BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33540.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922447 jgi|Araly1|922447|scaffold_103728.1 1550 0.0
> Ahg922447 jgi|Araly1|922447|scaffold_103728.1
Length=1368
Score = 1550 bits (839), Expect = 0.0
Identities = 1004/1080 (93%), Gaps = 25/1080 (2%)
Strand=Plus/Plus
Query 1 ATGTCTAAAGCATGGAAACTTAAGTTGCTTCTTCTACTTCAACTGCTACTTTTGAGTCAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21 ATGTCTAAAGCATGGAAACTTAAGTTGCTTCTTCTACTTCAACTGCTACTCTTGAGTCAA 80
Query 61 CATGATGTTGATTCAGCTTCTGTGATTAGCTATCTTCCTGGTTTCGAAGGTCTTCTTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CATGATGTTGATTCAGCTTCTGTGATTAGCTATCTTCCTGGTTTCGAAGGTCTTCTTCCA 140
Query 121 TTCCACCTTGAAACTGGCTACATTGGTGTTGGTGAGGGAGAGAAAGTGCAGCTTTTCTAC 180
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 141 TTCCACCTTGAAACTGGGTACATTGGTGTTGGTGAGGGAGAGAAAGTGCAACTTTTCTAC 200
Query 181 TACTTTATCAAATCAGAGAACAATCCTGAAGAAGACCCTCTTATTATCTGGTTAACTGGA 240
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 201 TACTTTATTAAATCAGAGAACAATCCTGAAGAAGACCCTCTTATTCTCTGGTTAACTGGA 260
Query 241 GGACCAGCTTGCACTGCTCTCTCCGCACTTGCTTTCGAGATCGGGCCGTTGACTTTTAAG 300
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 261 GGACCAGCTTGCACTGCTCTCTCTGCACTTGCTCTCGAGATCGGGCCGTTGACTTTCAAG 320
Query 301 ACTGAGGGTTACAATGGAGGTTTGCCTTCTCTTGTCTCCACTTCATATTCTTGGACAAAG 360
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 321 ACTGAGGGTTACAATGGAGGTTCACCTTCTCTTGTCTCCACTTCATATTCTTGGACAAAG 380
Query 361 GTAGCTAGCATAATATTCTTGGATCAGCCTGTTGG-GACTGGCTACTCCTACTCAACAAC 419
||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 381 GTAGCTAGCATAATATTCTTGGATCAGCCTGTTGGAG-CTGGCTTCTCCTACTCAACAAC 439
Query 420 TCCTCTTTCTTATAAGCCTAGTGACACAGGAGAAGCAAAACAGACCTATGAGTTTCTCCA 479
|||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||| ||
Sbjct 440 TCCTCTTTCTGATAAGCCTAGTGACACAGGCGAAACAAAACAGACATATGAGTTTCTTCA 499
Query 480 AAAGTGGCTAGTGGAGAATCCACA--G--------------TT-----TGTCTCAAACCC 518
|||||||||||||||||||||| | | || ||||||||| ||
Sbjct 500 AAAGTGGCTAGTGGAGAATCCAGATCGAAACAAACAAACACTTCAACATGTCTCAAATCC 559
Query 519 TATCTATGTCGGCGGAGATTCTTACGCCGGTATAGTTGTTCCAGCTATTGTACAACAGAT 578
| |||||||||||||||||||||| | ||||||||||||| ||||||||| || |||||
Sbjct 560 TTTCTATGTCGGCGGAGATTCTTATTCTGGTATAGTTGTTCGAGCTATTGTTCAGCAGAT 619
Query 579 CTCAATAGGAAATGAACATGGCTATAAACCTCAAATAAATCTTAAGGGTTATATTCTTGG 638
|||||||||||||||||||||| | || ||| |||| |||||||||||||||||||||||
