BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33530.1 Length=1326 Score E Sequences producing significant alignments: (Bits) Value Ahg913172 jgi|Araly1|913172|Al_scaffold_0001_3426 1142 0.0 > Ahg913172 jgi|Araly1|913172|Al_scaffold_0001_3426 Length=1197 Score = 1142 bits (618), Expect = 0.0 Identities = 787/866 (91%), Gaps = 22/866 (3%) Strand=Plus/Plus Query 1 ATGACTTTTTCAATTGAGAAACTGGTGGACTTGAAGAGAAAGAAGTGGCAGTCGAAGCTC 60 ||| |||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTTTTTCAATTGTGAAACTAGTGAACTTGAAGAGAAAGAAGTGGCAGTCGAAGCTC 60 Query 61 CAAAATACAAAGAAACAGGTTTTAGGCCGATGTTTAACAAATTTTAGCAGACTTTTGAGT 120 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 61 CAAAATACAAAGAAACAGGTTTTAGGCCGATGTTTAGCAAATTTTAGCAGACTTTTGAGT 120 Query 121 TTTCGTAAGAAACAAGAAACAAACGGAAAAAGCCCTAGATGTAGCAAAGCCACGCTTGCT 180 ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| Sbjct 121 TTTCGTAAGAAACAAGAAAGGAACGGAAAAAACCCTAGATGTAGCAAAACCACGCTTGCT 180 Query 181 GTTGTTGTTCATCCAACAGCCAGTACTACACATGATGAT-TT-TT-------TACGTAAG 231 |||||||||||||||| | | ||| ||| ||| || ||| || || || ||||| Sbjct 181 GTTGTTGTTCATCCAATATCTAGTGCTATACAAGAGGATCTTGTTGAAGACATATGTAAG 240 Query 232 AAACAAGAAAGGAGCGGAAAAAGCCCTAGCTGTAGCGAAACAACGCTTGCTGTGGAGTTA 291 ||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||| Sbjct 241 AAACAAGAAAGGAGCGGAAAAAGCCCTAGTTATAGCGAAACAACGCTTCCTGTTGAGTTA 300 Query 292 CCGGATGTTCTAGTAGAAGAGATTCTTCAACGCCTTCCGGTGAAATATTTGGTAAGATTG 351 || || | ||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 301 CCAGAGGATCTAGTAGAAGAGATTCTTCACCGTCTTCCGGTGAAATATTTGGTAAGATTG 360 Query 352 AAATCAATATCAAAAGGATGGAAATCTTTGATTGAAT-CTGACCATCTAGCAGAGAAACA 410 |||||| |||| |||| ||||||||| |||||||||| | | ||||||||||||||||| Sbjct 361 AAATCAGTATCGAAAGTATGGAAATCATTGATTGAATCCAG-TCATCTAGCAGAGAAACA 419 Query 411 TCTCCGTCTGCTTGaaaaaaaGTATGGACTCAAAGAGATAAAAATCACAGTTGAGCGGTC 470 ||||||||| |||||||||||||||||| |||||||||| |||||||| ||| || |||| Sbjct 420 TCTCCGTCTCCTTGAAAAAAAGTATGGAGTCAAAGAGATGAAAATCACTGTTAAGTGGTC 479 Query 471 CACATCGAAAAGCATTTGTATCAAGTTTTTCTCAAGACGCAGTGGAATGAACGCAATCAA 530 |||||| |||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 480 CACATCAAAAAGCATTTGTATAAAGTTTTTCTCAAGACGCAGTGGAATG---G------A 530 Query 531 TAGTGATTCCGATGATCTTCTTCGAGTTCCTGGTTCTTGTAATGGTTTGGTATGCGTCTA 590 |||| |||| || | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 531 TAGTAATTCAGAAGGTCTTCTTCGAGTTCCTGGTTCTTGTAATGGTTTGGTCTGCGTCTA 590 Query 591 CGAGTTGGATTCGGTCTACATTTACCTACTCAACCCTATGACAGGTGTGACCCGGACACT 650 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 CGAGTTGGATTTGGTCTACATTTACCTACTCAACCCTATGACAGGTGTGACCCGGACACT 650 Query 651 TACTCCTCCTCGAGGTACCAAACTTTCAGTTGGATTTGGGAT-AGATGTTGTGACAGGAA 709 ||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||| Sbjct 651 TACTCCTCCTCGAGGTACCAAACTTTCAGTTGGATTTGG-ATCAGATATTGTTACAGGAA 709 Query 710 CTTACAAAGTGATGGTTTTGTATGGCTTCGACAGAGTAGGAACTGTGGTGTTCGATCTCG 769 | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 710 CATACAAAGTGGTGGTTTTGTATGGCTTCGACAGAGTAGGAACTGTGGTTTTCGATCTCT 769 Query 770 ACACTAATAAGTGGAGGCAGAGATACAAAACTGCTGGTCCAATGCCACTTTCTTGCATTC 829 ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 770 CCACTAGTAAGTGGAGGCGGAGATACAAAACCGCTGGTCCAATGCCACTTTCTTGCATTC 829 Query 830 CAACCCCTGAAAGAAACCCAGTCTTT 855 |||||||||||||||||||||| ||| Sbjct 830 CAACCCCTGAAAGAAACCCAGTTTTT 855 Score = 492 bits (266), Expect = 3e-138 Identities = 320/344 (93%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 901 ATACTAGTCATGGATCTTCACACGGAAAAGTTCCGCACTTTGTCACAACCCAATGACATG 960 ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 856 ATACTAGTCATGGATCTTCACACTGAAAAGTTCCGTACTTTGTCGCAACCCAATGACATG 915 Query 961 GATGATGTTGATGTGTCCTCAGGTTACATTTACATGTGGAGTCTCGAGGACCGTCTCTGT 1020 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 916 GATGATGTTGATGTGTCCTCGGGTTACATTTACATGTGGAGTCTCGAGGACCGGCTCTGT 975 Query 1021 GTATCTAATGTT-AGACAAGGTTTGCATTCCTACGTGTGGGTTCTTGTGCAGGACGAGCT 1079 || |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 976 GTCTCTAAT-TTCAGACAAGGTTTGCATTCTTACGTGTGGGTTCTTGTGCAGGACGAGCT 1034 Query 1080 TAGTGAGAAGTGGGAGAGAACTAGATTTAATCTCCTAGGTCATGTCTTTCCTCCATTAAG 1139 |||||||| | | | |||||||||||||||||||||||||| |||||||| |||| Sbjct 1035 TAGTGAGA-G----A-A---CTAGATTTAATCTCCTAGGTCATGTCCTTCCTCCACTAAG 1085 Query 1140 CTTGAATTCTGCTTGGTTTTCACAGACCTTGGTTTCTCCTTACCAGTTGTCGTCTTCAAC 1199 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1086 CTTGGATTCTGCTTGGTTTTCACAGACCTTGGTTTCTCCTTACCAGTCGTCGTCTTCAAC 1145 Query 1200 ATGTATCGGTTCTAGACAAAGACAGAATAGTACCTCTGCGCTAT 1243 |||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1146 ATGTATCGGTTCTAGACAAAGACAGAATAGGACCTCTGCACTAT 1189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49597915017 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5