BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33610.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431 1591 0.0
Ahg922451 jgi|Araly1|922451|scaffold_103732.1 843 0.0
Ahg922460 jgi|Araly1|922460|scaffold_103741.1 464 8e-130
Ahg931207 jgi|Araly1|931207|scaffold_303664.1 372 5e-102
> Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431
Length=2796
Score = 1591 bits (861), Expect = 0.0
Identities = 1211/1379 (88%), Gaps = 28/1379 (2%)
Strand=Plus/Plus
Query 12 CTCCTTCACTCTCTTCATATTTTCTGTCATTACCTTTCTACAATGTTTAAGTTCAACCGG 71
|||||||||||||||||| ||| | ||||||| |||||| || | |||||||||||| ||
Sbjct 12 CTCCTTCACTCTCTTCATCTTTGCGGTCATTATCTTTCTTCAGTCTTTAAGTTCAACGGG 71
Query 72 AGCTGCCACGTGTCATCCTGATGACGAGGCGGGTCTTTTAGCTTTCAAATCCGGTATAAC 131
|||| ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 72 AGCTACCACGTGTCATCCTGATGATGAGGCGGGTCTTTTAGAATTCAAATCGGGTATAAC 131
Query 132 ACAAGATCCTTCGGGCATGCTCAGCTCTTGGAAGAAGGGTACTTCTTGCTGCTCGTGGAA 191
||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 132 TCAAGATCCTTCCGGCATTCTCAGCTCTTGGACGAAAAATACTTCTTGCTGCTCGTGGAA 191
Query 192 AGGTATCATTTGCTTTAACAGTGACCGCGTCACCATGCTTGAACTAGTAGGATTTCCCAA 251
|||||||| |||| | ||||| ||||| ||||||| || || ||||| |||||| ||
Sbjct 192 AGGTATCACTTGCCTCAACAGCGACCGTGTCACCAACCTCGACCTAGTGGGATTTTTAAA 251
Query 252 AAAACCCGAACGTTCCCTCTCCGGCACTCTCTCACCGTCGCTAGCCAAACTCCAGCACCT 311
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 252 AAAACCCGAACGCTCCCTTTCCGGTACTCTCTCACCGTCGCTGGCCAAACTTCAGCACCT 311
Query 312 -AAGCGTGATTAGCTTAGGAGGTCATGTGAACATCACTGGATCTTTTCCTAAGTTCCTTC 370
|| |||| |||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 312 CAA-CGTGGTTAGCTTAGGAGATCATGGGAACATCACTGGATCTTTTCCAAAGTTCCTTC 370
Query 371 TCCAATTACCAAAGCTAAGGTACGTTGACATCCAAAATAACCGTCTCTCCGGTCCACTTC 430
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 371 TCAAATTACCAAAGCTAAGGTACGTTGACATCCAGAATAACCGTCTCTCCGGTCCCCTTC 430
Query 431 CGGCTAACATCGGCGTGCTAAGCTTGTTGGAAGAAATCTTTCTTCAAGGAAATAAGTTCA 490
| | |||||||||||||||| | ||| ||| || |||||||||| |||||||||||||
Sbjct 431 CAACAAACATCGGCGTGCTAAACACGTTAGAACAATTCTTTCTTCAGGGAAATAAGTTCA 490
Query 491 CCGGTCCCATCCCGAACTCGATATCGAATCTAACTCGATTATCTTATCTCATTTTTGGCG 550
||||||| ||||||| ||||| || ||| |||| || ||||||||||||||||| || |
Sbjct 491 CCGGTCCGATCCCGAGTTCGATTTCCAATTTAACCCGGTTATCTTATCTCATTTTCGGAG 550
