BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33590.1
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922451 jgi|Araly1|922451|scaffold_103732.1 1997 0.0
Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431 874 0.0
Ahg922460 jgi|Araly1|922460|scaffold_103741.1 503 2e-141
Ahg922461 jgi|Araly1|922461|scaffold_103742.1 440 1e-122
> Ahg922451 jgi|Araly1|922451|scaffold_103732.1
Length=1479
Score = 1997 bits (1081), Expect = 0.0
Identities = 1338/1464 (91%), Gaps = 10/1464 (1%)
Strand=Plus/Plus
Query 5 CACCACCATGAACTCTTCCTT-TACTCTCTTC-ATCTTTACCTTCGTCATCTTCCTCCAA 62
||||||||||||||||| ||| ||||||| | || ||||||||||| ||||| ||||
Sbjct 19 CACCACCATGAACTCTT-CTTGTACTCTC-ACTATTTTTACCTTCGTTATCTTTCTCCGG 76
Query 63 TGTCTAAATCCCACCGGAGCTGCCACGTGTCATCCTGATGATGAAGCGGGTCTTCTAGCT 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TGTCTAAATCCCACCGGAGCTGCCACGTGTCATCCTGATGATGAAGCGGGTCTTCTAGCT 136
Query 123 TTCAAAGCGGGTATAACCCGAGATCCTTCGGGTATTCTCAGTTCTTGGAAGAAAGGTACC 182
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 137 TTTAAAGCGGGTATAACCCGAGACCCTTCGGGTATTCTCAGTTCTTGGAAGAAAGGTACT 196
Query 183 GCTTGTTGTTCTTGGAACGGTGTCACTTGTCTCACCACTGACCGTGTCTCTGCACTCTCT 242
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 197 GCTTGTTGTTCTTGGAACGGTGTCACTTGTCTCACCACTGACCGCGTCTCCGCACTCTCT 256
Query 243 GTCGCTGGACAAGCCGATGTTGCTGGAAGCTTCCTCTCCGGCACTCTCTCGCCGTCGTTG 302
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 257 ATCGCTGGACAAGCCGATGTTGCGGGAAGCTTCCTCTCCGGCACTCTCTCGCCGTCGCTA 316
Query 303 GCTAAACT-CAAGCACCTTGATGGGATTTACTTCACCGATCTCAAGAACATCACTGGTTC 361
|||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GCTAAACTCCAA-CACCTCGATGGGATTTACTTCACCGATCTCAAGAACATCACTGGTTC 375
Query 362 TTTTCCTCAATTCCTTTTCCAATTACCAAATCTTAAGTACGTATACATTGAGAATAACCG 421
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 376 TTTTCCTCAATTCCTTTTCCAATTACCAAATCTTAAGTTCGTTTACATTGAGAATAACCG 435
Query 422 TCTCTCTGGTACTCTTCCGGCTAACATCGGTGCGCTAAGCCAGCTTGAAGCGTTCAGCCT 481
||||| ||| ||||||||| |||||||||| | || |||||||| ||||||||||| ||
Sbjct 436 CCTCTCCGGTCCTCTTCCGGTTAACATCGGTTCTCTTAGCCAGCTCGAAGCGTTCAGTCT 495
Query 482 CGAGGGAAACCGGTTCACCGGTCCGATCCCGAGCTCGATATCTAATTTGACTCTGTTAAC 541
| |||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||
Sbjct 496 CCAGGGAAACCGGTTCACCGGTCCAATCCCAAGCTCGATTTCTAATTTGACTCGGTTAAC 555
Query 542 TCAACTCAAACTCGGCAATAATCTCCTAACCGGAACTATACCGTTAGGGGTCGCTAATCT 601
