BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33560.1
Length=2815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473526 jgi|Araly1|473526|fgenesh2_kg.1__3480__AT1G33560.1 2700 0.0
Ahg487251 jgi|Araly1|487251|fgenesh2_kg.6__385__AT5G04720.1 1133 0.0
> Ahg473526 jgi|Araly1|473526|fgenesh2_kg.1__3480__AT1G33560.1
Length=2824
Score = 2700 bits (1462), Expect = 0.0
Identities = 1742/1873 (93%), Gaps = 36/1873 (2%)
Strand=Plus/Plus
Query 3 TATTAGGGAATATCGTAATTTAGAGTTTGTCTAGATAATCGAATTCGaaaaaaaaCTACT 62
||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||
Sbjct 1 TATTAGGGAATATCGTAATTTAGAGTTTGTCTAGACAACCGAATTCG-AAAAAACCTACT 59
Query 63 AAATCGATCTGTTTGATAATAAGTGAAAAACTGATACGTAACCATAAGATCCATACATTC 122
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||| | |
Sbjct 60 AAATCGATCTGTTTGATAATAAGTGAAAAATTGATACGTAACCATAAG-T-CATAGA-AC 116
Query 123 TCTGAAATCTATTACAAAGCTATTACATGTGTTACCGCAGAAACAAAACTTTAAAACACT 182
|| | |||| | | | | ||||| | || ||||||||||||||||||||
Sbjct 117 TC--ATCTCTA-T-C-TA--T-TTACA------A-AGC-TAAACAAAACTTTAAAACACT 160
Query 183 AAACGACAAAAC----G-TATGTTATTGGAAGTTGCTAAGAAACTTCGTCTTCTTCGCTA 237
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AAACGACAAAACGTAAGCTATGTTATTGGAAGTTGCTAAGAAACTTCGTCTTCTTCGCTA 220
Query 238 TTTTCTAATCT-AAAAACGTATCAACCCTTATTACCACTCAAC-CATCTCACTTTCTTTT 295
||||||| | | |||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 221 TTTTCTACTTTAAAAAACCTATCAACCCTTATTACCACTC-ACTCATCTCACTTTCTTTT 279
Query 296 TTCTGTCTTACACTCC-AAGATCGGTCTCGATGGCTTCGTTCATAGATCTTTTCGCCGGC 354
|||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 280 TTCTCTCTTACACTCCAAAGATCGGTCTCCATGGCGTCGTTCATAGATCTTTTCGCCGGC 339
Query 355 GACATCACGACGCAACTCTTAAAGCTGCTCGCTCTAGTAGCTAACACAGTCTACAGTTGC 414
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 340 GACATCACGACGCAACTCTTAAAGCTGCTCGTTCTAGTAGCTAACACTGTCTACAGTTGC 399
Query 415 AAAGGAATCGCCGAACGACTGATCACGATGATCAGAGACGTTCAACCAACGATCAGGGAG 474
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 400 AAAGGAATCGCTGAACGACTGATCACGATGATCAGAGACGTTCAACCAACGATCAAGGAG 459
Query 475 ATCCAATACAGTGGCGCGGAGCTGAGTAACCATCACCAAACTCAACTGGGAGTATTCTAT 534
|| ||||||||||||| ||||||||||||||||| |||||||||| || ||| ||||| |
Sbjct 460 ATTCAATACAGTGGCGTGGAGCTGAGTAACCATCGCCAAACTCAATTGCGAGGATTCTTT 519
Query 535 GAGATCTTGGAGAAAGCAAGAAAGCTATGTGAAAAGGTTTTAAGATGCAATAGGTGGAAC 594
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 520 GAGATCTTGGAGAAAGCAAGAAAGCTATGTGAAAAGGTTTTAAGATGCCGTAGGTGGAAC 579
