BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33475.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336421 jgi|Araly1|336421|fgenesh1_pg.C_scaffold_1002986 1044 0.0
Ahg489864 jgi|Araly1|489864|fgenesh2_kg.6__2998__AT4G10170.1 244 7e-64
> Ahg336421 jgi|Araly1|336421|fgenesh1_pg.C_scaffold_1002986
Length=1449
Score = 1044 bits (565), Expect = 0.0
Identities = 692/753 (92%), Gaps = 9/753 (1%)
Strand=Plus/Plus
Query 81 GTTCACTACTGTTGTGTCTCAAGAGACAATCAGATTATGTACGCTTACAACAATGCCGGA 140
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 700 GTTCACTACTGTTGTGTCTCAAGAGACAATCAGATTCTGTACTCTTACAACAATGCCGGA 759
Query 141 GACCACCGCAACAACGAGAGTCTTGCAGCGTTATGCTTGGAAAAGACTCCACCTTTTCAC 200
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 760 GACCACCGCAACAACGAGAGTCTCGCAGCGTTATGCTTGGAAAAGACTCCATCTTTTCAC 819
Query 201 AAGTGGTACTTCGAAACGAGGGGTAAGAAGACTTTTGGATTCTTGATGAAAGATGACTTC 260
||||||||||||||||||| | |||| ||||||||| ||||||||| |||||| |||
Sbjct 820 AAGTGGTACTTCGAAACGATAAGCAAGAGGACTTTTGGGTTCTTGATGGAAGATGGGTTC 879
Query 261 GTTTATTTCGCCATTGTTGATGATGTTTTCAAGAAATCTAGCGTTCTTGATTTTCTTGAA 320
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 880 GTTTATTTCACCATTGTTGATGATGTTTTCAAGAGATCTAGCGTTCTTGATTTTCTTGAG 939
Query 321 AAACTG-AGAGATGAGTTAAAAG-AAGCTAATAAGAAGAATTCTAGAGGAAGTTTCTCTG 378
|||||| || |||||| | |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 940 AAACTGAAG-GATGAG-TCAAAGAAAGCTAATAAGAAGAATTCCAGAGGAAGTTTCTCTG 997
Query 379 GTAGTATCAGTTTTAGCAATGTTCAAGACCAAATTGTCCGAAGACTCATAGCTTCATTAG 438
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 998 GGAGTATCAGTTTTAGCAATGTTCAAGACCAAATTGTTCGAAGACTCATAGCTTCACTGG 1057
Query 439 AGTTTGATCACACTTGTCTTCCATTATCATCACCTTCCATTGATGGTGCTGAACAAAGCT 498
|| ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1058 AGAATGATCTCACTTGTCTTCCAATATCATTACCTTCCATTGATGGTGCTGAACAAAGCG 1117
Query 499 ACGCATCTAACT-C-C-AAAGCTCCTCTTTTAGGAAGATCCAACAAGCAAGATAAGAAGA 555
||||| |||| | | | |||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 1118 ACGCAGCTAATTCCACGAAAGCTCCGCTTTTAGGCAGATCCAACAAGCAAGAGAAGAAGA 1177
Query 556 AAGGGAGAGATCATGCGCACTCACTAAGAGGTATTGAGATAGAGGAACACCGAAAATCAA 615
|||| |||||||||| ||||||||| ||||| |||||||| || |||||||| ||||| |
Sbjct 1178 AAGGAAGAGATCATGTGCACTCACTGAGAGGCATTGAGATTGAAGAACACCGGAAATCGA 1237
Query 616 ATGATAGAGGAAACGTAACAGAATGTTCTAATGCTTCATCTGAATCAGCAACGTATGTTC 675
|||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 1238 ATGATAGAGGAAACGTAACAGAATGTTCTAATGCCTCATCTGCAGCAGCAACGTATGTTT 1297
Query 676 CAAGAAGGGGACGATCT-GGTGGCTCTCAGAGCATTGAGAGGAAGTGGCGGCGTCAAGTG 734
||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1298 CAAGAAGGGGACGAT-TAGGTGGTTCTCAGAGCATTGAGAGGAAATGGCGGCGTCAAGTG 1356
Query 735 AAGATTGTTCTTGCCATTGATATAGCTATTTGCTTAACGCTGCTTGGTGTTTGGTTGGCT 794
|||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||
Sbjct 1357 CAGATTGTTCTTGCCATTGATGCAGCTATTTGCTTAACGCTACTTGGTATTTGGTTGGCT 1416
Query 795 ATTTGTCATGGCATTGAGTGTACACGTTCTTGA 827
|||||||||||||||||||||||||||||||||
Sbjct 1417 ATTTGTCATGGCATTGAGTGTACACGTTCTTGA 1449
> Ahg489864 jgi|Araly1|489864|fgenesh2_kg.6__2998__AT4G10170.1
Length=1120
Score = 244 bits (132), Expect = 7e-64
Identities = 263/324 (81%), Gaps = 18/324 (6%)
Strand=Plus/Plus
Query 56 CAACATGGGTTCAATCCAA-AACACAGTTCACTACTGTTGTGTCTCAAGAGACAATCAGA 114
||| ||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 221 CAATATGGGTTTAAT-CAAGAACACAGTTCATTACTGTTGTGTCTCAAGAGACAATCAGA 279
Query 115 TTATGTACGCTTACAACAATGCCGGAGACCACCGCAAC-AACGAGAGTCTTGCAGCGTTA 173
|| | ||| |||||||| || | |||||| ||| |||||||||||||| || ||
Sbjct 280 TTCTTTACTCTTACAACGGTG--G-AGACCA----AACCAACGAGAGTCTTGCTGCTTTG 332
Query 174 TGCTTGGAAAAGACTCCACCTTTTCACAAGTGGTACTTCGAAACGAG-GGGTAAGAAGAC 232
|| || |||||| |||| ||||||||||| |||||||| ||||| | ||| |||| ||
Sbjct 333 TGTTTAGAAAAGTCTCCTCCTTTTCACAATTGGTACTTTGAAACTATTGGG-AAGAGGAG 391
Query 233 TTTTGGATTCTTGAT--GAAAGATGACTTCGTTTATTTCGCCATTGTTGATGATGTTTTC 290
||||| || || || | | |||| || ||||||||||||||||||||||| |||||
Sbjct 392 ATTTGGGTTTTT-ATTTGGA-GATGGGTTTGTTTATTTCGCCATTGTTGATGAGGTTTTG 449
Query 291 AAGAAATCTAGCGTTCTTGATTTTCTTGAAAAACTGAGAGATGAGTTAAAAGAA-GCTAA 349
|||| |||||| |||||| | ||||||||| | |||||||||| || || ||| |||
Sbjct 450 AAGAGATCTAGTGTTCTTAAGTTTCTTGAACATTTGAGAGATGAATTCAA-GAAAGCTGC 508
Query 350 TAAGAAGAATTCTAGAGGAAGTTT 373
|| ||| |||||||||||||||||
Sbjct 509 TAGGAATAATTCTAGAGGAAGTTT 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5