BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33612.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431 1022 0.0
Ahg922460 jgi|Araly1|922460|scaffold_103741.1 835 0.0
Ahg932896 jgi|Araly1|932896|scaffold_400884.1 381 8e-105
> Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431
Length=2796
Score = 1022 bits (553), Expect = 0.0
Identities = 760/862 (88%), Gaps = 8/862 (1%)
Strand=Plus/Plus
Query 507 TTCGATAGCCAATTTGACTCGGTTAACTTGGCTTAACCTCGGCAACAACCGCCTCTCTGG 566
||||||| |||| ||||| |||||| |||||||||| ||| |||||||||||||||||||
Sbjct 1908 TTCGATATCCAACTTGACACGGTTATCTTGGCTTAATCTCAGCAACAACCGCCTCTCTGG 1967
Query 567 CACCATTCCAAACATATTTAAATCCATGAAAGAGCTCAATTCTCTTGATCTCTCCCGCAA 626
|||||| ||||| || ||||||||||||| ||||||| | ||||| ||||||||||||||
Sbjct 1968 CACCATCCCAAATATTTTTAAATCCATGATAGAGCTCCAGTCTCTCGATCTCTCCCGCAA 2027
Query 627 CGGATTTTTCGGGAGACTTCCTCCGTCGATTGCTTCGCT-TGCACCAACTCTCTATTA-C 684
| ||| | ||||| ||| |||||||||||||| || || | || ||||| | | |
Sbjct 2028 CAAATTCTCCGGGAAACTACCTCCGTCGATTGCATCTCTCT-CATTGACTCT-AACAATC 2085
Query 685 CTCGATCTGAGCCAGAACAATCTCTCGGGGACGATCCCAAACTATTTATCAAGGTTTGAG 744
|| ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2086 CTTAATCTGGGCCAGAACAATCTGTCGGGGACGATCCCAAACTATTTATCAAGATTTGAG 2145
Query 745 GCGCTCTCCACATTGGTACTCTCGAAGAATAAGTACTCGGGGGTCGTGCCAATGAGTTTC 804
|| |||||||||||||| ||||| |||||| | ||||| ||| ||||||| |||||||||
Sbjct 2146 GCTCTCTCCACATTGGTTCTCTCCAAGAATCATTACTCAGGGTTCGTGCCGATGAGTTTC 2205
Query 805 ACCAATCTGATCAACATTACCAATCTTGATCTCTCCCACAATCTTCTAACTGGTCCATTC 864
|| ||| ||| ||||||||||| |||||||||||||||||||| |||||| ||| |||||
Sbjct 2206 ACAAATTTGACCAACATTACCATTCTTGATCTCTCCCACAATCATCTAACCGGTGCATTC 2265
Query 865 CCTGTATTGAAAAGCATTAACGGCATTGAATCTCTGGATTTGTCGTACAACAAGTTTCAC 924
||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2266 CCTGTCTTGAATAGCATTGACGGCATTGAATCTCTGGATTTGTCGTACAACAAGTTTCAT 2325
Query 925 CTGAAAACGATTCCAAAATGGATGATATCGTCACCATCCATCTACTCATTGAAGTTGGCA 984
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||| |
Sbjct 2326 CTGAAAACGATTCCGAAATGGATGATATCGTCACCGTCCATCTACTCGTTGAAGCTGGTA 2385
Query 985 AAATGTGGGCTGAAGATAAGCTTAGATGATTGGAAGCTAGCAGGGACCTACTACTATGAT 1044
||||| ||| | || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2386 AAATGCGGGATCAACATAAGCTTAGATGATTGGAAGCTAGCAGGAACCTACTACTATGAT 2445
Query 1045 TCCATCGATCTGTCTGAAAACGAGATCTCAGGGAGTCCGGCTAAGTTCCTCAGCCAGATG 1104
| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2446 TTCATCGATCTATCTGAAAACGAGATCTCAGGGAGTCCGGCTAGGTTCCTCAACCAGATG 2505
Query 1105 AAGTATCTGATGGAGTTCCGAGCGGCAGGGAACAAACTCCGATTCGATTTGGGGAAGCTG 1164
|||||||||| || |||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 2506 AAGTATCTGAAAGATTTCCGAGCAGCAGGGAACAAACTCCGGTTTGATTTGGGGAAGCTG 2565
Query 1165 ACGTTTGTG-AGGACTCTTGAAACCTTGGATTTGTCAAGGAACTTGATATTCGGGAGAG- 1222
||||||||| || | |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2566 ACGTTTGTGGAG-AGGCTTGAAACTTTGGATTTGTCAAGGAACTTGATATTCGGGA-AGG 2623
Query 1223 TGCTGGCAACATTTGCTGGACTGAAGACAATGAACGTGAGTCAAAACCATCTTTGCGGAA 1282
||| ||| ||| | || ||| ||||||| ||||||| ||||| ||||||||||||||||
Sbjct 2624 TGCCGGCGACAGTGGCCGGATTGAAGACGTTGAACGTAAGTCACAACCATCTTTGCGGAA 2683
Query 1283 AACTTCCGGTGACAAAGTTCCCGGCCAGTGYGTTTGCGGGTAACGACTGTCTTTGTGGCT 1342
||||||| | |||||||||||| ||||||| | ||| || ||||||||||| |||||||
Sbjct 2684 AACTTCCAGCGACAAAGTTCCCAGCCAGTGCATATGCCGGCAACGACTGTCTCTGTGGCT 2743
Query 1343 CTCCACTTTCTCCTTGTAAAGT 1364
|||||||||||||||||| |||
Sbjct 2744 CTCCACTTTCTCCTTGTAGAGT 2765
Score = 525 bits (284), Expect = 4e-148
Identities = 415/478 (87%), Gaps = 10/478 (2%)
Strand=Plus/Plus
Query 35 GTGCTATTATCTTTCTCCGGTGTTT-TCGTTCCACCGGAGCTGCCACGTGTGATCCTGAT 93
||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||
Sbjct 1379 GTGCTATTATCTTTCTCCGGTGTTTAT-GTTTCACCGGAGCTGCCACGTGCCATCCTGAT 1437
Query 94 GACGAAGCGGGTCTTTTAGGTTTCAAATCGGGTATAACCAAAGATCCTTCGGGCATTCTC 153
||||| ||||||||||||| |||||||||| ||||||||||||||||||| | |||||||
Sbjct 1438 GACGAGGCGGGTCTTTTAGCTTTCAAATCGAGTATAACCAAAGATCCTTCAGACATTCTC 1497
Query 154 AGCTCATGGAAGAAAGGTACTGACTGCTGCTTTTGGAGCGGTGTCTTTTGCGT-CAACAA 212
||||| ||||||||||||||| |||||||||| ||||| ||| || ||||| | | | |
Sbjct 1498 AGCTCCTGGAAGAAAGGTACTAACTGCTGCTTCTGGAGAGGTATCATTTGCTTCCCCCGA 1557
Query 213 CGACCGCGTCACACAACTAAGTGTGGATGGAGACT-TTTCTCTTGACGGAAACTCTCCCT 271
||||| ||||||||||||| ||| | ||||| | | | ||||| | || || || ||
Sbjct 1558 -GACCGTGTCACACAACTAAATGTAAACGGAGA-TGTATATCTTGGCCTAACCTTTCTCT 1615
Query 272 CCGGCACTATCTCGCCGATGCTGGCCAAACTTCAACACCTCGAGAGGATTCTT-C-TCAC 329
|||||||||||||||||||||||||||||||||||||||||||| ||| | || | ||||
Sbjct 1616 CCGGCACTATCTCGCCGATGCTGGCCAAACTTCAACACCTCGAG-GGAAT-TTACCTCAC 1673
Query 330 CTCTCTTCGAAAGATTACTGGTCCTTTTCCTCAATTCATTTTCCGATTACCAAAGCTAAA 389