Sbjct 620 CTCAATAGGAAATGAACATGGCGACAACCCTAAAATGAATCTTAAGGGTTATATTCTTGG 679
Query 639 GAACCCTTCAACAGATCTTGATAGTGATCATAACTCCAAGATTCCGTATGCTCATCGAAT 698
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 680 GAACCCTTCAACAGATCTTGATAGTGATCATAACTCCAAGATTCCATATGCTCATCGAAT 739
Query 699 GGGACTTATCTCTGATGAACTCTACGAGTCGCTTAAGAGAACCTGCCAAGGAAATTATGT 758
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 740 GGGACTTATCTCTGATGAACTCTATGAGTCACTTAAGAGAACCTGCCAAGGAAATTATGT 799
Query 759 AAAAGTGGATCCTACTAATACAAAATGCTTGAAATTGATGGAGGACTACGGAAAGTGTGT 818
|||||||||||||||||||| | ||||||||| |||| |||| ||||| |||||||||
Sbjct 800 AAAAGTGGATCCTACTAATATACAATGCTTGATATTGGTGGACAACTACCAAAAGTGTGT 859
Query 819 TTCAAGGATAAATGAAGGACTCATTTTGATAGCATTGTGTGATTTGGCATCACCAAATCC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TTCAAGGATAAATGAAGGACTCATTTTGATAGCATTGTGTGATTTGGCATCACCAAATCC 919
Query 879 TTATTCAGGAGAACACGGTGGAAGAAGCTATCTT-CAGACACTTGTTCAATCAGATCTTT 937
||||||||| |||||||||| ||||||||||||| | |||||||||||| || ||||||
Sbjct 920 TTATTCAGGGGAACACGGTGAAAGAAGCTATCTTAC-GACACTTGTTCAGCCAAATCTTT 978
Query 938 CTCTTCCCACTCCTGATTGCTATATGTACCGGTATTTGCTAGCTTCACATTGGGCTAATG 997
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 979 CTCTTCCCACTCCCGACTGCTATATGTATCGGTATTTGCTAGCTTCACATTGGGCTAATG 1038
Query 998 ATGAAGATGTACGCAGAGAACTTCATGTGGTGAAAGGAAGTATAGGGAAATGGATGAGAT 1057
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1039 ATGAAGATGTACGCAGAGCACTTCATGTAGTGAAAGGAAGTATAGGGAAATGGATGAGAT 1098
Score = 350 bits (189), Expect = 2e-95
Identities = 230/249 (92%), Gaps = 6/249 (2%)
Strand=Plus/Plus
Query 1098 TGTGCCGTACCATCGAAACAATAGCATC-ATAGGGGATTATCGGTCATTGG----TTTAT 1152
||| |||||||| ||||||||||||||| | ||| |||||||||||||||| ||||
Sbjct 1099 TGTACCGTACCACCGAAACAATAGCATCGA-AGGTGATTATCGGTCATTGGTTAATTTAC 1157
Query 1153 AGCAGTGATCACGACATGATGGTGCCTTATATTGGAACTGAAGCTTGGATCAAATCTCTA 1212
||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1158 AGCGGTGATCACGACATGATGGTGCCTTATACTGGAACTGAAGCTTGGATTAAATCTCTA 1217
Query 1213 AACTACTCAATAACTGACGATTGGAGACCTTGGTTTGTTAACAATCAAGGAGGAGGGCAC 1272
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1218 AACTACTCAATAACTGACGATTGGAGGCCTTGGTTCGTTAACAATCAAGGAGGAGGGCAC 1277
Query 1273 ACCGCAGAGTATAAACCAGAGGAAAGCTTCATGATGTTCCAAAGGTGGATAAGTGGCCGA 1332
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1278 ACCGCAGAGTATAAACCGGAGGAAAGCTTCATAATGTTCCAAAGGTGGATAAGTGGACGA 1337
Query 1333 CCTCTCTAG 1341
||||||||
Sbjct 1338 ACTCTCTAG 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5