BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33470.1
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473518 jgi|Araly1|473518|fgenesh2_kg.1__3472__AT1G33470.1 3062 0.0
> Ahg473518 jgi|Araly1|473518|fgenesh2_kg.1__3472__AT1G33470.1
Length=1967
Score = 3062 bits (1658), Expect = 0.0
Identities = 1872/1967 (95%), Gaps = 48/1967 (2%)
Strand=Plus/Plus
Query 16 cctccttcttc-tctctctctcgtttctcaactaccgtctctctgcttcttctGTTCCCA 74
|||||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1 CCTCCTTC-TCTTCTCTCTCTCGTCTCTCAACTACCGTTTCTCTGCTTCTTCTGTTCCCA 59
Query 75 AAACCGGAAACTTTACTTCGTGGAATTTTCCCTTGTTTCTGAAATGGAAGACACAACATT 134
||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 60 AAATCGGAAACTTTACTTCGTTGAATTTTCCTTTGTTTCTGAAATGGAAGACACAACATT 119
Query 135 TACCAAAGTGTTCGTTGGAGGATTAGCTTGGGAAACACACAAAGTCTCTCTCAGGAATTA 194
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CACCAAAGTGTTCGTTGGAGGATTAGCTTGGGAAACACACAAAATCTCTCTCAGGAATTA 179
Query 195 CTTTGAACAGTTTGGTGACATTGTTGAAGCTGTCGTTATCACTGATAAATCTAGTGGTAG 254
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTTGAACAGTTTGGGGACATTGTTGAAGCTGTCGTTATCACTGATAAATCTAGTGGTAG 239
Query 255 ATCTAAAGGCTATGGCTTTGTTACTTTTTGTGATCCGGAAGCAGCTCAGAAAGCTTGTGT 314
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCTAAAGGCTACGGCTTTGTTACTTTTTGTGATCCGGAAGCAGCTCAGAAAGCTTGTGT 299
Query 315 AGATCCAGCTCCTGTTATTGATGGAAGAAGAGCTAATTGTAATCTTGCTGCTTTTGGTGT 374
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AGATCCAGCTCCTGTTATTGATGGGAGAAGAGCTAATTGTAATCTTGCTGCTTTTGGTGT 359
Query 375 TCAGAGATCCAAACCTTCTTCTCCTATTCATGGACATGTAGGAGGAAGAGGC---ATGAA 431
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 360 TCAGAGATCCAAACCTTCTTCTCCTATTCATGGACATGCAGGAGGAAGAGGCGGTATGAA 419
Query 432 GGTGACTAGCCCTTTCAAGACACACTTTGGGACCGCGGCTACTGCTATTCCTTCCCCACT 491
|||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 420 GGTGACTAGCCCATTCAAGACACACTTTGGGGCCGCGGCTGCTGCTATTCCTTCCCCACT 479
Query 492 TCCATTCTCCCACTACACACTTCCTTACACTAATCCTTTTGGGTTCTCTTCATACTCAAT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCATTCTCCCACTACACACTTCCTTACACTAATCCTTTTGGGTTCTCTTCATACTCAAT 539
Query 552 GGATTACAATTACCCCACGCAGAGCTATTACAATGTTTATGGAGGGGCAACTGCTCAGCA 611
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GGATTACAATTACCCCACGCAGAGCTACTACAATGTTTATGGAGGGGCAACTGCTCAGCA 599
Query 612 TCCAATGTATGGAAGCGGACCAATGACTGGTGTAGCAGCAGCACCAGCAGCAGGGTTCTA 671
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 TCCAATGTATGGTAGCGGACCAATGACTGGTGTAGCAGCAGCAACAGCAGCAGGGTTCTA 659
Query 672 CCCATATCTCCAGTTTGCTGAAGGAAATGGACCTGTCACTGGTTATGCTCCCCTCCACTA 731
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 660 CCCATATCTCCAGTTTGCTGAAGGAAATGGACCTGTCACTGGTTATGCTCCTCTCCATTA 719
Query 732 CCCCAACCACATGTTTCACTATTCTGCTCCCGGGGGAAACTACCCGCATCACAATGGTTC 791
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 CCCCAACCACATGTTTCATTATTCTGCTACCGGGGGAAACTACCCGCATCACAATGGTTC 779
Query 792 ACCAGTGTCTCTTGCACCTTCACCAGTCATACCATCAGTTTGCTTTGCAGTTCCACAGGC 851
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 ACCAGTGTCTCTTGCACCTTCACCGGTCATACCATCAGTTTGCTTTGCAGTTCCACAGGC 839
Query 852 TTGACCATGAAGGCTCGTGGTTCA--TA--G-TTCCATGATGCTATGTAGGGGACCAATT 906
|||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct 840 TTGACCATGAAGGCTCATGGTTCAACTCTTGATTCCATGATGCTATGTAGGGGACCAATT 899
Query 907 CATTTAAATCCTTAAGGCAAAGCTTTGTTTACTACTTTCATCCACATGCCTCTGAAGTTT 966
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 CATTTAAATCCTTAAGGCAA-GCTTTGTTTACTACTTTCATCCACATGCCTCTGAAGTTC 958
Query 967 CACAAGACCTGTGGCCTAACCATGGTTGCCCTTTTCCCTTTATGCTTCTAACCCATTAGA 1026