||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| || |
Sbjct 1674 CTCTCTTCGAAAGATCGCTGGACCTTTTCCTCAATTCCTTTTCCGATTACCAAAGTTATA 1733
Query 390 TTACATAAACATCCAAGGTTGCCTTCTCTCTGGTCCCCTTCCAGCCAACATCGGCGAGCT 449
|| | | |||||||||| ||||||||| ||||||||||||||||| || ||||||||
Sbjct 1734 GTATGTTAGCATCCAAGGTAACCTTCTCTCCGGTCCCCTTCCAGCCAATATTGGCGAGCT 1793
Query 450 AAGTCAATTGAAAACTTTAGTTATCGACGGAAACATGTTCACGGGTCATATTCCAAGT 507
|||||||||||||||||||||||| || |||||| ||||||| ||||| |||||||||
Sbjct 1794 AAGTCAATTGAAAACTTTAGTTATTGAAGGAAACCTGTTCACCGGTCAGATTCCAAGT 1851
Score = 508 bits (275), Expect = 4e-143
Identities = 628/792 (79%), Gaps = 49/792 (6%)
Strand=Plus/Plus
Query 544 CTCGGCAACAACCGCCTCTCTGGCACCATTCCA-AACATATTT-AAATCCATGAAAG-AG 600
|||||| ||||||||||||| |||||| | ||| || || ||| |||| ||| | | |
Sbjct 616 CTCGGCGACAACCGCCTCTCAGGCACCGTCCCAGAA-AT-TTTCGAATCAATG-ACGTTG 672
Query 601 CTC-AATTCTCTTGATCTCTCCCGCAACGGATTTTTC-GGGAGACTTCCTCCGTCGATTG 658
||| |||| ||| |||||||||||||| ||| || || ||||||||||||| ||| ||||
Sbjct 673 CTCAAATT-TCTAGATCTCTCCCGCAATGGA-TTCTCTGGGAGACTTCCTCTGTCCATTG 730
Query 659 CTTCGCTTGCACC-A-ACTCTCTATTACCTCGATCTGAGCCAGAACAATCTCTCGGGGAC 716
| || || ||||| | |||| ||| |||| | |||||||||||||||||||||||| |
Sbjct 731 CGTCACTCGCACCGACACTC-CTA-GCCCTCAAGCTGAGCCAGAACAATCTCTCGGGGGC 788
Query 717 GATCCCAAACTATTTATCAAGGTTTGA-GGCGCTCTCCACA-TTGGTA-CTCTCGAAGAA 773
|||||| ||||| ||||||| || | | |||| | | |||| | ||||| |||||
Sbjct 789 GATCCCGGACTATATATCAAGATTCAACAG-GCTC-GAAAAGTTGG-ATCTCTCCAAGAA 845
Query 774 TAAGTACTCGGGGGTCGTGCC-AATGAGTTTCACCAATCTGATCAACATTACCAATCTTG 832
|| ||| || || || || || | ||||| |||| ||| ||| |||| ||||||||
Sbjct 846 CCGGTTCTCAGGTGTTGTACCGAA-GGGTTTCGTCAATATGACCAATATTAACAATCTTG 904
Query 833 ATCTCTCCCACAATCTTCTAACTGGTCCATTCCCTGTATTGAAAAGCATTAACGGCATTG 892
||||||||||||||||||||||| || |||||||| |||||| | ||||| ||| |
Sbjct 905 ATCTCTCCCACAATCTTCTAACTAATCAATTCCCTGAATTGAAC-G--TTAACACCATCG 961
Query 893 AATCTCTGGATTTGTCGTACAAC-AAGTTTCACCTGAAAACGATTCCAAAATGGATGATA 951
||| ||| ||| | ||||||||| || ||||| ||| ||||||||||| ||||| ||| |
Sbjct 962 AATATCTTGATCTCTCGTACAACCAA-TTTCAGCTGGAAACGATTCCACAATGGGTGACA 1020
Query 952 TCGTCACC-A-TCCATCTACTCATTGAAGTTGGCAAAATGTGGGCTGAAGATAAGCTTAG 1009
|||| || | || ||| || |||||| | |||||||||||| | ||||| |||||||
Sbjct 1021 TCGTTGCCGAGTC--TCTTCTTGTTGAAGCTAGCAAAATGTGGGATCAAGATGAGCTTAG 1078