|||||||||||||| | ||||||||||||||| ||||| || ||||| | || |||||
Sbjct 556 ACAACTCAAACTCGGTAGTAATCTCCTAACCGGCACTATTCCCTTAGGAATTGCCAATCT 615
Query 602 CAAGCTCATGTCGTATCTCAACCTTGGAGGTAACCGTCTCACTGGAACCATTCCAGATAT 661
|||||||||||| ||||||||||||||||||||||| |||||||| || || || || ||
Sbjct 616 CAAGCTCATGTCCTATCTCAACCTTGGAGGTAACCGGCTCACTGGCACTATCCCGGACAT 675
Query 662 TTTCAAATCCATGCCAGAGCTCCGATCTTTAACTCTCTCCCGCAACGGATTCTCCGGGAA 721
||||||||||||||| || || ||||| ||||||||||||| ||||||||||||||||||
Sbjct 676 TTTCAAATCCATGCCGGAACTTCGATCATTAACTCTCTCCCACAACGGATTCTCCGGGAA 735
Query 722 TCTTCCTCCGTCCATTGCATCACTCGCACCGATTCTTAGGTTCCTCGAGTTAGGCCATAA 781
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 736 TCTTCCTCCGTCCATTGCATCACTCGCACCGATTCTCAGGTTCCTCGAGTTAGGCCATAA 795
Query 782 CAAACTCTCCGGGACGATTCCAAACTTTTTATCAAACTTCAAGGCGCTCGACACATTGGA 841
||| ||||||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 796 CAATCTCTCCGGGACAATCCCGAACTTCTTATCAAACTTCAAGGCGCTCGACACATTGGA 855
Query 842 TCTCTCCAAGAATCGGTTCTCGGGTGTCATACCGAAGAGTTTCGCCAATCTGACCAAGAT 901
||||||||||||||||||||| || ||| | || ||||||||||| ||||||||||| ||
Sbjct 856 TCTCTCCAAGAATCGGTTCTCAGGAGTCTTGCCAAAGAGTTTCGCAAATCTGACCAAAAT 915
Query 902 ATTCAATCTTGATCTCTCCCATAATCTTCTAACCGATCCATTCCCTGTCTTGAACGTTAA 961
|||||||| ||||| | || ||||||||||| ||||||||||||||||||||||||||
Sbjct 916 CTTCAATCTCAATCTCGCTCACAATCTTCTAACTGATCCATTCCCTGTCTTGAACGTTAA 975
Query 962 AGGCATTGAATCTTTGGATCTTTCTTACAACCAGTTTCACTTGAATACGATCCCGAAATG 1021
||| || |||||| |||||||||| |||||||| ||||||||||| || || || |||||
Sbjct 976 AGGGATAGAATCTCTGGATCTTTCATACAACCAATTTCACTTGAACACAATTCCTAAATG 1035
Query 1022 GGTGACTTCGTCGCCGATCATCTTCTCGTTGAAGCTAGCAAAATGCGGGATCAAGATGAG 1081
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GGTGACTTCGTCACCGATCATCTTCTCGTTGAAGCTAGCAAAATGCGGGATCAAGATGAG 1095
Query 1082 CTTAGACGATTGGAAGCCAGCGCAAACATTCTACTATGATTTCATCGATCTGTCGGAAAA 1141
|||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||||
Sbjct 1096 TTTAGACGATTGGAAGCCAGCACAAACATACTACTACGATTTCATCGATTTGTCGGAAAA 1155
Query 1142 CGAGATCACAGGGAGTCCAGCAAGGTTCTTGAACCAAACAGAGTATCTAGTGGAGTTCAA 1201
||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1156 CGAGATCTCAGGGAGTCCTGCAAGGTTCTTGAACCAAACAGAGTTTCTAGTGGAGTTCAA 1215
Query 1202 GGCAG-CGGGTAACAAACTACGATTCGATATGGGGAAGCTAACGTTTGCAAAGACGCTGA 1260
||| | |||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1216 GGC-GTCGGGGAACAAACTCCGATTCGATATGGGGAAGCTAACGTTCGCAAAGACGCTGA 1274