Query 551 GTAATCTCCTAACCGGGACTATACCCTTAGGGA-TTGCTAATCTCAAGCTCATGCAGAAT 609
|||||||| ||||||| |||||||| || ||| ||||||| ||||||||||||||| ||
Sbjct 551 GTAATCTCTTAACCGGAACTATACCGGTA-GGACTTGCTAACCTCAAGCTCATGCAGCAT 609
Query 610 CT-GCAACTCGGCGACAACCGCCTCTCTGGCACCATCCCGGATATTTTCGAATCCATGAA 668
|| || ||||||||||||||||||||| |||||| |||| || ||||||||||| ||||
Sbjct 610 CTGGC-ACTCGGCGACAACCGCCTCTCAGGCACCGTCCCAGAAATTTTCGAATCAATGAC 668
Query 669 GTTGCTCAAATTTCTCGATCTCTCCAGCAACGAATTCTAC-GGGAAACTTCCTCTATCGA 727
||||||||||||||| ||||||||| |||| | ||||| | |||| ||||||||| || |
Sbjct 669 GTTGCTCAAATTTCTAGATCTCTCCCGCAATGGATTCT-CTGGGAGACTTCCTCTGTCCA 727
Query 728 TTGC-TACACTGGCACCGACACTCCTGGCCCTCCAAG-TGAGCCAGAACAATCTCTCTGG 785
|||| | |||| |||||||||||||| ||||| |||| ||||||||||||||||||| ||
Sbjct 728 TTGCGT-CACTCGCACCGACACTCCTAGCCCT-CAAGCTGAGCCAGAACAATCTCTCGGG 785
Query 786 GGCGATCCCAAACTATATATCAAGATTCAACAAGCTTGAAAAGTTAGATCTCTCCAAGAA 845
||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 786 GGCGATCCCGGACTATATATCAAGATTCAACAGGCTCGAAAAGTTGGATCTCTCCAAGAA 845
Query 846 CCGGTTCTCGGGGGTTGTGCCTCAA-GGTTTCGTCAATCTCACCAATATTAACAATCTTG 904
||||||||| || ||||| || || |||||||||||| | |||||||||||||||||||
Sbjct 846 CCGGTTCTCAGGTGTTGTACC-GAAGGGTTTCGTCAATATGACCAATATTAACAATCTTG 904
Query 905 ATCTCTCTCACAATCTTCTAACCGGTCAATTTCCTGACTTGACCGTCAACACTATCGAAT 964
||||||| |||||||||||||| |||||| ||||| |||| ||| ||||| |||||||
Sbjct 905 ATCTCTCCCACAATCTTCTAACTAATCAATTCCCTGAATTGAACGTTAACACCATCGAAT 964
Query 965 ATCTTGATCTCTCTTACAACCAATTTCAACTAGAAACGATTCCACAATGGGTGACCTTGT 1024
||||||||||||| |||||||||||||| || ||||||||||||||||||||||| | ||
Sbjct 965 ATCTTGATCTCTCGTACAACCAATTTCAGCTGGAAACGATTCCACAATGGGTGACATCGT 1024
Query 1025 TGCCGAG-CGTCTTCTTGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTTAGATGAT 1083
||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1025 TGCCGAGTC-TCTTCTTGTTGAAGCTAGCAAAATGTGGGATCAAGATGAGCTTAGACGAT 1083
Query 1084 TGGAAGCCAGCGGAACCGTTGTACTACCATTACATTGATTTGTCGAAAAACGAGATCTCA 1143
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1084 TGGAAGCCAGCGGAACCCTTGTACTACCATTACATCGATCTGTCGAAAAACGAGATCTCA 1143
Query 1144 GGGAGTCTAGAAAGGTTCTTGAACGAGACGA-GGTATCTGCTTGAGTTTCGGGCGGCGGA 1202
|||||||||||||||||||||||| |||| | |||||||||| ||||||||||||||||
Sbjct 1144 GGGAGTCTAGAAAGGTTCTTGAACCAGAC-ATGGTATCTGCTGGAGTTTCGGGCGGCGGG 1202
Query 1203 GAACAAACTTCGATTCGATATGGGGAACCT-AACGTTTCCGAGGACACTAAAAACTTTGG 1261
