BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33430.2
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313884 jgi|Araly1|313884|fgenesh1_pm.C_scaffold_1002664 1779 0.0
Ahg472435 jgi|Araly1|472435|fgenesh2_kg.1__2389__AT1G22015.1 141 1e-32
> Ahg313884 jgi|Araly1|313884|fgenesh1_pm.C_scaffold_1002664
Length=1188
Score = 1779 bits (963), Expect = 0.0
Identities = 1134/1213 (93%), Gaps = 26/1213 (2%)
Strand=Plus/Plus
Query 129 ATGAGGGCGAAAGCTGCTTCGGGGAAAGCCATAATAGTGCTTTGTCTAGCCAGCTTTCTT 188
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAGGGCAAAAGCTGCTTCAGGGAAAGCCATAATAGTGCTGTGTCTAGCCAGCTTTCTT 60
Query 189 GCAGGCTCACTGTTCATGAGTCGAACTTTGAGTCGCTCTTACATACCTGAAGAAGAAGAT 248
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 61 GCAGGCTCACTGTTCATGAGTCGAACTTTGAGTCGCTCTTACATACTTGAAGAAGAGGAT 120
Query 249 CACCATCTCACAAAGCATTTGTCCAAACATTTAGAGATTCAAAAGGACTGCGATGAACAT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACCATCTCACAAAGCATTTGTCCAAACATTTAGAGATTCAAAAGGACTGCGATGAACAT 180
Query 309 AAACGCAAATTGATAGAAAGCAAATCCAGAGACATAATAGGAGAAGTATCGAGAACTCAC 368
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 181 AAACGCAAATTGATAGAAAGCAAATCCAGAGACATATTAGGAGAAGTATCGAAAACACAC 240
Query 369 CAAGCAGTAAAATCATTGGAGAGAACAATGTCAACATTGGAGATGGAGTTAGCAGCAGCA 428
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CAAGCAGTAAAATCATTGGAGAGAACAATGTCAACGCTGGAGATGGAGTTAGCAGCAGCA 300
Query 429 CGTACCAGCGATAGAAGCAGTGAGTTCTGGAGCGAACGGTCGGCGAAAAACCAGAGCCGT 488
|||| |||||| |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 301 CGTATCAGCGACAGAAGCAGCGATTTCTGGAGCGAACGGTCGGCGAAAAACCAGAGTCGT 360
Query 489 CTGCAGAAAGTGTTTGCAGTGATAGGCATTAACACAGCATTCAGCAGCAAGAAAAGACGT 548
|||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||
Sbjct 361 CTGCAGAAAGTGTTTGCAGTAATAGGCATCAACACAGCATTCAGTAGTAAGAAAAGACGA 420
Query 549 GACTCGGTGAGACAAACGTGGATGCCAACAGGAGAAAAGCTAAAGAAAATCGAGAAAGAG 608
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 421 GACTCGGTGAGACAAACATGGATGCCAACAGGCGAAAAGCTAAAGAAAATCGAAAAAGAG 480
Query 609 AAAGGGATTGTTGTAAGAAAGTTTGGATTTTTATTTGACAGGTTTGTGATAGGACACAGT 668
||||||| | | | || | | | |||||||||||||||||||||
Sbjct 481 AAAGGGA----T-T------G-TT-G---------T-A-AGGTTTGTGATAGGACACAGT 516
Query 669 GCAACACCAGGAGGAGTATTAGATAAAGCCATAGATGAAGAAGATTCAGAGCATAAAGAT 728
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 517 GCAACACCAGGAGGAGTATTAGACAAAGCCATAGATGAAGAAGATTCAGAGCATAAAGAT 576
Query 729 TTCTTAAGACTAAAACACATTGAAGGATATCACCAACTCTCGACAAAGACAAGACTGTAC 788
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 577 TTCTTGAGACTAAAACACATTGAAGGATATCACCAACTCTCAACCAAGACAAGACTCTAC 636
Query 789 TTCTCAACAGCAACTGCAATGTATGACGCAGAGTTCTACGTGAAAGTGGATGATGATGTT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TTCTCAACAGCAACTGCAATGTATGACGCAGAGTTCTACGTGAAAGTGGATGATGATGTT 696
Query 849 CATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATT 908
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CATGTCAATTTGGGAATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATT 756
Query 909 TACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAAGGAGTGAAGTACCACGAG 968
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 757 TACATTGGTTGCATGAAGTCTGGTCCTGTTCTTTCACAAAAGGGAGTGAAGTATCATGAG 816
