAGAAGGTGGCTCTGGTTTTTTGACTGGTCGTGCCATTATGGACT 867
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGTCTCTTAATGGAAGAGAAGGTGGCTCTGGTTTTTTGACTGGTCGTGCCATTATGGACT 657
Query 868 TCTGGGATAGGCTTTGTTCCTCCCTTGCTGTTCGAAAAGCTAGTGTGATGGATGTGTCAA 927
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 658 TCTGGGACAGGCTTTGTTCCTCCCTTGCTGTTCGGAAGGCTAGTGTGATGGATGTGTCAA 717
Query 928 GGAAGTATGGGATGGACTACCGGTTGCTTCATGGGATTACTAGAGGGTGTTCGTGGTACA 987
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 GGAAGTATGGGATGGATTACCGGTTGCTTCATGGGATCACTAGAGGGTGTTCGTGGTACA 777
Query 988 GTGAGTGGGGTTATGAATTCAAATCGGGGAGCTATGCACTCACCAA-AGAAGCTTACCAG 1046
||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct 778 GTGAGTGGGGTTATGAATTCAAATCTGGGAGCTATGCACT-AACAAGAGAAGCTTACCAG 836
Query 1047 AGTGCAGTGGATACTTTATCTGCGATTCCTCTCTCTGAGTTTTTGTTCCAGGGGAGGAAA 1106
||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 837 AGTGCCGTGGATACTTTATCTGGGATACCTCTCTCTGAGTTTTTGTTCCAAGGGAGGAAA 896
Query 1107 CCAAGAACTCAGCTCCACTCCATTATTAGCTTCTACCAATCACTCTCGTGTTCAGAGCTT 1166
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 897 CCAAGAACTCAGCTCCACTCCATTATTGGCTTCTACCAATCACTCTCGTGTTTAGAGCTT 956
Query 1167 GTGACTGTCAAAGACCTCTTCTCCTTTCTCCTACAGATGATTCGTGAGAACAGTTCCAAA 1226
|||||||| |||||||||||||| ||||| |||||| |||||||||||||| || | |||
Sbjct 957 GTGACTGTGAAAGACCTCTTCTCATTTCTGCTACAGCTGATTCGTGAGAACCGTGCAAAA 1016
Query 1227 CCTGCATCTAAGTCGTCTGTACTGTGTGCTTGGTCTAAAAGTGATGTGGAACGTGTACAG 1286
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1017 CCTACATCTAAGTCGTCTGTACTGTGTGCTTGGTCTAAGAGTGATGTAGAACGTGTACAG 1076
Query 1287 CAAACCATGGTTAAGATACTGAAAGCTTCAGGACGCCCACAAGCCAACTGGGTTACAAGG 1346
||| |||||||||||||||||||| || ||||||| |||| |||||||||||||||||||
Sbjct 1077 CAAGCCATGGTTAAGATACTGAAAACTGCAGGACGTCCACGAGCCAACTGGGTTACAAGG 1136
Query 1347 TGGGCTCTCAAGAGGTCTATTTGCAAATCAGCCTCTCCACAACTGATTGATTACTGTCTC 1406
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1137 TGGGCTCTCAAGAGGTCTATTTGCAAAACAGCCTCTCCACAACTGATTGATTACTGTCTC 1196
Query 1407 AAGCATTTTGGAGGGGTTTTGGTGGATGATGGATCTCGAGTAGTCAGCTCACGTTGCAAT 1466
||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||
Sbjct 1197 AAGCATTTTGGAGGGGTTTTGGTGGATAATGGATCTCTAGTAGTCTGCTCCCGTTGCAAT 1256
Query 1467 CCTGGTTCAAACGACTTTGAGTACAGGCTTGAATCTGTCAACAATGTGCACCGCTTATCT 1526
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 CCTGGTTCAAACGACTTTGAGTACAGGCTTGAATCTGTTGACAATGTGCACCGCTTATCT 1316
Query 1527 AATCAAGATGTAAATAATGCATCAGTGGAGCATGTCAAACAGGATTTAAGATATTTGTAT 1586
|||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 1317 AATCAAGACGTAAATAATGCATCAGTGGAGCATGTCAAACGGGACTTAATATATTTGTAT 1376
Query 1587 GAAACTTTATTGCACCCACAAACCATGGCCGAGTTTAGGTCTCGAGCTACAAGAGAAAAA 1646