||||||||| | |||||||||||||||| | || |||| | ||||| |||||||| |||
Sbjct 1203 GAACAAACTCCAATTCGATATGGGGAACTTGAA-GTTTGCAAGGACGCTAAAAACCCTGG 1261
Query 1262 ATCTGTCAAGGAACTTGGTATTTGGTAAGGTGCCTGTC-ACGGTGGCTGGTCTACA-AAG 1319
|||| ||||||||||||||||| || | |||||| | | | ||| |||||||| || ||
Sbjct 1262 ATCTTTCAAGGAACTTGGTATTCGGGATGGTGCCGG-CGATGGTAGCTGGTCTGCAGAA- 1319
Query 1320 ACTAAACTTAAGTCAAAACCATCTTTGTGGAGAA-CTTCCTA-CGACAAAGTTCCCGGC 1376
||| ||||| ||||||||||||||||| ||| || ||||| | | ||||||||||||||
Sbjct 1320 ACTGAACTTGAGTCAAAACCATCTTTGCGGA-AAGCTTCC-AGCTACAAAGTTCCCGGC 1376
Score = 204 bits (110), Expect = 2e-51
Identities = 331/432 (77%), Gaps = 38/432 (9%)
Strand=Plus/Plus
Query 40 ATTACCTTTCTACAATGTTTAAG-TTCAACCGGAGCTGCCACGTGTCATCCTGATGACGA 98
|||| |||||| | |||||| | ||| ||||||||||||||||| ||||||||||||||
Sbjct 1384 ATTATCTTTCTCCGGTGTTTATGTTTC-ACCGGAGCTGCCACGTGCCATCCTGATGACGA 1442
Query 99 GGCGGGTCTTTTAGCTTTCAAATCCG-GTATAACACAA-GATCCTTCGGGCATGCTCAGC 156
|||||||||||||||||||||||| | ||||||| ||| |||||||| | ||| ||||||
Sbjct 1443 GGCGGGTCTTTTAGCTTTCAAATC-GAGTATAAC-CAAAGATCCTTCAGACATTCTCAGC 1500
Query 157 TCTTGGAAGAAGGGTACTT-CTTGCTGCT-CGTGGAAAGGTATCATTTGCTTTAACAGTG 214
|| |||||||| |||||| || |||||| | |||| ||||||||||||||| | | |
Sbjct 1501 TCCTGGAAGAAAGGTACTAACT-GCTGCTTC-TGGAGAGGTATCATTTGCTTCCCCCGAG 1558
Query 215 ACCGCGTCAC-CATGCTTGAACTAGTA---GGATTTCCCAAAAAAC--CCGAACGTTCCC 268
|||| ||||| || || || | ||| ||| | | | || ||| || |
Sbjct 1559 ACCGTGTCACACAA-CTA-AA-T-GTAAACGGAGATGT-ATATCTTGGCCTAACCTTTC- 1612
Query 269 TCTCCGGCACTCTCTCACCG-TCGCTAGCCAAACTCCAGCACCTA-AGCGTGA-TT-AGC 324
||||||||||| |||| ||| | ||| |||||||| || ||||| || | || || | |
Sbjct 1613 TCTCCGGCACTATCTCGCCGAT-GCTGGCCAAACTTCAACACCTCGAG-G-GAATTTACC 1669
Query 325 TTAGGAGGTCATGTGAAC-ATCACTGGATCTTTTCCT-AAGTTCCTTCTCCAATTACCAA 382
| | || | ||| ||| ||||| |||||||| || |||||| ||| ||||||||
Sbjct 1670 TCACCTC-TCTTC-GAAAGATCGCTGGACCTTTTCCTCAA-TTCCTTTTCCGATTACCAA 1726
Query 383 AGCTA-AGGTACGTT-GACATCCAAAATAACCGTCTCTCCGGTCCACTTCCGGCTAACAT 440
|| || || || ||| | ||||||| ||||| |||||||||||| ||||| || || ||
Sbjct 1727 AGTTATAG-TATGTTAG-CATCCAAGGTAACCTTCTCTCCGGTCCCCTTCCAGCCAATAT 1784
Query 441 CGGCGTGCTAAG 452
|||| ||||||
Sbjct 1785 TGGCGAGCTAAG 1796
> Ahg922451 jgi|Araly1|922451|scaffold_103732.1
Length=1479
Score = 843 bits (456), Expect = 0.0
Identities = 1141/1461 (78%), Gaps = 89/1461 (6%)