Query 595 CTTAAACATGTGTACCACGCGAATAAGATGAAGGATCTCGAGAAACAA-ATATCTCGTTT 653
|||||||| || |||||||| || |||||||||||||| |||||| || |||||||||||
Sbjct 580 CTTAAACACGTCTACCACGCCAACAAGATGAAGGATCTTGAGAAA-AACATATCTCGTTT 638
Query 654 CCTCAACAGCCAGATTTTGCTCTTTGTTCTTGCTGAGGTATGTCATCTACGGGTCAATGG 713
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 639 CCTCAACAGCCAAATTCTGCTCTTTGTTCTTGCTGAGGTATGTCATCTACGGGTTAATGG 698
Query 714 TGACAGGATTGAGAGGAATATGGATAGACTGTTGACTGAGCGGAATGATTCTTTGTCGTT 773
|||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 699 TGACCGGATTGAGAGGAATATGGATAGACTATTGAGTGAGCGGAATGATTCTTTGTCGTT 758
Query 774 TCCGGAGACTATGATGGAGATTGAGACGGTAAGCGATCCGGAGATTCAGACGGT---ATT 830
||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 759 TCCGGAGACTATGATGGAGATTGAGACGGTAAGCGATCCACCGATTCAGATGGTAGGATT 818
Query 831 GGAATTGGGGAAGAAAAAGGTGAAGGAGATGATGTTTAAGTTTACGGATACACATTTGTT 890
||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 819 GGATTTGGGGAAGAGAAAGGTGAAGGAGATGATGTTTAAGTTTACGGATACATATTTGTT 878
Query 891 TGGGATCTCTGGAATGAGCGGTTCAGGGAAAACCACTCTTGCAATAGAGCTTTCAAAG-G 949
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 879 TGGGATCTCTGGAATGAGCGGTTCAGGGAAAACCACTCTTGCAATAGAGCTTTC-AAGAG 937
Query 950 ACGATGATGTTCGAGGACTCTTTAAGAATAAGGTTTTGTTTTTGACTGTGTCACGGTCTC 1009
|||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 938 ACGATGATGTTCGAGGCCTCTTTAAGAACAAGGTTTTGTTTCTGATTGTGTCACGGTCTC 997
Query 1010 CGAATTTTGAGAATTTGGAGTCTTGTATACGAGAATTTCTTTATGATGGAGTTCATCAAC 1069
|||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 998 CGAATTTTGAGAATCTGGAGTTTTGTATACGAGAATTTCTTAATGATGGAGTTCAACAAC 1057
Query 1070 GGAAGCTAGTGATTCTTGATGATGTTTGGACAAGGGAGTCCTTGGACAGGCTGATGTCTA 1129
||||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||||||
Sbjct 1058 GGAAGCTAGTGATCCTTGATGATGTTTGGACAAGGGAATCCTTGGACAAGCTGTTGTCTA 1117
Query 1130 AAATTCGTGGAAGCACTACTTTAGTAGTGTCACGGTCCAAGCTTGCAGATCCTAGAACCA 1189
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1118 AAATTCGTGGAAGCACAACTTTAGTAGTCTCACGGTCCAAGCTTGCAGATCCTAGAACCA 1177
Query 1190 CCTACAATGTGGAATTATTAAAGAAAGATGAAGCAATGTCTCTTTTGTGTCTCTGTGCTT 1249
||||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||
Sbjct 1178 CCTACAATGTGGAATTATTAAAGGAAGATGAAGCAATGTCCCTCTTGTGTCTCTATGCTT 1237
Query 1250 TCGAACAAAAGTCCCCGCCTTCTCCATTCAACAAATATTTGGTGAAGCAGGTTGTTGATG 1309
|||| || |||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 1238 TCGATCATAAGTCCCCGCCTTCTCCATTCAGCAAAAAATTGGTGAAGCAGGTTGTTGATG 1297
Query 1310 AGTGTAAAGGTTTACCTTTATCTTTGAAAGTTCTTGGTGCTTCGTTAAAAAACAAACCTG 1369
