BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33440.1
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922438 jgi|Araly1|922438|scaffold_103719.1 2880 0.0
> Ahg922438 jgi|Araly1|922438|scaffold_103719.1
Length=1845
Score = 2880 bits (1559), Expect = 0.0
Identities = 1760/1857 (95%), Gaps = 14/1857 (1%)
Strand=Plus/Plus
Query 61 CAAGaaaaaaaGAAAGAGCTATGGATGTTCATGATCTATCTGAAGAAGCCAAAAGAGGAG 120
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 1 CAAGAAAAATAGAAAGAGCTATGGATGTTCATGATCTATCTGAAGAAGCTAAAAGA-G-G 58
Query 121 TAATACACACGTCGGAGGAATCATTGGACGATCTTTGTGTTGATTTTCGAGGTCGGCCAT 180
| |||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct 59 -ACTACACATGTCGGAGGAATCATCGGACGATATTTGTGTTGATTTTCGAGGTCGACCAT 117
Query 181 GCAGGCCAAGCAAGCATGGTGGTACAAGAGCTGCCCTCTTTGTTCTAGGCTTCCAAGCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCAGGCCAAGCAAGCATGGTGGTACAAGAGCTGCCCTCTTTGTTCTAGGCTTCCAAGCTT 177
Query 241 TCGAGATGATGGCGATCGCAGCTGTTGGAAACAACTTGATCACATACGTATTCAATGAGA 300
||||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct 178 TCGAGATGATGGCTATCGCAGCCGTTGGCAACAACTTGATCACATATGTGTTCAATGAGA 237
Query 301 TGCATTTCCCTTTGTCAAAATCCGCAAACCTCGTTACTAACTTCATAGGAACGGTGTTTC 360
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 TGCATTTTCCTTTGTCGAAATCCGCAAACCTCGTGACTAACTTCATAGGAACGGTGTTTC 297
Query 361 TCCTCTCGCTTCTTGGTGGCTTCCTCTCTGATTCATACCTTGGAAGCTTTCGTACCATGC 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTCTCTCGCTTCTTGGTGGCTTCCTCTCTGATTCATACCTTGGAAGCTTTCGTACCATGC 357
Query 421 TCGTTTTT-GGCGTCATCGAAATCTCTGGTTTCATATTATTGTCAGTCCAAGCTCATCTC 479
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TC-TTTTTCGGCGTCATCGAAATCTCTGGTTTCATATTATTGTCAGTCCAAGCTCATCTC 416
Query 480 CCAGAGCTAAGACCACCAGAATGCAACATGAAGAGCACCACAATACATTGCGTAGAGGCA 539
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 417 CCAGAGCTGAGACCACCAGAATGCAACATGAAGAG---CACAATACATTGCGTAGAGGCA 473
Query 540 AATGGTTACAAGGCAGCCACTCTCTACACCGCACTCTGTTTAGTGGCCTTAGGGAGCGGC 599
|||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 474 AATGGTTACAAGGCGGTCACTCTCTACGCAGCACTCTGTTTGGTGGCCTTAGGGAGCGGC 533
Query 600 TGCCTCAAACCGAACATCATCTCTCACGGTGCAAACCAGTTTCAAAGGAAAGATTTGAGG 659
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 534 TGCCTTAAACCGAACATTATCTCTCACGGTGCAAACCAGTTTCAAAGGAAGGATTTGAGG 593
Query 660 AAGCTCTCGAGTTTCTTCAATGCGGCTTACTTCGCCTTCTCAATGGGTCAGCTTATTGCA 719
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 AAGCTATCTAGTTTCTTCAATGCTGCTTACTTCGCCTTCTCAATGGGTCAGCTTATTGCA 653
Query 720 CTCACACTCTTAGTTTGGGTGCAAACACATTCTGGTATGGACGTTGGTTTTGGTGTCTCC 779
|| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 654 CTTACACTCTTAGTTTGGGTGCAAACGCATTCCGGCATGGACGTTGGTTTTGGTGTCTCC 713
Query 780 GCGGCTGTTATGGCCGCGGGGATGATCAGCCTTGTCGCTGGAACTAGCTTTTATAGGAAT 839
|||||||||||||||||||||||||| || || || |||||||||| |||||||||||||
Sbjct 714 GCGGCTGTTATGGCCGCGGGGATGATTAGTCTCGTTGCTGGAACTAACTTTTATAGGAAT 773
Query 840 AAACCGCCTAGTGGTAGCATCTTCACACCAATTGCTCAGGTCTTCGTAGCCGCGATCACT 899
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AAACCGCCTCGTGGTAGCATCTTCACACCAATTGCTCAGGTCTTCGTAGCCGCGATCACT 833
Query 900 AAACGAAAACAGATTTGCCCATCAAACCCAAACATGGTTCACCAACCTTCAACGGATCTT 959
|||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||
Sbjct 834 AAACGAAAACAGATTTGCCCGTCAAACCCGAACATGCTTCAGCAACCTTCAACGGATCTA 893