Strand=Plus/Plus
Query 41 TTACCTTTCTACAATGTTTAAGTTCAACCGGAGCTGCCACGTGTCATCCTGATGACGAGG 100
||| |||||| | ||| ||| | | ||||||||||||||||||||||||||||| || |
Sbjct 63 TTATCTTTCTCCGGTGTCTAAATCCCACCGGAGCTGCCACGTGTCATCCTGATGATGAAG 122
Query 101 CGGGTCTTTTAGCTTTCAAATCCGGTATAACACAAGATCCTTCGGGCATGCTCAGCTCTT 160
|||||||| ||||||| ||| | |||||||| | ||| |||||||| || ||||| ||||
Sbjct 123 CGGGTCTTCTAGCTTTTAAAGCGGGTATAACCCGAGACCCTTCGGGTATTCTCAGTTCTT 182
Query 161 GGAAGAAGGGTACTTCTTGCTGCTCGTGGAAAGGTATCATTTGCT-TTAACAGTGACCGC 219
||||||| |||||| |||| || || ||||| ||| ||| ||| | | | || |||||||
Sbjct 183 GGAAGAAAGGTACTGCTTGTTGTTCTTGGAACGGTGTCACTTG-TCTCACCACTGACCGC 241
Query 220 GTCACCATGCT-TGAACTAG-TAGGA-TTTCCCAAAAAACCCGAACG-TTCCCTCTCCGG 275
||| || || | | | | | ||| || | | ||| | || |||||||||
Sbjct 242 GTCTCCGCACTCTCTA-TCGCT-GGACAAGCCGATGTTGCGGGAA-GCTT-CCTCTCCGG 297
Query 276 CACTCTCTCACCGTCGCTAGCCAAACTCCAGCACCTAAG-CGTGA-TTAGCTT-A-GGAG 331
||||||||| ||||||||||| |||||||| ||||| | | || ||| ||| | ||
Sbjct 298 CACTCTCTCGCCGTCGCTAGCTAAACTCCAACACCT-CGATGGGATTTA-CTTCACCGAT 355
Query 332 GTCATGTGAACATCACTGGATCTTTTCCT-AAGTTCCTTCTCCAATTACCAAAGC-TAAG 389
||| |||||||||||| ||||||||| || |||||| ||||||||||||| | |||
Sbjct 356 CTCA--AGAACATCACTGGTTCTTTTCCTCAA-TTCCTTTTCCAATTACCAAATCTTAA- 411
Query 390 GTACGTTGACATCCAAAATAACCGTCTCTCCGGTCCACTTCCGGCTAACATCGGCGT-GC 448
|| |||| |||| | |||||||| ||||||||||| ||||||| ||||||||| | |
Sbjct 412 GTTCGTTTACATTGAGAATAACCGCCTCTCCGGTCCTCTTCCGGTTAACATCGG-TTCTC 470
Query 449 TAAGCTTGTTGGAAGAAATCTTTCTTCAAGGAAATAAGTTCACCGGTCCCATCCCGAA-C 507
| ||| | | |||| || ||| || ||||| |||||||||||| ||||| || |
Sbjct 471 TTAGCCAGCTCGAAGCGTTCAGTCTCCAGGGAAACCGGTTCACCGGTCCAATCCC-AAGC 529
Query 508 TCGATATCGAATCTAACTCGATTATCTTATCTCATTTTTGGCGGTAATCTCCTAACCGGG 567
||||| || ||| | ||||| ||| | | |||| | || ||||||||||||||||
Sbjct 530 TCGATTTCTAATTTGACTCGGTTAACACAACTCAAACTCGGTAGTAATCTCCTAACCGGC 589
Query 568 ACTATACCCTTAGGGATTGCTAATCTCAAGCTCATG-CAGAATCTGCAA-CTCGGCGACA 625
||||| |||||||| ||||| ||||||||||||||| | |||| ||| || || | |
Sbjct 590 ACTATTCCCTTAGGAATTGCCAATCTCAAGCTCATGTC-CTATCT-CAACCTTGGAGGTA 647
Query 626 ACCGCCTCTCTGGCACCATCCCGGATATTTTCGAATCCAT----GAAGTT-GCTCAAATT 680
|||| ||| ||||||| |||||||| |||||| ||||||| ||| || | || |||
Sbjct 648 ACCGGCTCACTGGCACTATCCCGGACATTTTCAAATCCATGCCGGAACTTCGATC--ATT 705
