BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33490.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922442 jgi|Araly1|922442|scaffold_103723.1 950 0.0
Ahg942814 jgi|Araly1|942814|scaffold_603358.1 433 1e-120
> Ahg922442 jgi|Araly1|922442|scaffold_103723.1
Length=570
Score = 950 bits (514), Expect = 0.0
Identities = 548/565 (97%), Gaps = 0/565 (0%)
Strand=Plus/Plus
Query 102 TTTGTTGAACAATTCTTATGGCGATTTCGAAAGGTAGATTGAAAGTTTGGTTCGATAAGA 161
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 6 TTTTTTGAAGAATTCTTATGGCGATTTCGAAAGGTAGATTGAAAGCTTGGTTCGATAAGA 65
Query 162 AGATCAGTGAACCACTTATCCAGATCTTGCGCAGAGGTGCTGAGCCAAAGCAGCTGGCTT 221
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 AGATCAGTGAACCACTTGTCCAGATCTTGCGCAGAGGTGCTGAGCCAAAGCAGCTGGCTT 125
Query 222 TTTCTGCGGCATTGGGTATTACCATGGGAGTATTTCCAATCTGTGGTGTTACGGTGTTAC 281
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 126 TTTCTGCGGCATTGGGTATTACCATGGGAGTATTTCCAATCTGCGGTGTTACCGTGTTGC 185
Query 282 TATGTGGAGTGGCTATTGCGTCGCTTGGATCTCTTTGTCATGCTCCAACTGTGATGTTGG 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TATGTGGAGTGGCTATTGCGTCGCTTGGATCTCTTTGTCATGCTCCAACTGTGATGTTGG 245
Query 342 CTAACTTCATTGCTACTCCAATAGAACTAAGTCTTGTGGTGCCTTTCTTACGACTTGGCG 401
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 246 CTAATTTCATTGCTACTCCAATAGAACTAAGTCTTGTTGTGCCTTTCTTACGACTTGGCG 305
Query 402 AAAAAATAACCGGTGGACCTCATTTTCCTTTAACATCTGATGCCCTAAAGAAGGTTTTCA 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AAAAAATAACCGGTGGACCTCATTTTCCTTTAACATCTGATGCCCTAAAGAAGGTTTTCA 365
Query 462 CAGGCCAAGCTTCCCGAGATGtttttttAAGCATTGGAAATGCGCTACTAGGATGGCTCA 521
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 366 CAGGCCAAGCTTCCCGAGATGTTTTTATAAGCATTGGAAATGCGCTACTAGGATGGCTCA 425
Query 522 TAGCGGCACCATTTGTGATCGTTGCACTATACATCATGTTTCTCCCATGTTTCAAAATAC 581
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 426 TAGCGGCTCCATTTGTGATCGTTGCACTATACATCATGTTTCTCCCATGTTTCAAAATCC 485
Query 582 TTGTCCGCAAATTCAGCTCTGTTGATTCAACCGCAAAGACACCTACAAAGGAAAGGATCG 641
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 486 TTGTCCGCAAATTCAGCTCTGTTGATTCAACCACAAAGACACCTACAAAGGAAAGGATCG 545
Query 642 CGTAAAATGAAACAGTTATCGGTTT 666
| |||||| |||||||| | |||||
Sbjct 546 CTTAAAATCAAACAGTTCTTGGTTT 570
> Ahg942814 jgi|Araly1|942814|scaffold_603358.1
Length=600
Score = 433 bits (234), Expect = 1e-120
Identities = 427/520 (82%), Gaps = 13/520 (3%)
Strand=Plus/Plus
Query 115 TCTT-ATGGCGATT-TCGAAAGGTAGATTGAAAGTTTGGTTCGATAAGAAGATCAGTGAA 172
|||| |||| | || || ||||||||||| |||| |||||| ||||||| |||| |||
Sbjct 19 TCTTGATGG-GTTTATCAAAAGGTAGATTAAAAGCATGGTTCAATAAGAAAATCACTGAT 77
Query 173 CCACTTATCCAGATCTTGCGCAGAGGTGCTGAGCCAAAGCAGCTGGCTTTTTCTGCGGCA 232
|| ||| ||||||||||||| |||||| |||||||||||||||| ||||| ||||| |||
Sbjct 78 CCTCTTCTCCAGATCTTGCGTAGAGGTACTGAGCCAAAGCAGCTTGCTTTCTCTGCCGCA 137
Query 233 TTGGGTATTACCAT-GGGAGTATTTCCAATCTGTGGTGTTACGGTGTTACTATGTGGAGT 291
|||||||||| | |||| ||||||| || ||||||||| | ||||| |||||||||||
Sbjct 138 CTGGGTATTACTTTGGGGA-TATTTCCGATATGTGGTGTTCCTGTGTTTCTATGTGGAGT 196
Query 292 GGCTATTGCGTCGCTTGGATCT-CTTTGTCATGCTCCAACTGTGATGTTGGCTAACT-TC 349
||| |||||| ||| |||||| | |||||||||||||||||||||||||||||| | ||
Sbjct 197 AGCTTTTGCGTTGCTCGGATCTGC-TTGTCATGCTCCAACTGTGATGTTGGCTAA-TATC 254
Query 350 ATTGCTACTCCAATAGAACTAAG-TCTTGTGGTGCCTTTCTTACGACTTGGCGAAAAAAT 408
||||| |||||| ||||||| || ||| || ||||||||| || ||||||| |||||| |
Sbjct 255 ATTGCCACTCCAGTAGAACT-AGCTCTCGTCGTGCCTTTCCTAAGACTTGGTGAAAAAGT 313
Query 409 AACCGGTGGACCTCATTTTCCTTTAACATCTGATGCCCTAAAGAAGGTTTTCACAGGCCA 468
|| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||
Sbjct 314 CACTGGTGGACCTCATTTTCCTTTGACATCAGATGCTCTAAAGAAGGTTTTCACTGGTCA 373
Query 469 AGCTTCCCGAG-ATGtttttttAAGCATTGGAAATGCGCTACTAGGATGGCTCATAGCGG 527
||| || | || | || |||||||||||||| |||||| ||||||| |||||| ||||
Sbjct 374 AGCCTCTC-AGGAAGTCTTTTTAAGCATTGGTAATGCGTTACTAGGGTGGCTCGTAGCAA 432
Query 528 CACCATTTGTGATCGTTGCACTATACATCATGTTTCTCCCATGTTTCAAAATACTTGTCC 587
| |||||| | | || | |||| | |||| || |||||||||||||| || ||||
Sbjct 433 CTCCATTTTTCTTTATTACGTTATATGTTGTGTTGCTGCCATGTTTCAAAATCCTCGTCC 492
Query 588 GCAAATTCAGCTCTGTTGATTCAACCGCAAAGACACCTAC 627
||||||| || | | | |||| ||| ||||| ||||||
Sbjct 493 GCAAATTTGGCGCCGGTAATTCGACCCCAAAGTTACCTAC 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5