Query 1010 ATGATTGGAAGCTAGCAGGGACC-TACTACTATGATTCCATCGATCTGTCTGAAAA-CGA 1067
| |||||||||| ||| || ||| | ||||| ||| |||||||||||| ||||| |||
Sbjct 1079 ACGATTGGAAGCCAGC-GGAACCCTTGTACTACCATTACATCGATCTGTC-GAAAAACGA 1136
Query 1068 GATCTCAGGGAGTCCGGCTAAG-TTCCTCAGCCAGATGAAG-TATCTGATGGAGTTCCGA 1125
|||||||||||||| | ||| ||| | | ||||| | | |||||| ||||||| ||
Sbjct 1137 GATCTCAGGGAGTCTAGA-AAGGTTCTTGAACCAGAC-ATGGTATCTGCTGGAGTTTCGG 1194
Query 1126 GCGGCAGGGAACAAACTCCGATTCGATTTGGGGAAGCT-GACGTTTGTGAGGACTCTTGA 1184
||||| ||||||||||||| ||||||| ||||||| || || ||||| ||||| || |
Sbjct 1195 GCGGCGGGGAACAAACTCCAATTCGATATGGGGAA-CTTGAAGTTTGCAAGGACGCTAAA 1253
Query 1185 AACCTTGGAT-TTGTCAAGGAACTTGATATTCGGGA-GAGTGCTGGCAACATTTGCTGGA 1242
|||| ||||| || |||||||||||| ||||||||| | |||| ||| | | |||||
Sbjct 1254 AACCCTGGATCTT-TCAAGGAACTTGGTATTCGGGATG-GTGCCGGCGATGGTAGCTGGT 1311
Query 1243 CTGAAGACAA-TGAACGTGAGTCAAAACCATCTTTGCGGAAAACTTCCGG-TGACAAAGT 1300
||| ||| || ||||| ||||||||||||||||||||||||| ||||| | | |||||||
Sbjct 1312 CTGCAGA-AACTGAACTTGAGTCAAAACCATCTTTGCGGAAAGCTTCCAGCT-ACAAAGT 1369
Query 1301 TCCCGGCCAGTG 1312
||||||||||||
Sbjct 1370 TCCCGGCCAGTG 1381
> Ahg922460 jgi|Araly1|922460|scaffold_103741.1
Length=1403
Score = 835 bits (452), Expect = 0.0
Identities = 1116/1426 (78%), Gaps = 90/1426 (6%)
Strand=Plus/Plus
Query 1 ATGAACTCTTGCTCCTTCAATTTATTCATCTTAGGTGCTATTATCTTTCTCCGGTGTTTT 60
|||||||||| ||| |||| | | |||||||| | || |||||||||||||||||||
Sbjct 21 ATGAACTCTTACTCTTTCACTCTCTTCATCTTTGCCGCCATTATCTTTCTCCGGTGTTCA 80
Query 61 CGTTCCACCGGAGCTGCCACGTGTGATCCTGATGACGAAGCGGGTCTTTTAGGTTTCAAA 120
|||| ||| ||||||||| ||| | |||||||| || ||||||||||||| |||||||
Sbjct 81 AGTTCGACCAAAGCTGCCACTTGTCACCCTGATGATGAGGCGGGTCTTTTAGCTTTCAAA 140
Query 121 TCGGGTATAACCAAAGATCCTTCGGG-CATTCTCAGCTCATGGAAGAAAGGTACTGACTG 179
|||||||||||| ||||||||| ||| || ||| | ||| ||||||||||||||||| ||
Sbjct 141 TCGGGTATAACCCAAGATCCTTTGGGCCA-TCTGAACTCGTGGAAGAAAGGTACTGATTG 199
Query 180 CTGCTTTTGGAGCGG-TGTCT-TTTGCGTC-AACAACGACCGCGTCACACAACTAAGTGT 236
||||| ||| | || ||| | |||| | | | | |||||||| |||||| |
Sbjct 200 CTGCTCATGG-GTGGCTGT-TACTTGC-ACTAGGGGCAATCGCGTCACTGAACTAAACCT 256
Query 237 GGATGGAGACTTTTC--TCTTGACGGAAACTCTCCCTCCGGCACTATCTCGCCGATGCTG 294
|| ||| | | | ||||| ||||| || || ||| ||||||||||| ||| || ||
Sbjct 257 AGACGGA-TC-TAGCGTTCTTGGCGGAATCTTTCTCTCTGGCACTATCTCCCCGTTGTTG 314
Query 295 GCCAAACTTCAACACCTCGAGAG-GA-TTCTTCTCACCTCTCTTCGAAAGATTACTGGTC 352