Query 681 -TCTCGATCTCTCCAGCAACGAATTCTACGGGAAACTTCCTCTATCGATTGCTA-CACTG 738
||| |||| ||| ||||| ||||| |||||| ||||||| || ||||| | ||||
Sbjct 706 AACTC--TCTC-CCA-CAACGGATTCTCCGGGAATCTTCCTCCGTCCATTGC-ATCACTC 760
Query 739 GCACCGACACTCCTGG-CCCTCCAAGTGA-GCCAGAACAATCTCTCTGGGGCGATCCCAA 796
||||||| || | || ||| | ||| | |||| ||||||||||| ||| | ||||| |
Sbjct 761 GCACCGATTCT-CAGGTTCCT-CGAGTTAGGCCATAACAATCTCTCCGGGACAATCCCGA 818
Query 797 AC-TATATATCAAGA-TTCAACAAGCTTGA-AAAGTTAGATCTCTCCAAGAACCGGTTCT 853
|| | | |||||| | ||||| ||| || | | || |||||||||||||| |||||||
Sbjct 819 ACTTCT-TATCAA-ACTTCAAGGCGCTCGACACA-TTGGATCTCTCCAAGAATCGGTTCT 875
Query 854 CGGGGGT-TGTGCCTCAAG-GTTTCGTC-AATCTCACCAATAT-TAACAATCTTGATCTC 909
| || || | |||| ||| |||||| | ||||| ||||| || | |||||| |||||
Sbjct 876 CAGGAGTCT-TGCC-AAAGAGTTTCG-CAAATCTGACCAAAATCT-TCAATCTCAATCTC 931
Query 910 TCTCACAATCTTCTAACCGGTCAATTTCCTGACTTGACCGTCAACA-CTATCGAATATCT 968
|||||||||||||||| | || ||| |||| ||||| ||| || | || |||| |||
Sbjct 932 GCTCACAATCTTCTAACTGATCCATTCCCTGTCTTGAACGTTAA-AGGGATAGAATCTCT 990
Query 969 TGATCTCTCTTACAACCAATTTCAACTAGAA-ACGATTCC-ACAATGGGTGACCTT-GTT 1025
||||| || ||||||||||||| ||| ||| || ||||| | ||||||||| ||| ||
Sbjct 991 GGATCTTTCATACAACCAATTTC-ACTTGAACACAATTCCTA-AATGGGTGA-CTTCGTC 1047
Query 1026 GCCGAGCGTCTTCTTGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTTAGATGATTG 1085
|||| | |||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1048 ACCGATCATCTTCTCGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGTTTAGACGATTG 1107
Query 1086 GAAGCCAGCGGAACCGTTGTACTACCATTACATTGATTTGTCGAAAAACGAGATCTCAGG 1145
||||||||| || | | |||||| ||| ||| ||||||||| ||||||||||||||||
Sbjct 1108 GAAGCCAGCACAAACATACTACTACGATTTCATCGATTTGTCGGAAAACGAGATCTCAGG 1167
Query 1146 GAGTC-TAGAAAGGTTCTTGAACGAGAC-GAGGTATCT-GCTTGAGTTTCG-GGCGGCGG 1201
||||| | | ||||||||||||| | || ||| | ||| | | ||||| | |||| |||
Sbjct 1168 GAGTCCT-GCAAGGTTCTTGAACCAAACAGAGTT-TCTAG-TGGAGTT-CAAGGCGTCGG 1223
Query 1202 AGAACAAACTTCGATTCGATATGGGGAACCTAACGTTTC-CGAGGACACTAAAAACTTTG 1260
||||||||| ||||||||||||||||| |||||||| | | | ||| || ||||| |||
Sbjct 1224 GGAACAAACTCCGATTCGATATGGGGAAGCTAACGTT-CGCAAAGACGCTGAAAACCTTG 1282
Query 1261 GATCTGTCAAGGAACTTGGTATTTGGTAAGGTGCCTGTC-ACGGTGGCTGGTCTACAAAG 1319
||||| ||||| ||||||||||| || |||||||| | | || ||||| || ||| || |
Sbjct 1283 GATCTATCAAGAAACTTGGTATTCGGGAAGGTGCCAG-CGACAGTGGCCGGGCTA-AA-G 1339