Query 1261 CAACTTTAGATATATCAAGGAACTTGGTATTTGGGAAGGTGCCGGCAATGGTGGCTGGAC 1320
||| || ||| ||||||| ||||||||||| ||||||||||| || | ||||| || |
Sbjct 1275 AAACCTTGGATCTATCAAGAAACTTGGTATTCGGGAAGGTGCCAGCGACAGTGGCCGGGC 1334
Query 1321 TAAAGACATTGAACGTGAGTCACAACCATCTTTGTGGAAAGCTTCCAGTAACAAAGTTCC 1380
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 1335 TAAAGACATTGAACGTGAGTCACAACCAACTTTGCGGAAAGCTTCCGGTGACAAAGTTCC 1394
Query 1381 CGGCCAGTGCGTTTG-TGGGTAATGACTGTCTTTGCGGCTCTCCTCTTTCTCCTTGTAAA 1439
||||||| ||||||| ||| ||| |||||||||||||||||||| ||| |||||||||||
Sbjct 1395 CGGCCAGCGCGTTTGCTGG-TAACGACTGTCTTTGCGGCTCTCCACTTCCTCCTTGTAAA 1453
Query 1440 GCTTAAGCGGCAAGAAAGCTACAA 1463
||||||||||||||||| ||||||
Sbjct 1454 GCTTAAGCGGCAAGAAAACTACAA 1477
> Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431
Length=2796
Score = 874 bits (473), Expect = 0.0
Identities = 1115/1414 (79%), Gaps = 88/1414 (6%)
Strand=Plus/Plus
Query 21 TCCTTTACTCTCTTCATCTTTACCTTCGTCATCTTCCTCCAATGTCTAAATCCCACCGGA 80
||||| ||||||||||||||| | || | ||||| || || | | ||| | | || |||
Sbjct 13 TCCTTCACTCTCTTCATCTTTGCGGTCATTATCTTTCTTCAGTCTTTAAGTTCAACGGGA 72
Query 81 GCTGCCACGTGTCATCCTGATGATGAAGCGGGTCTTCTAGCTTTCAAAGCGGGTATAACC 140
||| |||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||
Sbjct 73 GCTACCACGTGTCATCCTGATGATGAGGCGGGTCTTTTAGAATTCAAATCGGGTATAACT 132
Query 141 CGAGATCCTTCGGGTATTCTCAGTTCTTGGAAGAAAGGTACCGCTTGTTGTTCTTGGAAC 200
| ||||||||| || |||||||| ||||||| |||| ||| |||| || || |||||
Sbjct 133 CAAGATCCTTCCGGCATTCTCAGCTCTTGGACGAAAAATACTTCTTGCTGCTCGTGGAAA 192
Query 201 GGTGTCACTTGTCTCACCA-CTGACCGTGTCTCTGC-ACTCTCTGTCGCT-G-GACA-AG 255
||| ||||||| |||| || | ||||||||| | | || ||| | | || | | |
Sbjct 193 GGTATCACTTGCCTCAACAGC-GACCGTGTCAC--CAAC-CTC-GAC-CTAGTGGGATTT 246
Query 256 CCGATGTTGCTGGAA-GCTTCCTCTCCGGCACTCTCTCGCCGTCGTTGGCTAAAC-TCAA 313
| | ||| ||| ||| ||||| |||||||| |||||| |||| |||| || |
Sbjct 247 TTAAAAAAACCCGAACGCTCCCTTTCCGGTACTCTCTCACCGTCGCTGGCCAAACTTC-A 305
Query 314 GCACCTTGATG-GGATTTA-CTTCACCGATCTCA--AGAACATCACTGGTTCTTTTCCTC 369
|||||| | | || ||| ||| | || ||| |||||||||||| ||||||||
Sbjct 306 GCACCTCAACGTGG--TTAGCTT-A-GGAGATCATGGGAACATCACTGGATCTTTTCC-A 360
Query 370 AA-TTCCTTTTCCAATTACCAAATCTTAA-GTACGTAT-ACATTGAGAATAACCGTCTCT 426
|| |||||| || |||||||||| | ||| |||||| | |||| |||||||||||||||
Sbjct 361 AAGTTCCTTCTCAAATTACCAAAGC-TAAGGTACGT-TGACATCCAGAATAACCGTCTCT 418
Query 427 CTGGTACTCTTCCGGCTAACATCGGTGCGCTAAGCCAGC-TT-GAAGC-GTTC-AGCCTC 482