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 1377 GAAACTTTATTGCACCCACAAACCATGGCCGAGTTTAGGTATCGGGCTACAAGAGATAAA 1436
Query 1647 ATGATTGACGCAGCCACAAAAATACTGGACTGTAAGCATTTCATAAAAGATTACCTGTCT 1706
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1437 ATGATTGATGCAGCCACAAAAATACTGGACTGTAAGCATTTTATAAAAGATTACCTGTCT 1496
Query 1707 AGCACAGTGAACCCCGTTGCAATCAACCTCTGGTGCTGTGTTGAGCTTTCGGATGAACTC 1766
||||||| ||||||| ||||||||| |||||||||| ||| ||||||||||||| | ||
Sbjct 1497 AGCACAGCGAACCCCTTTGCAATCAGCCTCTGGTGCCATGTAGAGCTTTCGGATG-AGTC 1555
Query 1767 -AAAGAATCCCCAGCCCCTCCACCTGAACGGTTGGTTTTGCCATTGAACGCTACTGTTTC 1825
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1556 GAAAGAATGCCCAGCCCCTCCACCTGAACTGTTGGTTTTGCCATTGAACGCTACTGTTTC 1615
Query 1826 CGACCTTAAAATCGAAGCTGCTAAGGCTTTTCAGGAAGTGTATGCAATGTTCAAGAGGTT 1885
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TGACCTGAAAATCGAAGCTGCTAAGGCTTTTCAGGAAGTGTATGCAATGTTCAAGAGGTT 1675
Query 1886 TGAAGTTGAGGAGCTCCTAGGTTACGGTTCTATAGATGACTCTATTACCCTGAAATTTCT 1945
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1676 TGAAGTTGAGGAGCTCCTAGGTTACGGTTCTATAGATGACTTTATTACCCTGAAATTTCT 1735
Query 1946 AGTTGGCACAAACGGGGTCATACGGATTAAAGGGAGATGCTCAAAACACGGGCTCCTTAG 2005
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1736 AGTTGGCACAAATGGGGTCATACGGATTAAAGGGAGATGCTCAAAACACGGGCTCCTTCG 1795
Query 2006 ATACCGCATGGAGAGAGGGGTGGATAATTGGAAAGTTGATTGCAAGTGTGGCACAAAGGA 2065
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1796 ATACCGCATGGAGAGAGGGGTGGATAATTGGAAAGTTGATTGCAAGTGTGGCACCAAGGA 1855
Query 2066 TGATGATGGCGAGAGGATGTTGGCCTGTGATGGATGTGGTGTGTGGCACCACACTAGATG 2125
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1856 TGATGATGGTGAGAGGATGTTGGCCTGTGATGGGTGTGGTGTGTGGCACCACACTAGATG 1915
Query 2126 TATTGGGATCAATAACGCTGATGCCCTACCTTCCAAGTTCCTTTGTTTCAGATGCATTGA 2185
| ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1916 TGCTGGGATCAATAACTCCGATGCCCTACCTTCCAAGTTCCATTGTTTCAGATGCATTGA 1975
Query 2186 GTTGTACAGCAAGAAACCAAAGCAATCTAAAAA-AGAGCGTGGATCTAGTCAAGTGCCCA 2244
||||||||||||| ||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 1976 ATTGTACAGCAAGAGACCAAAGCAATCTGATAACA-AGCGTGGATCTAGTCAAGTGCCCA 2034
Query 2245 AAGCTGGCTTTGTTTGTAGAGGTGAGTCAGCTGCTATGGGCAGTGGATCTAATTTATCCG 2304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2035 AAGCTGGCTTTGTTTGTAGAGGTGAGTCAGCTGCAATGGGCAGTGGATCTAATTTATCCG 2094
Query 2305 TAACACTTAGAGTAGGCTGACTGTATTTATGATCTTTCTG 2344
|||||||||| |||||||||||||||||||||||||||||
Sbjct 2095 TAACACTTAGTGTAGGCTGACTGTATTTATGATCTTTCTG 2134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94273356375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5