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1298 AGTGTAAAGGTTTACCTTTATCTTTGAAAGTTCTCGGTGCTTCTTTAAAAAACAAACCTG 1357
Query 1370 AAAGATATTGGGAAGGCGTAGTGAAGAGGTTATTAAGAGGAGAAGCTGCTGATGAAACTC 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AAAGATATTGGGAAGGCGTAGTGAAGAGGTTATTAAGAGGAGAAGCTGCTGATGAAACTC 1417
Query 1430 ATGAGAGCAGAGTGTTTGCTCATATGGAAGAAAGTCTAGAAAACCTCGACCCGAAAATCC 1489
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1418 ATGAGAACAGAGTGTTTGCTCATATGGAAGAAAGTCTAGAAAACCTCGAGTCGAAAATCA 1477
Query 1490 GAGACTGTTTCTTGGATATGGGTGCTTTCCCTGAAGACAAGAAGATCCCTCTTGATCTTC 1549
|||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct 1478 GAGAGTGTTTCTTGGATATGGGTGCTTTCCCTGAAGGCAAGAAGATCCCTCTTTATGTTC 1537
Query 1550 TCACGAGCGTGTGGGTTGAGAGGCATGATATTGACGAGGAAACTGCGTTTTCCTTTGTTC 1609
|||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1538 TCACCAACGTGTGGGTTGAGAGGCATGATATTGACGAAGAGACTGCGTTTTCCTTTGTTC 1597
Query 1610 TTCGTTTAGCTGACAAGAATCTCCTTACTATAGTGAACAATCCGAGGTTTGGCGATGTGC 1669
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1598 TTCGTTTAGCTGACAAGAATCTCCTGACTATAGTGAAAAATCCAAGGTTTGGCGATGTGC 1657
Query 1670 ACATTGGCTACTATGATGTATTTGTGACGCAACACGATGTTTTGAGAGACCTAGCCCTTC 1729
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1658 ACATTGGCTACTATGATGTATTTGTGACGCAACACGATGTTCTCAGAGACCTAGCCCTTC 1717
Query 1730 ATATGTCCAATCGTGTGGACGTAAATAGGAGAGAGCGGTTATTAATGCCAAAAACAGAGC 1789
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1718 ATATGTCCAATCGTGTGGACGTAAATAGGAGAGAGCGGTTATTAATGCCGAAAAGAGAGC 1777
Query 1790 CAGTGCTTCCAAGAGAATGGGAAAAGAATAAAGATGAGCCATTTGATGCCAAGATAGTTT 1849
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1778 CAATGCTTCCAAGAGAATGGGAAAAGAATAACGATGAGCCATTTGATGCCAAGATAGTCT 1837
Query 1850 CCCTTCATACAGG 1862
|||||||||||||
Sbjct 1838 CCCTTCATACAGG 1850
Score = 1362 bits (737), Expect = 0.0
Identities = 886/957 (93%), Gaps = 13/957 (1%)
Strand=Plus/Plus
Query 1861 GGGGAAATGGATGAAATGAATTGGTTTGACATGGACCTCCCTAAGGCAGAAGTTTTAATA 1920
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1879 GGGGAAATGGATGAAATGGATTGGTTTGACATGGACCTTCCTAAGGCAGAAGTTTTAATA 1938
Query 1921 CTGAACTTCTCTTCGGACAACTACGTCTTGCCACCATTTATTGGTAAGATGAGTAGACTC 1980
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1939 CTGAACTTCTCTTCTGAAAACTACGTCTTGCCACCATTTATTGGTAAGATGAGTAGACTC 1998
Query 1981 AGGGTGCTCGTGATTATCAACAATGGCATGTCTCCTGCGCGTCTACATGGCTTCTCCATC 2040
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1999 AGGGTGCTCGTGATTATCAACAATGGAATGTCTCCTGCGCGTCTACATGGCTTCTCCATC 2058