| ||| | ||||| | |||||||| | ||||| || | || ||| | ||| | ||
Sbjct 419 CCGGTCCCCTTCCAACAAACATCGGCGTGCTAA-ACA-CGTTAGAA-CAATTCTTTCTTC 475
Query 483 GAGGGAAACCGGTTCACCGGTCCGATCCCGAGCTCGATATCTAATTTGACTCTGTTAACT 542
||||||| ||||||||||||||||||||| ||||| || ||||| || | |||| ||
Sbjct 476 -AGGGAAATAAGTTCACCGGTCCGATCCCGAGTTCGATTTCCAATTTAACCCGGTTATCT 534
Query 543 CAACTCAAACTCGGCAA-TAATCTCCTAACCGGAACTATACCGTTAGGGGTCGCTAATCT 601
| |||| |||| | ||||||| ||||||||||||||||| |||| | ||||| ||
Sbjct 535 TATCTCATTTTCGG-AGGTAATCTCTTAACCGGAACTATACCGGTAGGACTTGCTAACCT 593
Query 602 CAAGCTCATGTC-GTATCT--CAACCTTGGAGGTAACCGTCTCACTGGAACCATTCCAGA 658
|||||||||| | | |||| || | | || | ||||| ||| | || ||| | |||||
Sbjct 594 CAAGCTCATG-CAGCATCTGGCA-C-TCGGCGACAACCGCCTCTCAGGCACCGTCCCAGA 650
Query 659 TATTTTCAAATCCATGCCAGA-GCTCCGATCTT-TA-ACTCTCTCCCGCAACGGATTCTC 715
|||||| |||| ||| | | |||| || || || | |||||||||||| ||||||||
Sbjct 651 AATTTTCGAATCAATGAC-GTTGCTCAAAT-TTCTAGA-TCTCTCCCGCAATGGATTCTC 707
Query 716 CGGGA-ATCTTCCTCCGTCCATTGCATCACTCGCACCGATTCT--TAGGTTCCTCGAGTT 772
|||| | ||||||| ||||||||| ||||||||||||| || ||| |||| || |
Sbjct 708 TGGGAGA-CTTCCTCTGTCCATTGCGTCACTCGCACCGACACTCCTAGC--CCTCAAGCT 764
Query 773 -AGGCCATAACAAACTCTCCGGGACGATTCCAAACTTTTTATCAA-ACTTCAAG-GCGCT 829
|| ||| ||||| ||||| ||| |||| || ||| | |||||| | ||||| | |||
Sbjct 765 GAG-CCAGAACAATCTCTCGGGGGCGATCCCGGACTATATATCAAGA-TTCAACAG-GCT 821
Query 830 CGACACA-TTGGATCTCTCCAAGAATCGGTTCTCGGGTGTCATACCGAAGAGTTTCGCCA 888
||| | | ||||||||||||||||| |||||||| ||||| |||||||| |||||| ||
Sbjct 822 CGAAA-AGTTGGATCTCTCCAAGAACCGGTTCTCAGGTGTTGTACCGAAGGGTTTCGTCA 880
Query 889 ATCTGACCAAGAT-ATTCAATCTTGATCTCTCCCATAATCTTCTAACCGATCCATTCCCT 947
|| ||||||| || | |||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 881 ATATGACCAATATTAA-CAATCTTGATCTCTCCCACAATCTTCTAACTAATCAATTCCCT 939
Query 948 GTCTTGAACGTTAA-AGGCATTGAATCT-TTGGATCTTTCTTACAACCAGTTTCA-CTTG 1004
| ||||||||||| | ||| |||| | ||| |||| || |||||||| ||||| || |
Sbjct 940 GAATTGAACGTTAACAC-CATCGAATATCTTG-ATCTCTCGTACAACCAATTTCAGCTGG 997
Query 1005 AATACGATCCCGA-AATGGGTGACTTCGTCGCCGA-TCATCTTCTCGTTGAAGCTAGCAA 1062
|| ||||| || | |||||||||| |||| ||||| || |||||| ||||||||||||||
Sbjct 998 AA-ACGATTCC-ACAATGGGTGACATCGTTGCCGAGTC-TCTTCTTGTTGAAGCTAGCAA 1054
Query 1063 AATGCGGGATCAAGATGAGCTTAGACGATTGGAAGCCAGCGCAAACATTCTACTATGATT 1122
|||| |||||||||||||||||||||||||||||||||||| || | || ||||| |||
Sbjct 1055 AATGTGGGATCAAGATGAGCTTAGACGATTGGAAGCCAGCGGAACCCTTGTACTACCATT 1114