|||||||||||||||| ||| | || ||| | | | |||| |||||||||| ||||| |
Sbjct 315 ACCAAACTTCAACACCTTGAG-GTGATTTCCT-TAATCTCTTTTCGAAAGATGACTGG-C 371
Query 353 -CTTTTCCTC-AATTCATTTTCCGATTACCAAAGCTAAATTA-CATAAACATCCAAG-GT 408
||||||||| ||| |||| |||||||||||||||| || | |||| || || | |
Sbjct 372 TCTTTTCCTCTGTTTC-TTTTTCGATTACCAAAGCTAAGGTACCTTAAA-AT-CATGAAT 428
Query 409 TGCCTTCTCTCTGGTCCCCTTCCAGCCAACATCGGCGA-GCTA-AGTCAATT-GAAAACT 465
| |||| | ||||| |||||||||||||||||| | |||| | || || ||| ||
Sbjct 429 AATCATCTCCCCGGTCCACTTCCAGCCAACATCGGC-ACGCTACA-CCAGTTGGAAGAC- 485
Query 466 TTAGTTATCGACGGAAA-CATGTTCACGGGTCATATTCCAAGTTCGATAGCCAATTTGAC 524
|| || |||| ||||| || |||||| ||||| || || ||||| ||| ||||||||||
Sbjct 486 CTAATTCTCGAGGGAAACCA-GTTCACTGGTCAGATCCCGAGTTCCATATCCAATTTGAC 544
Query 525 TCGGTTAACTT-GGCTTAACCTCGGCAACAACCGCCTCTCTGGCACCATTC-CAAACATA 582
| |||| | || |||| || || ||| |||||||||||||||||||| || || | |||
Sbjct 545 TAGGTT-ATTTCGGCTCAATCTTGGCGGCAACCGCCTCTCTGGCACCA-TCTCAGATATA 602
Query 583 TTTAAATCCATGAAAG-AGCT-CAATTC-TCTTGATCTCTCCCGCAACGGATTTTTC-GG 638
|||||| ||||| | | | || ||| | |||||||||||||||||||||| || || ||
Sbjct 603 TTTAAACCCATG-ACGAACCTCCAA--CATCTTGATCTCTCCCGCAACGGA-TTCTCTGG 658
Query 639 GAGACTTCCTCCGTCGATTGCTTCGCTTGCACCAACTCTCTATTACCTCGATCTGAGCCA 698
|| ||||||||| ||| || | ||||||||||| || ||| | || ||||||||||||||
Sbjct 659 GAAACTTCCTCCATCGTTTTCATCGCTTGCACCGACCCTCAAATATCTCGATCTGAGCCA 718
Query 699 GAACAATCTCTCGGGGACGATCCCAAACTATTTATCAAGGTTTGAGGCGCTCTCCACATT 758
||||||||||||||| ||||| || ||||||||||||| || ||| |||| ||||||||
Sbjct 719 GAACAATCTCTCGGGAACGATTCCGGACTATTTATCAAGATTCGAGACGCTTTCCACATT 778
Query 759 GGTACTCTCGAAGAATAAGTACTCGGGGGTCGTGCCAATGAGTTTCACCAATCTGATCAA 818
||| ||||| |||||| ||||||||||||| ||||||| ||||||| | ||| | | ||
Sbjct 779 GGTTCTCTCCAAGAATCAGTACTCGGGGGTTGTGCCAACGAGTTTCGCTAATTTAACCAG 838
Query 819 CATT-ACCAATCTTGATCTCTCCCACAATCTTCT-AACTGGTCCATTCCCTGTATTGAAA 876
||| || | ||| ||||||||||||||||| || ||| |||||||||| || |||||
Sbjct 839 TATTTACTA-TCTCGATCTCTCCCACAATCT-CTTAACCGGTCCATTCCATGCCTTGAAG 896
Query 877 AGCATTAACGGCATTGAATCTCTGGATTTGTCGTACAAC-AAGTTTCACCTGAAAACGAT 935
|| | | |||| | | ||| || || | ||||||||| || ||| |||||||||| ||
Sbjct 897 AGTAGCATCGGC-T--A-TCT-TG-ATCTATCGTACAACCAA-TTTAACCTGAAAACCAT 949
Query 936 TCCAAAATGGATGATATCGTC-ACCA-TCCATCTACTCATTGAAGTTGGCAAAATGTGGG 993
||| ||||| ||| ||||| || | | | |||||| | |||||||| ||||| |