Query 2041 TTTGCCAATTTGGCCAAACTGAGGAGTCTCTGGCTCAAGAGGGTACATGTCCCTGAACTC 2100
|||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |
Sbjct 2059 TTTGCCAATTTGGCCAAACTAAGAAGTCTCTGGCTCGAGAGGGTACATGTCCCTGAATTT 2118
Query 2101 ACCAGCTGCACCATTCCACTGAAAAACCTGCACAAGATACATCTAATCTTTTGTAAGGTC 2160
|||||| ||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 2119 ACCAGCAGCACCATTCCACTGAAAAAACTGCAAAAGATGCATCTGATCTTTTGTAAGGTC 2178
Query 2161 AAGAACAGCTTTGTTCAGACGTCATTCGACATCTCGA-AAATATTCCCAAGCTTGTCTGA 2219
|| || ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2179 AACAATAGCTTTGATCAGACGTCATTCGACATCTC-ACAAATATTCCCAAGCTTGTCTGA 2237
Query 2220 TCTCACTATTGATCACTGTGATGATCTTTTGGAACTAAAATCCATATTTGGAATAACCTC 2279
||||||||| |||||||||||||||||| ||||| |||| ||||||||||| ||||||||
Sbjct 2238 TCTCACTATCGATCACTGTGATGATCTTGTGGAATTAAACTCCATATTTGGGATAACCTC 2297
Query 2280 TCTCAACTCTCTCAGCATAACCAACTGTCCACGGATTCTTGAATTGCCCAAGAATTTGAG 2339
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||
Sbjct 2298 TCTCAACTCTCTCAGCATAACCAACTGTCCAAGAATTCTTGAACTGCCCAAGAATCTGAG 2357
Query 2340 TAA-CGTACAGTCCCTTGAACGTCTAAGGTTATATGCCTGCCCCGAGCTGATATCCCTCC 2398
||| | ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2358 TAATC-TACAGTCTCTTGAACGTCTAAGGTTATATGCTTGCCCCGAGCTGATATCCCTCC 2416
Query 2399 CGGTCGAAGTTTGTGAGCTGCCATGTCTAAAGTACGTTGACATTTCACAGTGTGTCAGCC 2458
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2417 CGGTCGAAATTTGTGAGCTGCCATGTCTAAAGTACGTTGATATTTCACAGTGTGTCAGCC 2476
Query 2459 TGGTTTCTCTTCCTGAAAAGTTTGGAAAGCTAGGGAGTCTTGAGAAAATTGACATGAGAG 2518
|| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 2477 TGATTTATCTTCCTGAAAAGTTTGGAAAGCTAGGGAAACTTGAGAAAATTGACATGCGAG 2536
Query 2519 AATGCAGTTTATTGGGTTTACCAAGTTCTGTAGCTGCACTTGTGTCTCTACGCCATGTCA 2578
||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 2537 AATGCAGTTTATTGGGTTTACCAAGTTCTGTAGCTGCCCTCGTGTCTCTACGTCATGTCG 2596
Query 2579 TTTGCGATGAGGAGACTTCGTCTATGTGGGAAATGGTCAAGAAGGTGGTTCCTGAACTTT 2638
||||||||||||||||||||||||||||||||| |||||| ||| | ||||| |||||||
Sbjct 2597 TTTGCGATGAGGAGACTTCGTCTATGTGGGAAAAGGTCAAAAAGATTGTTCCGGAACTTT 2656
Query 2639 GCATTGAAGTCGCCAAAAAATGCTTCACCGTGGATTGGCTTGACGATTAGGCTTCTTGTT 2698
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 2657 GCATTGAAGTCGCCAAAAAATGCTTCACCGTTGATTGGCTTGACGATTAGGCTTTTTGAT 2716
Query 2699 CCTTCAAACTCTTGATAACCCCTTGTATTAATCATTGATCAGCAGTAATTAGAGCGAGTT 2758
|| |||||||||| | |||| |||||||||||||||| | ||| | | |||| ||||