Query 1320 AC-TA-AACTTAAGTCAAAACCATCTTTGTGGAGAA-CTTCCTACGACAAAGTTCCCGGC 1376
|| | ||| | ||||| ||||| ||||| ||| || ||||| |||||||||||||||
Sbjct 1340 ACATTGAACGTGAGTCACAACCAACTTTGCGGA-AAGCTTCCGGTGACAAAGTTCCCGGC 1398
Query 1377 TAGCGCCTTCGCCGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCCTTGTAAAGCTTA 1436
||||| || || ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1399 CAGCGCGTTTGCTGGTAACGACTGTCTTTGCGGCTCTCCACTTCCTCCTTGTAAAGCTTA 1458
Query 1437 -GTAACAAGAGAACTACAATT 1456
| ||||| ||||||||||
Sbjct 1459 AGCGGCAAGAAAACTACAATT 1479
> Ahg922460 jgi|Araly1|922460|scaffold_103741.1
Length=1403
Score = 464 bits (251), Expect = 8e-130
Identities = 662/853 (78%), Gaps = 58/853 (7%)
Strand=Plus/Plus
Query 613 CAA-CTCGGCGACAACCGCCTCTCTGGCACCATCCCGGATAT-TTTCGAATCCATGAAGT 670
||| || |||| |||||||||||||||||||||| | ||||| ||| || |||||| |
Sbjct 560 CAATCTTGGCGGCAACCGCCTCTCTGGCACCATCTCAGATATATTT-AAACCCATGACGA 618
Query 671 TGCTCAAATTTCTCGATCTCTCCAGCAACGAATTCTAC-GGGAAACTTCCTCTATCGATT 729
||| || ||| ||||||||| |||||| ||||| | ||||||||||||| |||| ||
Sbjct 619 ACCTCCAACATCTTGATCTCTCCCGCAACGGATTCT-CTGGGAAACTTCCTCCATCGTTT 677
Query 730 GCTA-CACTGGCACCGACACTCCTGGCCCTCCAAGTGAGCCAGAACAATCTCTCTGGG-G 787
| | | || |||||||| ||| ||| | ||||||||||||||||||| |||
Sbjct 678 TC-ATCGCTTGCACCGACCCTCAAATATCTCGATCTGAGCCAGAACAATCTCTC-GGGAA 735
Query 788 CGATCCCAAACTATATATCAAGATTCAACAAGC-TTGAAAAGTTAGATCTCTCCAAGAAC 846
|||| || ||||| ||||||||||| | | || || | | || | ||||||||||||
Sbjct 736 CGATTCCGGACTATTTATCAAGATTCGAGACGCTTTCCACA-TTGGTTCTCTCCAAGAAT 794
Query 847 CGGTTCTCGGGGGTTGTGCCTCAA-G-GTTTCGTC-AATCTCACCAATATTAACAATCTT 903
| || ||||||||||||| | ||| | |||||| | ||| | |||| |||| || ||||
Sbjct 795 CAGTACTCGGGGGTTGTG-C-CAACGAGTTTCG-CTAATTTAACCAGTATTTACTATCTC 851
Query 904 GATCTCTCTCACAATCTTC-TAACCGGTCAATTTCC-TGACTTG-ACCGTCAACACTATC 960
|||||||| ||||||| || ||||||||| | |||| || |||| | || | | |||
Sbjct 852 GATCTCTCCCACAATC-TCTTAACCGGTCCA-TTCCATGCCTTGAAGAGT--A-GC-ATC 905
Query 961 GAATATCTTGATCTCTCTTACAACCAATTTCAA-CTAG-AAACGATTCCACAATGGGTGA 1018
| ||||||||||| || |||||||||||| || || | |||| ||||| |||||||||
Sbjct 906 GGCTATCTTGATCTATCGTACAACCAATTT-AACCT-GAAAACCATTCCGGAATGGGTGA 963
Query 1019 CCTTGTTGCCGAGCGTCTTCTTGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTT-A 1077
||| || | |||| | | || | ||| | || |||||| | |||||||||| ||| |