Query 1123 TCATCGATCTGTCGGAAAACGAGATCACAGGGAGTCCAGCAAGGTTCTTGAACCAAACA- 1181
||||||||||||| ||||||||||| ||||||||| || ||||||||||||||| |||
Sbjct 1115 ACATCGATCTGTCGAAAAACGAGATCTCAGGGAGTCTAGAAAGGTTCTTGAACCAGACAT 1174
Query 1182 GAGTATCTAG-TGGAGTT-CAAGGCAGCGGGTAACAAACTACGATTCGATATGGGGAAGC 1239
| |||||| | ||||||| | ||| ||||| |||||||| | ||||||||||||||| |
Sbjct 1175 G-GTATCT-GCTGGAGTTTCG-GGCGGCGGGGAACAAACTCCAATTCGATATGGGGAA-C 1230
Query 1240 T--AACGTTTGCAAAGACGCTGACAACTTTAGATATATCAAGGAACTTGGTATTTGGGAA 1297
| || |||||||| |||||| | ||| | ||| | ||||||||||||||||| ||||
Sbjct 1231 TTGAA-GTTTGCAAGGACGCTAAAAACCCTGGATCTTTCAAGGAACTTGGTATTCGGGAT 1289
Query 1298 GGTGCCGGCAATGGTGGCTGGACTAAAGACATTGAACGTGAGTCACAACCATCTTTGTGG 1357
||||||||| ||||| ||||| || ||| | ||||| ||||||| ||||||||||| ||
Sbjct 1290 GGTGCCGGCGATGGTAGCTGGTCTGCAGAAACTGAACTTGAGTCAAAACCATCTTTGCGG 1349
Query 1358 AAAGCTTCCAG-TAACAAAGTTCCCGGCCAGTGC 1390
||||||||||| || |||||||||||||||||||
Sbjct 1350 AAAGCTTCCAGCTA-CAAAGTTCCCGGCCAGTGC 1382
> Ahg922460 jgi|Araly1|922460|scaffold_103741.1
Length=1403
Score = 503 bits (272), Expect = 2e-141
Identities = 678/865 (78%), Gaps = 64/865 (7%)
Strand=Plus/Plus
Query 618 CTCAACCTTGGAGGTAACCGTCTCACTGGAACCATTC-CAGATAT-TTTCAAATCCATG- 674
||||| ||||| || ||||| ||| |||| |||| || ||||||| ||| ||| |||||
Sbjct 558 CTCAATCTTGGCGGCAACCGCCTCTCTGGCACCA-TCTCAGATATATTT-AAACCCATGA 615
Query 675 CCAGAGCTCCGATC-T-TTAACTCTCTCCCGCAACGGATTCTCCGGGAATCTTCCTCCGT 732
| | | |||| | | | || | ||||||||||||||||||||| ||||| |||||||| |
Sbjct 616 CGA-ACCTCC-AACATCTTGA-TCTCTCCCGCAACGGATTCTCTGGGAAACTTCCTCCAT 672
Query 733 CCATTGCATCACTCGCACCGATTCTTAGGT-TCCTCGAGT-TAG-GCCATAACAAACTCT 789
| || |||| || ||||||| || | | | ||||| | | | |||| ||||| ||||
Sbjct 673 CGTTTTCATCGCTTGCACCGACCCTCAAATAT-CTCGA-TCT-GAGCCAGAACAATCTCT 729
Query 790 CCGGG-ACGATTCCAAACTTTTTATCAA-ACTTCAAGGCGCTCGACACATTGGATCTCTC 847
|||| |||||||| ||| |||||||| | ||| || |||| |||||||| ||||||
Sbjct 730 -CGGGAACGATTCCGGACTATTTATCAAGA-TTCGAGACGCTTTCCACATTGGTTCTCTC 787
Query 848 CAAGAATCGGTTCTCGGGTGTCATACCGAA-GAGTTTCGCCAATCTGACCAAGATA-TT- 904
|||||||| || |||||| || | || || ||||||||| ||| | ||| || || ||
Sbjct 788 CAAGAATCAGTACTCGGGGGTTGTGCC-AACGAGTTTCGCTAATTTAACC-AG-TATTTA 844
Query 905 CAATCTTGATCTCTCCCATAATCTTC-TAACCGATCCATTCCCTGTCTTGAACGTTA-AA 962
| |||| ||||||||||| |||| || |||||| |||||||| || |||||| | | |
Sbjct 845 CTATCTCGATCTCTCCCACAATC-TCTTAACCGGTCCATTCCATGCCTTGAA-G--AGTA 900