Query 969 CCAGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATACTTTAGGCATGCAACAGGTCAA 1028
|||||||||||||||||||||||||| |||||||| |||||||||||||| || || ||
Sbjct 817 CCAGAGTTTTGGAAATTTGGAGAAGAGGGTAACAAGTACTTTAGGCATGCGACTGGACAG 876
Query 1029 ATTTACGCAATCTCTAAAGACTTAGCTACATATATCTCCACTAACCAAGGAATACTACAC 1088
||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 877 ATTTACGCAATCTCTAAGGACTTAGCTGCATATATCTCCACTAACCAGGGAATACTACAC 936
Query 1089 CGGTACGCGAACGAGGATGTGTCGTTAGGAGCATGGATGTTAGGGTTAGAAGTGGAGCAT 1148
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CGGTATGCGAACGAGGATGTGTCGTTAGGAGCATGGATGTTAGGGTTAGAAGTGGAGCAT 996
Query 1149 GTGGACGAGAGGTCAATGTGTTGTGGAACTCCACCTGATTGTCAATGGAAAGCACAAGCT 1208
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 997 GTGGACGAGAGGTCAATGTGTTGTGGAACTCCACCGGATTGTCAATGGAAGGCACAAGCC 1056
Query 1209 GGTAACGTATGTGCTGCGTCGTTCGATTGGTCTTGCAGCGGGATTTGTAAGTCCGTTGAC 1268
|| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1057 GGGAACGTGTGCGCTGCGTCGTTCGATTGGTCTTGCAGCGGGATTTGTAAGTCTGTTGAT 1116
Query 1269 CGGATG-GCTCGTGTGCATCGAGCTTGTGCTGAAGGAGACACTCCTCTAGCTAATTTTCG 1327
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CGGATGAGC-CGTGTACATCGAGCTTGTGCTGAAGGAGACACTCCTCTAGCTAATTTTCG 1175
Query 1328 CTTCTTCGTCTGA 1340
|||||||||||||
Sbjct 1176 CTTCTTCGTCTGA 1188
> Ahg472435 jgi|Araly1|472435|fgenesh2_kg.1__2389__AT1G22015.1
Length=1342
Score = 141 bits (76), Expect = 1e-32
Identities = 325/440 (74%), Gaps = 38/440 (9%)
Strand=Plus/Plus
Query 655 TGATAGGACACAGTGCAACACC-AGGAGGAGTATTAGATAAAGCCATAGATGAAGAAGAT 713
|||| ||||||||| |||| || | || | |||| ||||| | || ||| |||||||
Sbjct 571 TGATTGGACACAGTTCAACGCCAAACAGTA-TATTGGATAAGGAAATTGATTCAGAAGAT 629
Query 714 --TCAGAGCATAAAGATTTCTTAAGACTAAAACACATTGAAGGATATCACCAA-CTCTC- 769
||| | | ||||||||||| || || | || | ||||||||| | ||| || ||
Sbjct 630 GCTCA-A-TACAAAGATTTCTTTAGGCTGGATCATGTCGAAGGATATTA-CAATCTGTCT 686
Query 770 GACAAAGA-CAAGA-CTGTACTTCTCAACAGCAACTGCAATGTATGACGCAGAGTTCTAC 827
| |||| | ||| | || | ||| || | ||| ||||| | || || ||||| ||
Sbjct 687 G-CAAAAACCAAAAGCT-T-CTTTTCTAGTGCAGTTGCAAAATGGGATGCTGAGTTTTAT 743
Query 828 GTGAAAG-TGGATGATGATGTTCATGTCAAT-TTAGGTATGCTTG-TTACAACACTT-GC 883
|| ||| | |||||||||||||| |||||| || |||| ||||| || | ||| || ||
Sbjct 744 GT-CAAGATTGATGATGATGTTCACGTCAATCTT-GGTACGCTTGCTT-CCACA-TTAGC 799
Query 884 GAGATATCAATC-AAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTT 942
|| | | || ||| |||||| | || |||||||| ||||| || ||||||| || ||
Sbjct 800 TAGGCACCGTTCTAAG-CCAAGGGTCTATATTGGATGTATGAAATCCGGTCCTG-TCCTT 857
Query 943 CAC-AAAAAGGA--GTGAAGTACCACGAGCCAGAGTTTTGGAAATTTGGAGAAGAAGGTA 999
|| ||||| || | ||||||| || || ||||||||||||||||||||||||||||
Sbjct 858 -ACTAAAAA-GACGGCCAAGTACCGTGAACCCGAGTTTTGGAAATTTGGAGAAGAAGGTA 915
Query 1000 ACAAATACTTTAGG-CATGCAACAGGTCAAATTTACGCAATCTCTAAAG-A-CTTAGCTA 1056
||||||| ||| | ||||| || || || ||||| || || || |||| | ||| || |
Sbjct 916 ACAAATA-TTTCCGACATGCTACGGGACAGATTTATGCCATATC-AAAGGATCTT-GCCA 972
Query 1057 CATATATCTCCA-CTAACCA 1075
|||| || |||| | |||||
Sbjct 973 CATACATATCCAAC-AACCA 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5