Sbjct 964 CCTCGTCGACGAGTTTGTACTCACTAAAGTTGGCTAAATGCAGTATCAAGATGAACTTAA 1023
Query 1078 GATGATTGGAAGCCAGCGGA-ACC--GTTGTACTACCATTACATTGATTTGT-CGAAAAA 1133
| ||||||| ||||| | | ||| |||| | | || |||| ||| ||| || ||||
Sbjct 1024 G-CGATTGGAGGCCAGTGAAGACCAAATTGT--T-CAATAACATCGATCTGTCCG-AAAA 1078
Query 1134 CGAGATCTCAGGGAGTCTAGA-AAGGTTCTTGAACGAGAC-GAGGTATCTGCTT-GAGTT 1190
|||| |||||||||||| | | | ||||| | ||| |||| |||| |||| || |||||
Sbjct 1079 CGAGTTCTCAGGGAGTCCA-ACATGGTTCCTAAACAAGACGGAGG-ATCT-ATTGGAGTT 1135
Query 1191 TCGGGCGGC-GGAGAACAAACTTCGATTCGATATGGGGAACCTAACGTTTC-CGAGGACA 1248
| |||| | ||| |||||||| | ||| || |||||||| | | ||||| | | | ||
Sbjct 1136 CCAGGCGTCGGGA-AACAAACTCCAATTTGACATGGGGAAGTTGA-GTTTCGCAAAGTCA 1193
Query 1249 C-TAAAAACTTTGGATCTGTCAAGGAACTTGGTATTTGGTAAGGTGCC-TGTCACGGTGG 1306
| || || | |||||||| |||||||||||||||||||| |||||||| || || ||||
Sbjct 1194 CTTAGAATC-TTGGATCTATCAAGGAACTTGGTATTTGGGAAGGTGCCATG-GACAGTGG 1251
Query 1307 CTGGTCTACAA-AGACTAAACTTAAGTCAAAACCATCTTTGTGGAGAA-CTTCCTACGAC 1364
|| || || | |||||| || |||||||| |||||||||||| || ||||| |||
Sbjct 1252 CTAAACT-GAAGAAACTAAATTTGAGTCAAAATCATCTTTGTGGA-AAGCTTCCGGTGAC 1309
Query 1365 AAAGTTCCCGGCTAGCGCCTTCGCCGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCC 1424
|||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1310 AAAGTTCCCGGCCAGCGCGTTTGCGGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCC 1369
Query 1425 TTGTAAAGCTTAG 1437
|||||||||||||
Sbjct 1370 TTGTAAAGCTTAG 1382
> Ahg931207 jgi|Araly1|931207|scaffold_303664.1
Length=1412
Score = 372 bits (201), Expect = 5e-102
Identities = 645/850 (76%), Gaps = 68/850 (8%)
Strand=Plus/Plus
Query 625 AACCGCCTCTCTGGCACCATCCCGGATATTTTCGAATCCATGAAGTTGCTCAAATTTCTC 684
|||||| |||||||||||||||| ||||||||| ||||||||| | ||| |||||||
Sbjct 573 AACCGCATCTCTGGCACCATCCCAGATATTTTCAAATCCATGACGCAGCTTGGATTTCTC 632
Query 685 GATCTCTCCAGCAA-CGAATTCTACGGGAAACTTCCTCTATCGATTGCTA-CACTGGCAC 742
| ||||||| |||| || ||| | |||||||||||||| || |||| | | || || |
Sbjct 633 GCTCTCTCCCGCAATCG-ATTATCCGGGAAACTTCCTCCGTCTTTTGC-ATCGCTTGCGC 690
Query 743 CGACACTCCTGGCCCTCCAAGTGAGCCAGAACAATCTCTCTGGGG-CGATCCCAAACTAT 801
| | ||| ||| |||| || | | ||| ||||||||||| |||| |||||| ||||||
Sbjct 691 CAAGTCTCGTGGTCCTCGAACTAAACCAAAACAATCTCTC-GGGGAAGATCCCTAACTAT 749
Query 802 ATATCAAGATTCAACAAGCT-TGAAAAGTTAG-ATCTCTCCAAGAACCGGTTCTCGGGGG 859
||||||||||||| || | | | || | ||||||||||||| | | ||| ||||