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 CACAAGACCTGTGGCCTAACCATGGTTGCCCTTTCCCCTTTATGCTTCTAACCCATTAGA 1018
Query 1027 CAAAGAAGCCCATAATTTGGAGTTTGGGCGTCTTTGCAAGTTCTAGTTAAGTCTCACATA 1086
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 CAAAGAT-CCCAGAATTTGGAGTTTGGGAGTCTTTGCAAGTTCTAGTTAAGTCTCACATA 1077
Query 1087 GGGGTTTAACTAGGACCATCTTCATACACATTACTCATCTTTTCATTTTATTCATTGCAT 1146
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGGGTTTAACTTGGACCATCTTCATACACATTACTCATCTTTTCATTTTATTCATTGCAT 1137
Query 1147 TACCTGCTTTCTGAACGAAGGTTTCGTTCAAGATAGCTTGTTCGAGCTGTAGAAGTAAAC 1206
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1138 TACATGCTTTCTGAACGAAGGTTTCGTTCAAGATAGCCTGTTCGAGCTGTAGAAGTAAA- 1196
Query 1207 AGTTACCGTCTTTTGCACAGTGCCTCGC-AAAGGCAAGCAATTTTGTAGAAAAACTTAAA 1265
|| | | |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1197 --TT---G-C------ACAGTGCC-CGCGAAAGGCAAGCAATTTTGTAGAAAAACTTAAA 1243
Query 1266 AA-CTTAGGATTGGCTGATCAACAAGAAAGGAAATAAGGATTTCCCGGGAAAGGCACAAG 1324
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 AAGCTTAGGATTGGCTGATCAACAAGAAAGGAAATAAGGATTTCCCGGGAAAGGCACAAG 1303
Query 1325 AAGTGAATTGCCACCACCTGGAAGTGTT-GAAGTAGTGTGTGCAAAGGTGTGCACACTAC 1383
||||||| |||||||||||||||||||| |||||||||||||||| ||||| | ||||||
Sbjct 1304 AAGTGAAATGCCACCACCTGGAAGTGTTTGAAGTAGTGTGTGCAATGGTGTACCCACTAC 1363
Query 1384 TTCACGCTATATCCATTTTAATGTGCAGTCTTAGGATTATTAGATCTAGGACCATGTTGT 1443
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TTCGCGCTATATCCATTTTAATGTGCAGTCTTAGGATTATTAGATCTAGGACCATGTTGT 1423
Query 1444 TACACATTGTCTTGTAGTAGAACGCTAGAACATAAACTTCCTTTGAGGATAAAGGAATTG 1503
||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1424 TACACATTGTCTTATCGTAGAACGCTAGAACATAAACTTCTTTTGAGGATAAAGGAATTG 1483
Query 1504 CTAACACATGTATATTCTCGGTGGCTAAGCTTTGGAGTTATAGCCACACTTGAGCTAACT 1563
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 CTAACCCATGTATATTCTCGGTGGCTAAGCTTTGGAGTTATAGCCACACTTGAGCTAACT 1543
Query 1564 T-AGATTAAGATCATTTTTAAGATTCAAAA-TTTAGATTGCTCATCATATCTTGAACCAA 1621
| |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 1544 TTAGATTAAGATCATTTT-ACGATTCAAAAATTTAGATTGCTCATCATATCTTGAACCAA 1602
Query 1622 CCCCACTAATGGATTGTGGGGTTCTT-GCATTTGCATGTATTTTTGCCTCTTGGGAGATA 1680
|||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||||
Sbjct 1603 CCCCACTAATGGATTGTGGGGT-CTTTGCATTTGCATGT-TTTT-GCCTCTTGGGAGATA 1659
Query 1681 TTTTGGTTCCC-TTTAGGTTCTTCTCATAACAATCAACCAAACCAGTTGACCAACCATGG 1739
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1660 TTTTGGTTCCCATTTAGGTTCTTCTCATAACA-TCAACCAAACCAGTTGACCAACCATGG 1718
Query 1740 TTAGGAATTTCAGGTGAGAGGTATTCATCACCTCTTTATCTCTCTTTTGTACTTCTTTCC 1799
|||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 1719 TTAGGA-TTTCAGGTGAGAGGTTTTCATCACCTCTTTATCTCTCTTTT--ACT-CTTTCC 1774
Query 1800 TCTATTTCTTCAA-GACTAAAAACTCTCTTTTTATGTAATTTGTTGTTATATCTTGTAAG 1858
||| ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1775 TCTGTTTCTTCAAAGACTAAAAACTCTCTTTT-ATGTA-TTTGTTGTTAT--CTTGTAAG 1830
Query 1859 CTGTGTGTTTCTGATTCTATGTAAGAAAACTAAAAGCTTTCAGTTTCCATCCTCGGTGGT 1918
|||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||
Sbjct 1831 CTGTGTGTTTCTGATTCTATGTAAGAAAAC-AAAACCTTTCATTTTCCATCCGCGGTGGT 1889
Query 1919 TGGAAAATGAAACTGTGATTGCAATATTTTACTTTGATCTGATATAT 1965
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 TGGAAAATGAAACTGTGATTGCAATATTTTACTTTGATCTGATATAT 1936
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1983 TTATGACAATGTCTCCTACTATATGAATCCC 2013
|||||||||||||||||||||||||||||||
Sbjct 1937 TTATGACAATGTCTCCTACTATATGAATCCC 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76066219265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5