Query 963 GGCAT-TG-AATCTTTGGATCTTTCTTACAACCAGTTTCACTTGAATACGATCCCGAAAT 1020
|||| | ||| || ||||| || |||||||| ||| || |||| || || ||| |||
Sbjct 901 -GCATCGGCTATC-TT-GATCTATCGTACAACCAATTTAACCTGAAAACCATTCCGGAAT 957
Query 1021 GGGTGACTTCGTCGCCGA-TCATCTTCTCGTTGAAGCTAGCAAAATGCGGGATCAAGATG 1079
||||||| |||||| ||| | | | ||| | ||| | || |||||| | |||||||||
Sbjct 958 GGGTGACCTCGTCGACGAGT-TTGTACTCACTAAAGTTGGCTAAATGCAGTATCAAGATG 1016
Query 1080 AGCTT-AGACGATTGGAAGCCAGCGCAA-A-C--ATTCTACTATGATTTCATCGATCTGT 1134
| ||| || |||||||| ||||| | || | | ||| | | | || |||||||||||
Sbjct 1017 AACTTAAG-CGATTGGAGGCCAGTG-AAGACCAAATTGTTC-A--ATAACATCGATCTGT 1071
Query 1135 CGGAAAACGAGATCACAGGGAGTCCAGCAAGGTTCTTGAACCAA-ACAGAGTATCTAGTG 1193
| ||||||||| || ||||||||||| || ||||| | || ||| || ||| ||||| ||
Sbjct 1072 CCGAAAACGAGTTCTCAGGGAGTCCAACATGGTTCCT-AAACAAGACGGAGGATCTATTG 1130
Query 1194 GAGTTCAAGGCAG-CGGGTAACAAACTACGATTCGATATGGGGAAGCTAACGTTT-GCAA 1251
|||||| |||| | |||| |||||||| | ||| || ||||||||| | | |||| ||||
Sbjct 1131 GAGTTCCAGGC-GTCGGGAAACAAACTCCAATTTGACATGGGGAAGTTGA-GTTTCGCAA 1188
Query 1252 AGACGCTGACAACT-TTAGATATATCAAGGAACTTGGTATTTGGGAAGGTGCC--GG-CA 1307
|| | || | || | || ||| ||||||||||||||||||||||||||||||| || ||
Sbjct 1189 AGTCACTTAGAA-TCTTGGATCTATCAAGGAACTTGGTATTTGGGAAGGTGCCATGGACA 1247
Query 1308 ATGGTGGCTGGACTAAAGACATTGAACGTGAGTCACAACCATCTTTGTGGAAAGCTTCCA 1367
| ||||| ||| |||| | | || ||||||| || ||||||||||||||||||||
Sbjct 1248 --G-TGGCTAAACTGAAGAAACTAAATTTGAGTCAAAATCATCTTTGTGGAAAGCTTCCG 1304
Query 1368 GTAACAAAGTTCCCGGCCAGTGCGTTTGTGGGTAATGACTGTCTTTGCGGCTCTCCTCTT 1427
|| ||||||||||||||||| ||||||| |||||| ||||||||||| |||||||| |||
Sbjct 1305 GTGACAAAGTTCCCGGCCAGCGCGTTTGCGGGTAACGACTGTCTTTGTGGCTCTCCACTT 1364
Query 1428 TCTCCTTGTAAAGCTTAAGCGGCAA 1452
||||||||||||||||| |||||||
Sbjct 1365 TCTCCTTGTAAAGCTTA-GCGGCAA 1388
> Ahg922461 jgi|Araly1|922461|scaffold_103742.1
Length=1413
Score = 440 bits (238), Expect = 1e-122
Identities = 658/855 (77%), Gaps = 51/855 (6%)
Strand=Plus/Plus
Query 630 GGTAACCGTC-TCACTGGAACCATTCCAGATATTTTCAAATCCATGCCAGAGCTCCGA-T 687
|||||||| | | |||| | ||| || ||||| ||||||||||||| | | |||| | |
Sbjct 583 GGTAACCG-CTTTTCTGGCATCATCCCTGATATATTCAAATCCATGCGACAACTCC-ATT 640
Query 688 CT-TTAACTCTCTCCC-GCAACGGATTCTCCGGGAATCTTCCTCCGTCCATTGCATCACT 745
| | | |||||||| | ||| || |||| || || |||||| | || |||||||| ||
Sbjct 641 ATCTCGA-TCTCTCCCAG-AACAGAATCTCTGGAAAACTTCCTTCATCGATTGCATCTCT 698