Sbjct 2717 CCCTCAAACTCTTAAGAACCTCTTGTATTAATCATTG--C-GCA-TCA---GAGCAAGTT 2769
Query 2759 ATTTGAAGTTTGGAATGTTTCTCTCTATATATAAGATCATTTTTAGCTATCCATCTT 2815
||||||| |||||||||| |||| ||||||||| |||||||||||||||| |||||
Sbjct 2770 ATTTGAACTTTGGAATGT--CTCTATATATATAACATCATTTTTAGCTATCAATCTT 2824
> Ahg487251 jgi|Araly1|487251|fgenesh2_kg.6__385__AT5G04720.1
Length=2605
Score = 1133 bits (613), Expect = 0.0
Identities = 1529/1955 (78%), Gaps = 128/1955 (7%)
Strand=Plus/Plus
Query 829 TTGGAATTGGGGAAGAAAAAGGTGAAGGAGATGATGTTTAAGT-TTACG--GAT-ACACA 884
||||| ||||| |||| ||||||||||||||| ||||||| | | | ||| | | |
Sbjct 569 TTGGATTTGGGAAAGAGCAAGGTGAAGGAGATGTTGTTTAAATCCAATGATGATGAAAGA 628
Query 885 TTTGTTTGGGATCTCTGGAATGAGCGGTTCAGGGAAAACCACTCTTG-CAATAGAGCTTT 943
|| | || ||||| || ||||| |||||||||||||||||||||| ||| |||||||
Sbjct 629 CTT-ATCGGTATCTCAGGGATGAGTGGTTCAGGGAAAACCACTCTTGCCAA-AGAGCTTG 686
Query 944 CAAAGGACGATGATGTTCGAGGACTCTTTAAGAATAAGGTTTTGTTTTTGACTGTGTCAC 1003
|| |||||| || |||||||| | |||| ||| || ||||||||| ||||||||||||
Sbjct 687 CACGGGACGAAGAAGTTCGAGGCCACTTTGGGAACAACGTTTTGTTTCTGACTGTGTCAC 746
Query 1004 GGTCTCCGAATTTTGA-GAATTTGGAGTCTTGTATA-CGAGA-AT-TT-CT--TTATGA- 1055
||||| ||| |||| || || ||| | |||| | || || || || ||||||
Sbjct 747 AATCTCCCAATCTTGAGGAGCTTAGAG-CCCATATATGGGGATATCTTACTAGTTATGAG 805
Query 1056 --TGGAG-T--T--CA----T-C--AA-C--GGAAGCTAGTGATTCTTGATGATGTTTGG 1098
||| | | | || | | || | ||||||||||||| |||||||||||||||
Sbjct 806 GCTGGGGCTGGTGCCACTCTTCCGGAATCTAGGAAGCTAGTGATCCTTGATGATGTTTGG 865
Query 1099 ACAAGGGAGTCCT-TGGA-CAGGCTGATG-TC--TAAAATTCGTGGAAGCACTACT-TTA 1152
|||||||| | || |||| || ||| ||| || ||| |||| ||||| ||| ||| ||
Sbjct 866 ACAAGGGAAT-CTCTGGACCA-GCTCATGTTCGATAATATTCCTGGAACCACAACTCTT- 922
Query 1153 GTAGTGTCACGGTCCAAGCTTGCAGATCCTAGAACCACCTACAATGTGGAATTA-TTAAA 1211
|| || |||||||| || || |||||| ||||| |||| || |||| || ||| | ||
Sbjct 923 GTGGTCTCACGGTCTAAACTCGCAGATTCTAGAGCCACTTATGATGTAGAGTTACTCAAT 982
Query 1212 GAAAGATGAAGCAATGTCTCT-TT-TGTGTCTCTGTGCTTTCGAA-CA-AAAGTCCCCGC 1267
| || | ||||||| |||||| || |||||||| ||||||| || || ||| || ||
Sbjct 983 G-AACACGAAGCAACGTCTCTGTTCTGTGTCTC--TGCTTTC-AACCAGAAA-TCAGTGC 1037
Query 1268 CTTCTCCATTCAACAAATA-TTTGGTGAAGCAGGTTGTTGATGAGTGTAAAGGTTTACCT 1326
|||| ||||| ||| | |||||| ||||||||||||| |||||||||||| |||||
Sbjct 1038 CTTCAGGATTCAGTAAA-AGTTTGGTCAAGCAGGTTGTTGGGGAGTGTAAAGGTCTACCT 1096
Query 1327 TTATCTTTGAAAGTTC-TTGGTGCTTCGTT-AAAAAACAAACCTGAAAGATATTGGGAAG 1384
|| || |||||| || | |||||||| || ||| ||| |||||||| |||||||||||
Sbjct 1097 TTGGCTCTGAAAG-TCATCGGTGCTTCATTGAAAGAAC-GACCTGAAAAATATTGGGAAG 1154
