BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33500.1 Length=976 Score E Sequences producing significant alignments: (Bits) Value Ahg473523 jgi|Araly1|473523|fgenesh2_kg.1__3477__AT1G33500.1 1182 0.0 > Ahg473523 jgi|Araly1|473523|fgenesh2_kg.1__3477__AT1G33500.1 Length=819 Score = 1182 bits (640), Expect = 0.0 Identities = 762/820 (93%), Gaps = 11/820 (1%) Strand=Plus/Plus Query 10 CCGCTAGTTTCAAAAATTTGTCACCATTTCGAAATCTCTCAGAAGGCGAGAGCTCGCGTT 69 ||||||||||||||| |||||| |||||||||||| |||| ||||| ||||||||||| | Sbjct 1 CCGCTAGTTTCAAAATTTTGTCGCCATTTCGAAATTTCTCTGAAGGTGAGAGCTCGCGGT 60 Query 70 TGAATTgaagaaatccgagaagt---------gaagaagaagaagaagagaTGGAGGAGT 120 ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 61 TGAATTGAAGAAATCGGAGAAGTGAAGAAGAAGAAGAAGAAGAAGAAGAGATGGAGGAGT 120 Query 121 ATCTACAGTATATGAAGACTCTCCGTTCTCAGATGACTGATGTGGAGGATCATGCGGCGA 180 ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 121 ATCTACAGTATATGAAGACTCTCCGGTCTCAAATGACTGATGTGGAGGATCACGCGGCGA 180 Query 181 AGGTCTCCGTTGAGGAACAGATGCAGGTTACAACAATCAGTACCTTGGAAAAAGATCTCG 240 |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 181 AGGTCTCCGTCGAGGAACAGATGCAGGTTACAACAATCAATACCTTGGAGAAAGATCTCG 240 Query 241 AACATGCATTGTCTGAGACGAAGAGACTGAAAGAGGAGACGGATCAGAAGACGAGG-ACA 299 | |||||||||||||| ||||||||||| |||||||| |||||||||||||||||| | | Sbjct 241 ATCATGCATTGTCTGAAACGAAGAGACTTAAAGAGGAAACGGATCAGAAGACGAGGAAGA 300 Query 300 AGAGGTGAGATATGCTCACATATACTTGAGAAGCAGAGGAAAATTTCGTCGATGGAATCT 359 | ||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 301 A-AGGCGAAATATGCTCACATATACTTGAGAAGCAGAGAAAAATTTCGTCCATGGAATCT 359 Query 360 GATTCAGTTAATATTGCACAGAGTTTGGAGCTTATTCTTCAAGAACGAGACAGTTTATCT 419 ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 GATTCAGCAAATCTTTCACAGAGTCTGGAGCTTATTCTTCAAGAACGAGACAGTTTATCT 419 Query 420 GCTAAACTCGTATCGAAACGTTCTAACTATCTCAAGACGGCAGAAGAAGCTAGAACCAAA 479 || ||||| || | |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 420 GCAAAACTTGTGTTGAAACGTTCTAACTATGTCAAGACGGCAGAAGAAGCTAGAACCAAA 479 Query 480 CTAGAGGAGCAAAAGGGCTGGTTTATCTCCCATATGAGCAATGAAACTGGTCAACAAGGA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CTAGAGGAGCAAAAGGGCTGGTTTATCTCCCATATGAGCAATGAAACTGGTCAACAAGGA 539 Query 540 CATAAAAAAGAGACAAGGAATAACCTGATGGAACTATCAGATTCTGCTAGAGCAAAGCTT 599 || |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 540 CAGAAAAAAGAGACAAGGAATAACCTGTTGGAACTATCAGATTCTGCAAGAGCAAAGCTT 599 Query 600 GATCAAGCAAAACTGATGAGATCCAACCTTCTTCAGGAAAATTCGAAGATCAAACTATCA 659 ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 600 GATCAAGCAAAACAGATGAGATCCAACCTTCTTCAGGAAATTTCGAAGATCAAGCTATCA 659 Query 660 ATTGAGAATGTGAAGCACAAGATTAATGAGTTTAAGCCAGAGTTAATGTCAGTGGATATT 719 |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct 660 ATTGAGAATGTGAAGCACAAAATTAATGAGTTTAAGCCAGAGTTGATGTCGGTGGATATT 719 Query 720 AAGATCCTAGAAGAGGAATACACAGCTCTATTGTCAGATGAGTCCGGAGAGGCAGAGTAT 779 ||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 720 AAGGTTCTAGAAGAGGAATACACAGCTCTCTTGTCAGATGAGTCTGGAGAGGCAGAGTAT 779 Query 780 CTCAGTTCGCTACAGAGTCAGGCTGAGAAACTGAAGGTGA 819 || |||||||| |||||||||||||||||||||||||||| Sbjct 780 CTAAGTTCGCTGCAGAGTCAGGCTGAGAAACTGAAGGTGA 819 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36254894067 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5