Sbjct 950 TCCGGAATGGGTGACCTCGTCGACGAGTT--TGTACTCACTAAAGTTGGCTAAATGCAGT 1007
Query 994 CTGAAGAT-AAGCTTA-GATGATTGGAAGCTAGC-AGGGACCTACTACTATGATTC-CAT 1049
| ||||| || |||| | ||||||| || || | | ||| | | | | | | |||
Sbjct 1008 ATCAAGATGAA-CTTAAGC-GATTGGAGGCCAGTGAAG-ACCAAATTGT-TCAATAACAT 1063
Query 1050 CGATCTGTCTGAAAACGAGATCTCAGGGAGTCCGGCTAAG-TTCCTCAGCCAGATGAAGT 1108
||||||||| ||||||||| ||||||||||||| | | | ||||| | | ||| | ||
Sbjct 1064 CGATCTGTCCGAAAACGAGTTCTCAGGGAGTCCAAC-ATGGTTCCTAAACAAGACGGAGG 1122
Query 1109 ATCTGAT-GGAGTTCCGAG-CGGCAGGGAA-CAAACTCCGATTCGATTTGGGGAAGCTGA 1165
|||| || |||||||| || || | ||||| |||||||| ||| || |||||||| |||
Sbjct 1123 ATCT-ATTGGAGTTCC-AGGCGTC-GGGAAACAAACTCCAATTTGACATGGGGAAGTTGA 1179
Query 1166 CGTTT-GTGAGGACTCTT-GAAACCTTGGATTTGTCAAGGAACTTGATATTCGGGAGAG- 1222
|||| | | | | ||| ||| | |||||| | |||||||||||| |||| |||| ||
Sbjct 1180 -GTTTCGCAAAGTCACTTAGAATC-TTGGATCTATCAAGGAACTTGGTATTTGGGA-AGG 1236
Query 1223 TGC--TGGCAACATTTGCTGGACTGAAGACAA-TGAACGTGAGTCAAAACCATCTTTGCG 1279
||| ||| | || | ||| |||||||| || | || |||||||||| |||||||| |
Sbjct 1237 TGCCATGG-A-CAGTGGCTAAACTGAAGA-AACTAAATTTGAGTCAAAATCATCTTTGTG 1293
Query 1280 GAAAACTTCCGGTGACAAAGTTCCCGGCCAGTGYGTTTGCGGGTAACGACTGTCTTTGTG 1339
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1294 GAAAGCTTCCGGTGACAAAGTTCCCGGCCAGCGCGTTTGCGGGTAACGACTGTCTTTGTG 1353
Query 1340 GCTCTCCACTTTCTCCTTGTAAAG-TGTAGTGGCAAGAAAACTATA 1384
|||||||||||||||||||||||| | ||| ||||| | | |||||
Sbjct 1354 GCTCTCCACTTTCTCCTTGTAAAGCT-TAGCGGCAATATATCTATA 1398
> Ahg932896 jgi|Araly1|932896|scaffold_400884.1
Length=1487
Score = 381 bits (206), Expect = 8e-105
Identities = 638/840 (76%), Gaps = 58/840 (7%)
Strand=Plus/Plus
Query 553 AACCGCCTCTCTGGCACCATTCCAAACATATTT-AAATCCATG-AAAGAGCTCAATTCTC 610
||||| |||||||| ||||| || | || ||| ||||||||| | ||||| | ||
Sbjct 649 AACCGTCTCTCTGGAACCATCCCGGATAT-TTTCAAATCCATGCCTA-AGCTC-CGTATC 705
Query 611 TTGA-TCTCTCCCGCAACGGATTTTTCGGGA-GACTTCCTCCGTCGATTGCTTCGCTTGC 668
| | |||||| |||||| |||| | ||||| | || ||||||||||| || || || ||
Sbjct 706 CTCACTCTCTCTCGCAACAGATTCTCCGGGACG-CTCCCTCCGTCGATAGCCTCACTCGC 764
Query 669 ACCAACT-C-T-CTATTACCTCGATCTGA-GCCAGAACAATCTCTCGGGGACGATCCCAA 724
|| | | | | || | | || || | | ||||||||||||||||| |||| || |
Sbjct 765 GCC-GGTGCTTGC-GTT-CTTGGAGCT-AGGTCAGAACAATCTCTCGGGCTCGATACCGA 820
