BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33530.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913172 jgi|Araly1|913172|Al_scaffold_0001_3426 1142 0.0
> Ahg913172 jgi|Araly1|913172|Al_scaffold_0001_3426
Length=1197
Score = 1142 bits (618), Expect = 0.0
Identities = 787/866 (91%), Gaps = 22/866 (3%)
Strand=Plus/Plus
Query 1 ATGACTTTTTCAATTGAGAAACTGGTGGACTTGAAGAGAAAGAAGTGGCAGTCGAAGCTC 60
||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTTTTCAATTGTGAAACTAGTGAACTTGAAGAGAAAGAAGTGGCAGTCGAAGCTC 60
Query 61 CAAAATACAAAGAAACAGGTTTTAGGCCGATGTTTAACAAATTTTAGCAGACTTTTGAGT 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CAAAATACAAAGAAACAGGTTTTAGGCCGATGTTTAGCAAATTTTAGCAGACTTTTGAGT 120
Query 121 TTTCGTAAGAAACAAGAAACAAACGGAAAAAGCCCTAGATGTAGCAAAGCCACGCTTGCT 180
||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||
Sbjct 121 TTTCGTAAGAAACAAGAAAGGAACGGAAAAAACCCTAGATGTAGCAAAACCACGCTTGCT 180
Query 181 GTTGTTGTTCATCCAACAGCCAGTACTACACATGATGAT-TT-TT-------TACGTAAG 231
|||||||||||||||| | | ||| ||| ||| || ||| || || || |||||
Sbjct 181 GTTGTTGTTCATCCAATATCTAGTGCTATACAAGAGGATCTTGTTGAAGACATATGTAAG 240
Query 232 AAACAAGAAAGGAGCGGAAAAAGCCCTAGCTGTAGCGAAACAACGCTTGCTGTGGAGTTA 291
||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||
Sbjct 241 AAACAAGAAAGGAGCGGAAAAAGCCCTAGTTATAGCGAAACAACGCTTCCTGTTGAGTTA 300
Query 292 CCGGATGTTCTAGTAGAAGAGATTCTTCAACGCCTTCCGGTGAAATATTTGGTAAGATTG 351
|| || | ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 301 CCAGAGGATCTAGTAGAAGAGATTCTTCACCGTCTTCCGGTGAAATATTTGGTAAGATTG 360
Query 352 AAATCAATATCAAAAGGATGGAAATCTTTGATTGAAT-CTGACCATCTAGCAGAGAAACA 410
|||||| |||| |||| ||||||||| |||||||||| | | |||||||||||||||||
Sbjct 361 AAATCAGTATCGAAAGTATGGAAATCATTGATTGAATCCAG-TCATCTAGCAGAGAAACA 419
Query 411 TCTCCGTCTGCTTGaaaaaaaGTATGGACTCAAAGAGATAAAAATCACAGTTGAGCGGTC 470
||||||||| |||||||||||||||||| |||||||||| |||||||| ||| || ||||
Sbjct 420 TCTCCGTCTCCTTGAAAAAAAGTATGGAGTCAAAGAGATGAAAATCACTGTTAAGTGGTC 479
Query 471 CACATCGAAAAGCATTTGTATCAAGTTTTTCTCAAGACGCAGTGGAATGAACGCAATCAA 530
|||||| |||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 480 CACATCAAAAAGCATTTGTATAAAGTTTTTCTCAAGACGCAGTGGAATG---G------A 530
Query 531 TAGTGATTCCGATGATCTTCTTCGAGTTCCTGGTTCTTGTAATGGTTTGGTATGCGTCTA 590
|||| |||| || | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 531 TAGTAATTCAGAAGGTCTTCTTCGAGTTCCTGGTTCTTGTAATGGTTTGGTCTGCGTCTA 590
Query 591 CGAGTTGGATTCGGTCTACATTTACCTACTCAACCCTATGACAGGTGTGACCCGGACACT 650
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CGAGTTGGATTTGGTCTACATTTACCTACTCAACCCTATGACAGGTGTGACCCGGACACT 650
Query 651 TACTCCTCCTCGAGGTACCAAACTTTCAGTTGGATTTGGGAT-AGATGTTGTGACAGGAA 709
||||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||
Sbjct 651 TACTCCTCCTCGAGGTACCAAACTTTCAGTTGGATTTGG-ATCAGATATTGTTACAGGAA 709
Query 710 CTTACAAAGTGATGGTTTTGTATGGCTTCGACAGAGTAGGAACTGTGGTGTTCGATCTCG 769
| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 710 CATACAAAGTGGTGGTTTTGTATGGCTTCGACAGAGTAGGAACTGTGGTTTTCGATCTCT 769
Query 770 ACACTAATAAGTGGAGGCAGAGATACAAAACTGCTGGTCCAATGCCACTTTCTTGCATTC 829
||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 CCACTAGTAAGTGGAGGCGGAGATACAAAACCGCTGGTCCAATGCCACTTTCTTGCATTC 829
Query 830 CAACCCCTGAAAGAAACCCAGTCTTT 855
|||||||||||||||||||||| |||
Sbjct 830 CAACCCCTGAAAGAAACCCAGTTTTT 855
Score = 492 bits (266), Expect = 3e-138
Identities = 320/344 (93%), Gaps = 11/344 (3%)
Strand=Plus/Plus
Query 901 ATACTAGTCATGGATCTTCACACGGAAAAGTTCCGCACTTTGTCACAACCCAATGACATG 960
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 856 ATACTAGTCATGGATCTTCACACTGAAAAGTTCCGTACTTTGTCGCAACCCAATGACATG 915
Query 961 GATGATGTTGATGTGTCCTCAGGTTACATTTACATGTGGAGTCTCGAGGACCGTCTCTGT 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 916 GATGATGTTGATGTGTCCTCGGGTTACATTTACATGTGGAGTCTCGAGGACCGGCTCTGT 975
Query 1021 GTATCTAATGTT-AGACAAGGTTTGCATTCCTACGTGTGGGTTCTTGTGCAGGACGAGCT 1079
|| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 976 GTCTCTAAT-TTCAGACAAGGTTTGCATTCTTACGTGTGGGTTCTTGTGCAGGACGAGCT 1034
Query 1080 TAGTGAGAAGTGGGAGAGAACTAGATTTAATCTCCTAGGTCATGTCTTTCCTCCATTAAG 1139
|||||||| | | | |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1035 TAGTGAGA-G----A-A---CTAGATTTAATCTCCTAGGTCATGTCCTTCCTCCACTAAG 1085
Query 1140 CTTGAATTCTGCTTGGTTTTCACAGACCTTGGTTTCTCCTTACCAGTTGTCGTCTTCAAC 1199
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1086 CTTGGATTCTGCTTGGTTTTCACAGACCTTGGTTTCTCCTTACCAGTCGTCGTCTTCAAC 1145
Query 1200 ATGTATCGGTTCTAGACAAAGACAGAATAGTACCTCTGCGCTAT 1243
|||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1146 ATGTATCGGTTCTAGACAAAGACAGAATAGGACCTCTGCACTAT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5