BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G33660.1

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933328 jgi|Araly1|933328|scaffold_401316.1                        204    4e-52
  Ahg470824 jgi|Araly1|470824|fgenesh2_kg.1__778__AT1G07890.1          180    6e-45


> Ahg933328 jgi|Araly1|933328|scaffold_401316.1
Length=326

 Score =  204 bits (110),  Expect = 4e-52
 Identities = 133/144 (92%), Gaps = 2/144 (1%)
 Strand=Plus/Plus

Query  170  CACCTCCTGAGGGTCGTCTCCCTGATGCTACAAAAGGTTTTGATCTGTTGAGAGATGTAT  229
            ||||||  ||||||||||| |||||||||||||| ||||||||||  ||||| |||||||
Sbjct  164  CACCTCGAGAGGGTCGTCTTCCTGATGCTACAAAGGGTTTTGATCACTTGAGTGATGTAT  223

Query  230  TTGCTAAGCGGATGGGCTTGTCTGACAAGGACATTGTCGCTTTATCTGGAT-CCCACACT  288
            ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct  224  TTGCTAAGCAGATGGGCTTGTCTGACAAGGACATTGTCGCTTTATCTGG-TGCCCACACT  282

Query  289  CCTATTTCTCCATCTCAGAGCTAA  312
            ||||||||||||| ||||||||||
Sbjct  283  CCTATTTCTCCATTTCAGAGCTAA  306


> Ahg470824 jgi|Araly1|470824|fgenesh2_kg.1__778__AT1G07890.1
Length=1166

 Score =  180 bits (97),  Expect = 6e-45
 Identities = 178/213 (84%), Gaps = 21/213 (10%)
 Strand=Plus/Plus

Query  78   GGTGCTGTGGCCGTTGAAGTTACTGGTGGCCCTAAAATTCATTTCCACCCTTGAAGAGAG  137
            |||| |||||||||||||||||||||||||||| |||||| ||||||||| |       |
Sbjct  491  GGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGAAATTCCTTTCCACCC-T-------G  542

Query  138  GTTAATCATTCCTGAGAGTGACAAGCCCCATACACCTCCTGAGGGTCGTCTCCCTGATGC  197
            |   |  |     ||||| |||||||||||  ||||||||||||||||||| ||||||||
Sbjct  543  G---A--A-----GAGAG-GACAAGCCCCAGCCACCTCCTGAGGGTCGTCTTCCTGATGC  591

Query  198  TACAAAAGGTTTTGATCTGTTGAGAGATGTATTTGCTAAGCGGATGGGCTTGTCTGACAA  257
            ||| || |||| |||||  |||||||| || |||||||||| ||||||||||||||||||
Sbjct  592  TACCAAGGGTTGTGATCACTTGAGAGACGTCTTTGCTAAGCAGATGGGCTTGTCTGACAA  651

Query  258  GGACATTGTCGCTTTATCTGGAT-CCCACACTC  289
            ||||||||||||||||||||| | |||||||||
Sbjct  652  GGACATTGTCGCTTTATCTGG-TGCCCACACTC  683



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10988809632


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5