Query 746 CGCACCGATTC-TTAGGTTCCTCGAGTTAGGCCATAACAAACTCTCCGGGACGATTCCAA 804
||||||| || || || | || ||| | ||||| ||||| || || ||||| || |||
Sbjct 699 TGCACCGACTCTTTGGGCT-CTTGAGGTGGGCCAGAACAATCTATCGGGGACTATCCCAG 757
Query 805 ACTTTTTATC-AAACTTCAAGGCGCTCGACACATTGGATCTCTCCAAGAATCGGTTCTCG 863
||| |||||| | | ||| | || || | |||| ||||||||| |||| | | | |
Sbjct 758 ACTATTTATCGAGA-TTCGA-GCTCTTG--TCATTAAATCTCTCCAGGAATTGCTACACA 813
Query 864 GGTGTCATACCGAAGAGTTTCGCCAATCTGACCAAGA-TATT-CAATCTTGATCTCTCCC 921
|||||| | |||| ||||||| ||||||| | | ||| | || |||||| ||||||||||
Sbjct 814 GGTGTCGTGCCGATGAGTTTCACCAATCTTA-CTAGACT-TTACAATCTCGATCTCTCCC 871
Query 922 ATAATCTTCTAACCGATCCATTCCCTGTCTTGAACGT--TAAAGGCATTGAATCTTTGGA 979
| |||| |||||| | |||| |||||||| ||||| | | || ||| |||| | | |
Sbjct 872 ACAATCATCTAACTGGTCCACTCCCTGTCATGAAC-TCCT-CAGACATAGAATATCTACA 929
Query 980 TCTTTCTTACAACCAG-TTTCA-CTTGAATA-CGA-TCCCGAAATGGGTGACTTCGTCGC 1035
||| || ||||||| | ||||| ||| || | | | |||| ||||||||||| ||||||
Sbjct 930 TCTCTCGTACAACC-GATTTCACCTT-AA-AGCAATTCCC-AAATGGGTGACCTCGTCGA 985
Query 1036 CGATCATCTTCTCGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTTAGACGATTGGA 1095
| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 986 GGCTCATGTACTCGTTGAAGCTAGCAAAATGTGGGATCAAGATGAGCTTAGACGATTGGA 1045
Query 1096 AGCCAGCGCAAACATT-C-TACTATGATTTCATCGATCTGTCGGAAAACGAGATCACAGG 1153
||||| || | || | ||| || | ||| ||| |||| |||||| | ||| ||||
Sbjct 1046 AGCCATA-CAG-CTTTTCGTACAATCA---CATGGATTTGTCAGAAAACAAAATCTCAGG 1100
Query 1154 GAGTCCAGCAAGGTTCTTGAACCAA-ACAGAGTATCT-AGTGGAGTTCAAGGCAGCGGGT 1211
||||||||||||||| |||||| || | | | | | | || ||||| | ||||||||
Sbjct 1101 GAGTCCAGCAAGGTTTTTGAAC-AAGATGGCTTTTTTGACTG-AGTTCCACGCAGCGGGG 1158
Query 1212 AACAAACTACGATTCGA-TATGGGGAAGCT-AACGTTTGCAAAGACGCT-GACAACTTTA 1268
|||||||| |||||||| | ||||||| | || |||| | || |||||| |
Sbjct 1159 AACAAACTTCGATTCGACT-TGGGGAAACAGAAT-TTTGGGATCTT-CTTGACAACCCTG 1215
Query 1269 GATATATCAAGGAACTTGGTATTTGGGAAGGTGCCGGCAATGGTGG-CTGGACTAAAGAC 1327
||| | |||||||||||| |||||||||| || || || | | || | | | | ||||
Sbjct 1216 GATCTGTCAAGGAACTTGATATTTGGGAACGTACCCGCGACGCTGATCAG-ATTGCAGAC 1274
Query 1328 ATTGAACGTGAGTCACAACCATCTTTGTGGAAAGCTTCCAGTAACAAAGTTCCCGGCCAG 1387
||||||| ||||||| || |||||||| ||||||||||| || |||||||||||||||||
Sbjct 1275 ATTGAACTTGAGTCAAAATCATCTTTGCGGAAAGCTTCCGGTGACAAAGTTCCCGGCCAG 1334
Query 1388 TGCGTTTGTGGGTAATGACTGTCTTTGCGGCTCTCCTCTTTCTCCTTGTAAAGCTTAAGC 1447
