BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33500.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473523 jgi|Araly1|473523|fgenesh2_kg.1__3477__AT1G33500.1 1182 0.0
> Ahg473523 jgi|Araly1|473523|fgenesh2_kg.1__3477__AT1G33500.1
Length=819
Score = 1182 bits (640), Expect = 0.0
Identities = 762/820 (93%), Gaps = 11/820 (1%)
Strand=Plus/Plus
Query 10 CCGCTAGTTTCAAAAATTTGTCACCATTTCGAAATCTCTCAGAAGGCGAGAGCTCGCGTT 69
||||||||||||||| |||||| |||||||||||| |||| ||||| ||||||||||| |
Sbjct 1 CCGCTAGTTTCAAAATTTTGTCGCCATTTCGAAATTTCTCTGAAGGTGAGAGCTCGCGGT 60
Query 70 TGAATTgaagaaatccgagaagt---------gaagaagaagaagaagagaTGGAGGAGT 120
||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 61 TGAATTGAAGAAATCGGAGAAGTGAAGAAGAAGAAGAAGAAGAAGAAGAGATGGAGGAGT 120
Query 121 ATCTACAGTATATGAAGACTCTCCGTTCTCAGATGACTGATGTGGAGGATCATGCGGCGA 180
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 121 ATCTACAGTATATGAAGACTCTCCGGTCTCAAATGACTGATGTGGAGGATCACGCGGCGA 180
Query 181 AGGTCTCCGTTGAGGAACAGATGCAGGTTACAACAATCAGTACCTTGGAAAAAGATCTCG 240
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 181 AGGTCTCCGTCGAGGAACAGATGCAGGTTACAACAATCAATACCTTGGAGAAAGATCTCG 240
Query 241 AACATGCATTGTCTGAGACGAAGAGACTGAAAGAGGAGACGGATCAGAAGACGAGG-ACA 299
| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||| | |
Sbjct 241 ATCATGCATTGTCTGAAACGAAGAGACTTAAAGAGGAAACGGATCAGAAGACGAGGAAGA 300
Query 300 AGAGGTGAGATATGCTCACATATACTTGAGAAGCAGAGGAAAATTTCGTCGATGGAATCT 359
| ||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 301 A-AGGCGAAATATGCTCACATATACTTGAGAAGCAGAGAAAAATTTCGTCCATGGAATCT 359
Query 360 GATTCAGTTAATATTGCACAGAGTTTGGAGCTTATTCTTCAAGAACGAGACAGTTTATCT 419
||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 GATTCAGCAAATCTTTCACAGAGTCTGGAGCTTATTCTTCAAGAACGAGACAGTTTATCT 419
Query 420 GCTAAACTCGTATCGAAACGTTCTAACTATCTCAAGACGGCAGAAGAAGCTAGAACCAAA 479
|| ||||| || | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GCAAAACTTGTGTTGAAACGTTCTAACTATGTCAAGACGGCAGAAGAAGCTAGAACCAAA 479
Query 480 CTAGAGGAGCAAAAGGGCTGGTTTATCTCCCATATGAGCAATGAAACTGGTCAACAAGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTAGAGGAGCAAAAGGGCTGGTTTATCTCCCATATGAGCAATGAAACTGGTCAACAAGGA 539
Query 540 CATAAAAAAGAGACAAGGAATAACCTGATGGAACTATCAGATTCTGCTAGAGCAAAGCTT 599
|| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 540 CAGAAAAAAGAGACAAGGAATAACCTGTTGGAACTATCAGATTCTGCAAGAGCAAAGCTT 599
Query 600 GATCAAGCAAAACTGATGAGATCCAACCTTCTTCAGGAAAATTCGAAGATCAAACTATCA 659
||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 600 GATCAAGCAAAACAGATGAGATCCAACCTTCTTCAGGAAATTTCGAAGATCAAGCTATCA 659
Query 660 ATTGAGAATGTGAAGCACAAGATTAATGAGTTTAAGCCAGAGTTAATGTCAGTGGATATT 719
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 660 ATTGAGAATGTGAAGCACAAAATTAATGAGTTTAAGCCAGAGTTGATGTCGGTGGATATT 719
Query 720 AAGATCCTAGAAGAGGAATACACAGCTCTATTGTCAGATGAGTCCGGAGAGGCAGAGTAT 779
||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 720 AAGGTTCTAGAAGAGGAATACACAGCTCTCTTGTCAGATGAGTCTGGAGAGGCAGAGTAT 779
Query 780 CTCAGTTCGCTACAGAGTCAGGCTGAGAAACTGAAGGTGA 819
|| |||||||| ||||||||||||||||||||||||||||
Sbjct 780 CTAAGTTCGCTGCAGAGTCAGGCTGAGAAACTGAAGGTGA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5