Query 1385 GCGTAGTGA-AGAGGTTATTAAGAGGAGAAGCTGCTGATGAAACTCATGAGAGCAGAGTG 1443
| | ||| | ||||||||| |||||| ||| ||||||||||||| |||||||| |||||
Sbjct 1155 GTGCAGT-AGAGAGGTTATCAAGAGGTGAACCTGCTGATGAAACGCATGAGAGTAGAGTT 1213
Query 1444 TTTGCTCATATGGAAGAAAGTCTAGAAAACCTCGACCCGAAAATCC-GAGACTGTTTCTT 1502
|||||||| || |||| || ||||||||| || ||||| |||| || |||| ||||||||
Sbjct 1214 TTTGCTCAAATCGAAGCAACTCTAGAAAATCTTGACCCTAAAA-CCAGAGAGTGTTTCTT 1272
Query 1503 GGATATGGGTGCTTTCCCTGAAGACAAGAAGATCCCTCTTGATCTTCTCA-CGAGCGTGT 1561
|| | |||||||||||||||||||||||||||||||||||||| |||||| | | |||||
Sbjct 1273 GGTTCTGGGTGCTTTCCCTGAAGACAAGAAGATCCCTCTTGATGTTCTCATCAA-CGTGT 1331
Query 1562 GGGTTGAGAGGCATGATATTGACGAGGAAACTGCGTTTTCCT-TTGTTCTTCG-TTTAGC 1619
|| ||| ||||||| | || || | |||||| |||| || || || || | ||||||
Sbjct 1332 TAGTCGAGTTGCATGATCTCGAGGACGCAACTGC-TTTTGCTGTTATTGTT-GATTTAGC 1389
Query 1620 TGACAAGAATCTCCTTACTATAGTGAACA-ATCCGAGGTTTGGCGATGTGCACATTGGCT 1678
||| ||||||||||||| | ||||| | |||| ||||||||| || || ||| | |||
Sbjct 1390 AAACAGGAATCTCCTTACTCTCGTGAA-AGATCCAAGGTTTGGCCATATGTACACTAGCT 1448
Query 1679 ACTATGATGTATTTGTGACGCAACACGATGTTTTGAGAGACCTAGCCCTTCATATGTC-C 1737
|||||||| ||||||||||||| || |||||| | ||||| |||| |||| | | | |
Sbjct 1449 ACTATGATATATTTGTGACGCAGCATGATGTTCTAAGAGATGTAGCACTTCGTCT-TAGC 1507
Query 1738 AATCGTGTGGAC-GTAAATAGGAGAGAGCGGTTATTAATGCCAAAAACAGAGCCAGTGCT 1796
|||| || ||| ||||||| |||||||| ||||| |||||||||| |||| || | ||
Sbjct 1508 AATCTTG-GGAAAGTAAATAACAGAGAGCGATTATTGATGCCAAAAAGAGAGTCAATACT 1566
Query 1797 TCCAAGAGAATGGGAAAAGAATA-AA-GATGAGCCATTTGATGCCA-AGATAGTTTCCCT 1853
||||||||||||||| | ||| | || |||||| ||| | |||| || |||||||| |
Sbjct 1567 TCCAAGAGAATGGGAGA-GAA-ACAATGATGAGGCATACAAAGCCAGAG-TAGTTTCCAT 1623
Query 1854 TCATACAGGGGAAATGGA-TGAAATGAATTGGTTTGACATGGACCTCCCTAAGGCAGAAG 1912
||| ||||| |||||| | ||| ||| |||||||||||||||| ||||||||||| ||||
Sbjct 1624 TCACACAGGAGAAATG-ACTGAGATGGATTGGTTTGACATGGAACTCCCTAAGGCTGAAG 1682
Query 1913 TTTTAATACTGA-ACTTCTCTTCGGACAACTACGTCTTGCCACCATTT-ATTGGTAAGAT 1970
|||| ||||| | |||| ||||| || || || || ||||| || ||| |||| ||||||
Sbjct 1683 TTTTGATACT-ACACTTTTCTTCTGAAAAGTATGTGTTGCCTCC-TTTCATTGCTAAGAT 1740
Query 1971 GAGTA-GACTCAGGGTGCTCGTGATTATCAACAATGGCATGTCTCCTGCGCGTCTACATG 2029
| | | | || |||| ||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1741 GGGCAAG-CTTAGGGCGCTCGTGATCATCAACAATGGTATGTCTCCAGCGCGTCTACATG 1799
Query 2030 GCTTCTCCATCTTTGCCAATTTGGCCAAACTGAGGAGTCTCTGGCTCAAGAGGGTACATG 2089