||||||| |||||| |||||||||||||||| ||| |||| ||| ||||||||||| |
Sbjct 1335 CGCGTTTGCGGGTAACGACTGTCTTTGCGGCTTTCCACTTTATCCGTGTAAAGCTTAGG- 1393
Query 1448 GGCAAGAAAGCTACA 1462
||||| ||| |||||
Sbjct 1394 GGCAATAAAACTACA 1408
Score = 303 bits (164), Expect = 2e-81
Identities = 444/574 (77%), Gaps = 39/574 (7%)
Strand=Plus/Plus
Query 8 CACCATGAACTC---TTCCTTTACTCTCTTCATCTTT-AC-C-TTCGTCATCTTCCTCCA 61
||| |||||||| |||||| |||||||||||||| | | || | ||||| ||||
Sbjct 18 CACAATGAACTCTTATTCCTTCCCTCTCTTCATCTTTGTCGCGGTCTTTATCTTTCTCCG 77
Query 62 ATGTCTAAATCCCACCGGAGCTGCCACGTGTCATCCTGATGATGAAGCGGGTCTTCTAGC 121
||| ||| | |||| ||||||||||| |||||||||||||| || || |||||| ||||
Sbjct 78 GTGTTTAAGTTCCACGGGAGCTGCCACATGTCATCCTGATGACGAGGCAGGTCTTTTAGC 137
Query 122 TTTCAAAGCGGGTATAACCCGAGATCCTTCGGGTATTCTCAGTTCTTGGAAGAAAGGTAC 181
||||||| | |||||||||| |||||||| |||||||||||| || ||||||||| ||||
Sbjct 138 TTTCAAATCAGGTATAACCCAAGATCCTTTGGGTATTCTCAGCTCCTGGAAGAAAAGTAC 197
Query 182 -CGCTTGTTGTTCTTGGAACGGTGTCACTTG--T--C---TCACCACTG--ACCGTGTCT 231
| || || || ||| | |||||| ||| | | | ||| | | |||| |||
Sbjct 198 TAAC-TGCTGCTCCTGGTATGGTGTCTTTTGCCTCCCTGTTAACCCCGGCAACCGCGTCA 256
Query 232 CTGCACTCTCTGTCGCTGGACAA-GCCGATGTTGCTGG--AAGC-TTCCTCTCCGGCACT 287
| ||| | | | |||| || | || || |||| || | || ||||||||||||
Sbjct 257 CCATACTGGCACTAGATGGA-AATACAGA--TT-CTGGCAAAACTTTTCTCTCCGGCACT 312
Query 288 CTCTCGCCGTCGTTGGCTAAACTCAAGCACCTTGATGGGATTTACTTCACCGATC-TCAA 346
||||||||| | | ||||| ||| ||||||| | | |||| | ||||||||| || |
Sbjct 313 ATCTCGCCGTTGCTAGCTAAGCTCCAGCACCTCAACGAGATTCGCCTCACCGATCTTCGA 372
Query 347 GAACATCACTGGTTCTTTTCCTCAATTCCTTTTCCAATTACCAAATCTTAAGTA-CGTAT 405
|| |||||||| |||||||| |||||||||||| |||||||||| || ||| | || |
Sbjct 373 -AAGATCACTGGATCTTTTCCCCAATTCCTTTTCAAATTACCAAAGCTAAAG-ATTGTTT 430
Query 406 ACATT-GAGAATAACCGTCTCTCTGGTACTCTTCCGG-CTAACATCGGTGCGCTAAGCCA 463
|| || ||||||||||||||||||||| | ||||||| | ||||||||||| |||| |
Sbjct 431 AC-TTAGAGAATAACCGTCTCTCTGGTCCCCTTCCGGAC-AACATCGGTGCATTAAGTAA 488
Query 464 GCTT-GAAGCGTTCAGCCTCGAGGGAAACCGGTTCACCGGTCCGATCCCGAGCTCGATAT 522
| || ||| | || || || |||||||||||||||||||||||||||||||| ||||| |
Sbjct 489 G-TTGGAAACTTTTAGTCTGGAGGGAAACCGGTTCACCGGTCCGATCCCGAGTTCGATTT 547
Query 523 CTAATTTGACTCTG-TTAACTC-AACTCAAACTC 554
| ||||| ||| | ||| ||| |||||||||||
Sbjct 548 CCAATTTTACTA-GATTA-CTCCAACTCAAACTC 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61363384695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5