Query 725 ACTATTTATCAAGGTTTGA-GGCGCTCTCCACATTGGTA-CTCTCGAAGAATAAGTACTC 782
||||||||||| | || | | |||| |||| ||| | ||||| ||||| ||| |||
Sbjct 821 GCTATTTATCAA-GATTCATGAAGCTCGACACACTGG-ATCTCTCCAAGAACCAGTTCTC 878
Query 783 GGGGGTCGTGCCAATGAGTTTCACCAATCTGATC-AACATTACCAATCTTGATCTCTCCC 841
|| |||||||||| |||||| |||| |||| | || ||| | ||| | ||||||| |
Sbjct 879 CGGAGTCGTGCCAAAGAGTTTGGCCAAGCTGA-CAAAAATTGCTAATATCAATCTCTCTC 937
Query 842 ACAATCTTCTAACTGGTCCATTCCCTG---T-ATTGAAAAGCATTAACGGCATTGAATCT 897
||||||||||||| | ||||||||||| | || | |||| | | || | ||| | |
Sbjct 938 ACAATCTTCTAACCGATCCATTCCCTGTTTTAATCGTAAAG-AATGACATC-TTG-A-CC 993
Query 898 CTGGATTTGTCGTACAACAAGTTTCACCTGAAAACGATTCCAAAATGGATGATATC-GTC 956
|| ||| |||||||||||||||||||| || ||||||| || ||||| ||| || | |
Sbjct 994 CTAGATCTGTCGTACAACAAGTTTCACATGGAAACGATCCCGGAATGGGTGACCTCAG-C 1052
Query 957 -ACCATCCATCTACTCATTGAAGTTGGCAAAATGTGGGCTGAAGAT-AAGCTTAGATGAT 1014
|| |||| | | ||| |||||| |||| |||||||| | ||||| || ||||||||||
Sbjct 1053 GACGATCC-TTTCCTCTTTGAAGCTGGCTAAATGTGGAATCAAGATGAA-CTTAGATGAT 1110
Query 1015 TGG-AAGCTAGCAGG-GACCT-A-CTACTATGATTCCATCGATCTGTCTGAAAACGAGAT 1070
||| || | | ||| | || | || ||||| |||||||||||| || || ||||||||
Sbjct 1111 TGGAAAAC-A--AGGCAAACTGATCT-CTATGTTTCCATCGATCTTTCAGACAACGAGAT 1166
Query 1071 CTCAGGGAGTCCGGCT-AAGTTCCT-CAGCCAGATGAAGTATCTGA-TGGAGTTCCGAGC 1127
|||||||||||||| | | |||| | || | | | ||| || | |||||| | |
Sbjct 1167 CTCAGGGAGTCCGG-TGAGGTTCTTGAAGGAACAAG-GGTACCT-ACGGGAGTTTCTAAT 1223
Query 1128 GGCAGGGAACAAACTCCGATTCGATTTGGGGAAGCTGACGTTTGT-GAGGACTCTTGAAA 1186
| | |||||||||||||||||||||||||||||||||| |||| | || || || || |
Sbjct 1224 GTCGGGGAACAAACTCCGATTCGATTTGGGGAAGCTGA-GTTTTTCGAATACGCTCGAGA 1282
Query 1187 C-CTTGGATTTGTCAAGGAACTT-GATATTCGGGAGAGTGCTGGCAACATTTGCTGGACT 1244
| |||| || ||||||||||||| | | ||||||| ||||| ||| | || || || |
Sbjct 1283 CGCTTG-ATCTGTCAAGGAACTTAG-TGTTCGGGAAAGTGCCGGCGAGGTTGGCCAGATT 1340
Query 1245 GAAGACAATGAACGTGAGTCAAAACCATCTTTGCGGAAAACTTCCGGTGACAAAGTTCCC 1304
||||||| | ||| ||||||||||||||||||| || |||||||||| ||| ||||| ||
Sbjct 1341 GAAGACACTAAACTTGAGTCAAAACCATCTTTGTGGGAAACTTCCGGCGACCAAGTTTCC 1400
Query 1305 GGCCAGTGYGTTTGC-GGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCCTTGTAAAG 1363
| |||| |||||| ||| ||||||||||| || |||||||||||| || ||||||||
Sbjct 1401 AGAAAGTGTGTTTGCCGGG-AACGACTGTCTCTGCGGCTCTCCACTTGGTCATTGTAAAG 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5