||||||||||||| |||||||||||||||| | |||||||||||| ||||||| ||||
Sbjct 1800 ACTTCTCCATCTTTACCAATTTGGCCAAACTCAAGAGTCTCTGGCTTGAGAGGGTTCATG 1859
Query 2090 TCCCTGAACTCACCAGCTGCACCATT-CCACTGAAAAACCTGCACAAGATA-CATCTAAT 2147
||||||||||| | ||| | || | | ||| || ||||||| |||||| | | ||| ||
Sbjct 1860 TCCCTGAACTCTCTAGCAGTAC-AGTGCCATTGCAAAACCTCCACAAGCTGTC-TCTCAT 1917
Query 2148 CTTTTGTAAGGTCAAGAAC-AG-CTTTGTTCAGAC-GTCATTCGACATCT-CGAAAATAT 2203
||| || ||| |||| | | || ||| | |||||| | | | ||||| | | |||| |
Sbjct 1918 CTTCTGCAAGATCAACA-CTAGTCTT-GATCAGACAGA-AGTAGACAT-TGCCCAAATCT 1973
Query 2204 TCCCAAGCTTGTCTGATCTCACTATTGATCACTGTGATGATCTTTTGGAACTAAAATCCA 2263
|||||| |||||||||||||| || ||||| || ||||||||| |||||||| || |
Sbjct 1974 TCCCAAAATTGTCTGATCTCACAATAGATCATTGCGATGATCTTGTGGAACTACCTTCGA 2033
Query 2264 T-AT-T-TGGAATAACCTCTCTCAACTCTC-TCAGCATAACCAACTGTCCACGGATTCTT 2319
|| | ||| || |||||||||||||| | |||||||||| || ||||| || || |
Sbjct 2034 CCATCTGTGGTATCACCTCTCTCAACTC-CATCAGCATAACAAATTGTCCCCGCAT-CAA 2091
Query 2320 -GAATTGCCCAAGAATTTGAGTAA-CGTACAGTCCCTTGAACGTCTAAGGTTATATGCCT 2377
|||||||| ||| || | ||||| | || | | |||| | | ||| ||| |||| || |
Sbjct 2092 AGAATTGCCTAAGTATCTCAGTAAGC-TAAAATTCCTTCAGCTTCTGAGGCTATACGCTT 2150
Query 2378 GCCCCGAGCTG-ATATCCCTCCCGGTCGAAGTTTGTGAGCTGCCATG-TCTAAAGTACGT 2435
|||| |||||| | ||| || || || ||| | |||||||||||| | | |||||||| |
Sbjct 2151 GCCCTGAGCTGCA-ATCTCTGCCAGTAGAACTCTGTGAGCTGCCAAGAT-TAAAGTACCT 2208
Query 2436 TGACATTTCACAGTGTGTCAGCCTG-GTTTCTCTTCCTGAAAAGTTTGGAAAGCT-AGGG 2493
|||||| || || |||||||||||| ||| ||||||| |||||| | |||||| | | |
Sbjct 2209 TGACATCTCTCAATGTGTCAGCCTGAGTT-CTCTTCCGGAAAAGATAGGAAAGGTTAAG- 2266
Query 2494 AGTCTTGAGAAAATTGACATGAGAGAATGCAGTTTATTGGGTTTACCAAGTTCTGTAGCT 2553
| ||||||||||| |||||||| |||||||| |||| | ||||||| |||| | |
Sbjct 2267 ACACTTGAGAAAATCGACATGAGGGAATGCAGCTTATCAAGCATACCAAGCTCTGCGGTT 2326
Query 2554 GCACTTGTGT-CTCTACGCCATGTCATTTGCGAT-GAGGAGACTTCGTCTATGTGGGAAA 2611
|| ||| | ||||||||||||| || |||||| ||| || ||| || ||||||||||
Sbjct 2327 TCA-TTGACTTCTCTACGCCATGTAATATGCGATAGAG-AGGCTTTGTGGATGTGGGAAA 2384
Query 2612 TGGTCAAGAAGGTGGTTCCTGAACTTTGCATTGAAG-TCGCCAAAAAATGCTT-CACCGT 2669
|||| |||||| ||| | | |||| || |||||| | || |||||| ||| || |||
Sbjct 2385 AGGTCGAGAAGGCCGTTACAGGACTTCGCGTTGAAGCT-GCGGAAAAAT-CTTTCAGCGT 2442
Query 2670 GGATTGGCTTGACGATTAGGCTTCTTG-TTC-CTT 2702
||||||||| ||||| |||| |||||| ||| |||
Sbjct 2443 GGATTGGCTCGACGAGTAGG-TTCTTGATTCTCTT 2476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106233693305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5