Sbjct 750 TTATCAAGATTCAAGGAGATGTCCTCA-TT-GTATCTCTCCAAGAATCAATACTCTGGGG 807
Query 860 TTGTGCCTCAAG-GTTTCGTCAATCTCACCAATA-TTAA-CAATCTTGATCTCTCTCACA 916
| ||||| ||| |||||| |||| | ||||| | |||| | ||||||| ||||| ||||
Sbjct 808 TCGTGCC-AAAGAGTTTCGCCAATATGACCAA-ACTTAATC-ATCTTGACCTCTCCCACA 864
Query 917 ATCTTCTAACCGGTCAATTTCCTGACTTG-A-CCG-TC---AACACTATCGAATATCTT- 969
||||||||||||||| ||| || |||||| | | || |||| ||| | | ||
Sbjct 865 ATCTTCTAACCGGTCCATTCCCAGACTTGAAGATGATCGATAACATTATTTACGCT-TTG 923
Query 970 GATCTCTCTTACAACCAATTTCAACTAGAAACGATTCC-ACAATGGGTGACCTTGTTGC- 1027
||||| || ||||||| ||| || ||| |||| || || | ||||||||||| | || |
Sbjct 924 GATCTATCGTACAACCGATTCCACCTAAAAACAATACCGA-AATGGGTGACC-TCTT-CA 980
Query 1028 CGA-GCGTCTTCTTGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTTAGATGATTGG 1086
||| | || || ||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 981 CGATCCATCCACTCGTTGAAGCTAGTTAAATGCGGGATCAAGATGAGATTTGAAGATTGG 1040
Query 1087 AAGCCAG-CGGAAC----CGTTGTACTACCATTACATTGAT-TTGTCGA-AAAACGAGAT 1139
||||||| ||||| | || | | || |||| || || || | ||||||||||
Sbjct 1041 AAGCCAGAGGGAACAAAAC-TT-T-TTTCC--GACATCAATCTT-TC-AGAAAACGAGAT 1093
Query 1140 CTCAGGGAGTCTAGA-AAGG-TTCTTGAACGAGACG-AG-GTATCTGCTTGAGTTTCGGG 1195
||||||||||| | | | || ||||| ||| | ||| || | |||| | ||||||| |
Sbjct 1094 CTCAGGGAGTCCA-ACATGGTTTCTT-AAC-A-ACGCAGAGAATCTTATGGAGTTTCAAG 1149
Query 1196 CGGC-GGAGAACAAACTTCGATTCGATATGGGGAACCT-AACGTTTCCGAGGACA-C-TA 1251
|| | || ||||||||| |||||||| |||||||| || || || | | | | | |
Sbjct 1150 CGTCAGG-GAACAAACTCCGATTCGACATGGGGAAGCTGAA--ATT-C-AAAAAATCGTT 1204
Query 1252 AAAACT-TTGGATCTGTCAAGGAACTTGGTATTTGGTAAGGTGCCTGTC-ACGGTGGCTG 1309
| ||| || ||| |||||||||| ||||||||||| ||||| || | || |||||||
Sbjct 1205 GAGACTATTAGATATGTCAAGGAATTTGGTATTTGGGAAGGTACC-AACAACCGTGGCTG 1263
Query 1310 G-TCTACAAAGACTAAACTTAAGTCAAAACCATCTTTGTGGAGAA-CTTCCTACGACAAA 1367
| | | ||| ||| ||| ||||||| ||||| ||||| ||| || ||||| ||||||
Sbjct 1264 GAT-TGGAAAAACTCAACGTAAGTCACAACCAACTTTGCGGA-AAGCTTCCGGTGACAAA 1321
Query 1368 GTTCCCGGCTAGCGCCTTCGCCGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCCTTG 1427
|||| ||| | | || || |||||||||||||| || ||||||||||||||||||||
Sbjct 1322 GTTCAAGGCCAATACGTTTGCTGGTAACGACTGTCTCTGCGGCTCTCCACTTTCTCCTTG 1381
Query 1428 TAAAGCTTAG 1437
||||||||||
Sbjct 1382 TAAAGCTTAG 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5