Query 960 GTTCGTGTCAAACCTCTCCTCCATTCTAATAAATTCAGGTTTCTTGACAAGGCTTGCATC 1019
|||||||||||||| || ||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 894 GTTCGTGTCAAACCACTTCTCCATTCTAACAAATTCAAGTTTCTTGACAAAGCTTGCATC 953
Query 1020 AAGACGCAAGGCAAGGCAATGGAGAGTCCATGGAGACTCTGCACAATCGAACAAGTCCAT 1079
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AAGACGCAAGGCAAAGCAATGGAGAGTCCATGGAGACTCTGCACAATCGAACAAGTCCAT 1013
Query 1080 CAAGTCAAGA-TATTGTTATCAGTCATACCGATATTCGCGTGTACTATCATCTTCAACAC 1138
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CAAGTCAAGATTCTT-TTATCAGTCATACCGATATTCGCGTGTACTATCATCTTCAACAC 1072
Query 1139 CATCTTAGCTCAGCTTCAAACTTTCTCTGTTCAGCAAGGAAGTTCCATGAACACACACAT 1198
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1073 CATCTTAGCTCAGCTTCAAACTTTCTCTGTTCAGCAAGGAAGTTCTATGAACACACATAT 1132
Query 1199 TACAAAAACTTTCCAAATTCCACCAGCTTCTCTTCAAGCCATTCCTTACATCATTCTCAT 1258
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1133 TACAAAAACTTTCCAAATACCACCGGCTTCTCTTCAAGCCATTCCTTACATCATTCTCAT 1192
Query 1259 CTTCTTTGTGCCTCTCTACGAGACGTTCTTCGTCCCACTCGCTAGAAAACTCACGGGAAA 1318
||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||
Sbjct 1193 CTTCTTTGTGCCTCTCTACGAAACGTTCTTCGTCCCACTCGCTAGAAAATTCGCGGGAAA 1252
Query 1319 CGATTCTGGAATCTCTCCTCTTCAGAGAATTGGCACTGGACTGTTCTTAGCAACTTTCTC 1378
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TGATTCCGGAATCTCTCCTCTTCAGAGAATTGGCACTGGACTGTTCTTAGCAACTTTCTC 1312
Query 1379 GATGGTTGCAGCCGCTTTAGTGGAGAAGAAGAGACGAGAATCGTTCTTGGAACAGAACGT 1438
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1313 AATGGTTGCAGCTGCTTTAGTGGAAAAGAAGAGACGAGAATCGTTCTTGGAACAGAATGC 1372
Query 1439 AATGCTCTCGATCTTTTGGATCGCGCCGCAGTTTCTGATATTTGGTTTATCAGAGATGTT 1498
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1373 AACACTCTCAATCTTTTGGATCGCGCCGCAGTTTCTGATATTCGGTTTATCAGAGATGTT 1432
Query 1499 TACAGCCGTTGGATTAGTGGAGtttttttACAAACAGTCTTCACAGAGTATGCAATCTTT 1558
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1433 TACAGCTGTTGGATTAGTGGAGTTTTTTTACAAACAGTCTTCACAGAGTATGCAGTCTTT 1492
Query 1559 TCTCACAGCAATGACATACTGTTCTTACTCTTTCGGGTTTTATCTTAGCTCTGTTCTTGT 1618
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1493 TCTCACAGCAATGACTTACTGTTCTTACTCTTTCGGGTTCTATCTTAGCTCTGTTCTTGT 1552
Query 1619 CTCGACCGTGAATAGAGTTACTTCTAGTAATGGTTCCGGGACCAAAGAAGGTTGGTTAGG 1678
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1553 CTCGACCGTGAACAGAGTTACTTCTAGTAATGGTTCCGGGACTAAAGAAGGTTGGTTAGG 1612
Query 1679 CGATAATGACCTTAACAAAGATAGATTAGATCACTTTTACTGGCTTTTAGCTTCATTGAG 1738
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1613 CGATAACGACCTTAACAAAGATAGATTAGATCACTTTTACTGGCTCTTAGCTTCATTGAG 1672
Query 1739 TTTCATCAACTTCTTTAATTATCTTTTCTGGTCAAGATGGTATTCGTGTGATCCGTCCGC 1798
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1673 TTTCATCAACTTCTTTAACTATCTTTTCTGGTCAAGATGGTATTCGTGTGATCCATCCGA 1732
Query 1799 GACACATCATAGCGCCGAAGTCAATAGCTTGGAGGCTTTAGAAAATGGCGAAATCAAGGA 1858
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1733 GACACATCATAGCGCCGAAGTCAATAGCTTGGAGGATTTAGAAAATGGCGAAAACAAGGA 1792
Query 1859 TTCCACGACGGAGAAGCCTAGAATTTGACTAATTAAGTATGGTAGACCATCTTGTTG 1915
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 1793 TTCCACGACGGAGAAGCCTAGAATTTGACTAA----GTATGTTAGATCATCTTGTTG 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83151004835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5