BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33670.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922461 jgi|Araly1|922461|scaffold_103742.1 1493 0.0
Ahg922460 jgi|Araly1|922460|scaffold_103741.1 643 0.0
Ahg931207 jgi|Araly1|931207|scaffold_303664.1 545 3e-154
Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431 449 2e-125
Ahg932896 jgi|Araly1|932896|scaffold_400884.1 267 2e-70
> Ahg922461 jgi|Araly1|922461|scaffold_103742.1
Length=1413
Score = 1493 bits (808), Expect = 0.0
Identities = 1220/1414 (86%), Gaps = 47/1414 (3%)
Strand=Plus/Plus
Query 1 ATGAACTCTTGTTCCTTCCCTCTCTTCCTC-TT-T----G---TTATCTTTCTCCGGTGT 51
|||||||||| |||||||||||||||| || || | | |||||||||||||||||
Sbjct 22 ATGAACTCTTATTCCTTCCCTCTCTTCATCTTTGTCGCGGTCTTTATCTTTCTCCGGTGT 81
Query 52 TTAAGTTCCACGGGAGCTGCCACATGTCATCCTGATGACAAAGCGGGTCTTTTAGCTTTC 111
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 82 TTAAGTTCCACGGGAGCTGCCACATGTCATCCTGATGACGAGGCAGGTCTTTTAGCTTTC 141
Query 112 AAATCGGGTATAACCCAAGATCCTTCGGGTATTCTCAGCTCATGGCAGAAA-GATATTGA 170
||||| ||||||||||||||||||| ||||||||||||||| ||| ||||| | || | |
Sbjct 142 AAATCAGGTATAACCCAAGATCCTTTGGGTATTCTCAGCTCCTGGAAGAAAAG-TACTAA 200
Query 171 CTGCTGCTCCTGGTACGGTATCTTTTGCCTCCCTACGATTCATGGCGACCGCGTCACCAT 230
||||||||||||||| ||| |||||||||||||| | | ||| |||||||||||||
Sbjct 201 CTGCTGCTCCTGGTATGGTGTCTTTTGCCTCCCTGTTAACCCCGGCAACCGCGTCACCAT 260
Query 231 GA-TGGCATTAGACGGAAATACGGATGT-TGGTGAAACCTTTCTCTCCGGCACTATCTCA 288
| ||||| |||| |||||||| ||| | ||| |||| ||||||||||||||||||||
Sbjct 261 -ACTGGCACTAGATGGAAATACAGAT-TCTGGCAAAACTTTTCTCTCCGGCACTATCTCG 318
Query 289 CCGTTGCTCGCCAAACTCCATCACCTCAACGAGATTCGCCTCACCAATCTTCGAAAGATC 348
|||||||| || || ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 319 CCGTTGCTAGCTAAGCTCCAGCACCTCAACGAGATTCGCCTCACCGATCTTCGAAAGATC 378
Query 349 ACTGGATCTTTTCCCCACTTCCTCTTCAAATTACCAAAGCTAAGGACTGTTTACTTAGAG 408
||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||
Sbjct 379 ACTGGATCTTTTCCCCAATTCCTTTTCAAATTACCAAAGCTAAAGATTGTTTACTTAGAG 438
Query 409 AATAACCGTCTCTCTGGTCCCCTTCCTGCCAACATCGGTGCACTAAGTAATTTGGAAA-T 467
|||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||| |
Sbjct 439 AATAACCGTCTCTCTGGTCCCCTTCCGGACAACATCGGTGCATTAAGTAAGTTGGAAACT 498
Query 468 TTTGAGTGTGGCGGGAAACCGGTTCAGCGGTTCGATCCCAAGTTCGATGTCTAAGTTAAC 527
||| ||| ||| |||||||||||||| |||| ||||||| |||||||| || || || ||
Sbjct 499 TTT-AGTCTGGAGGGAAACCGGTTCACCGGTCCGATCCCGAGTTCGATTTCCAATTTTAC 557
Query 528 TAGCTTACTCCAACTCAAGCTCAACGGTAACCGCCTTTCTGGCATCTTCCCAGACATATT 587
||| |||||||||||||| ||||||||||||||| ||||||||||| |||| || |||||
Sbjct 558 TAGATTACTCCAACTCAAACTCAACGGTAACCGCTTTTCTGGCATCATCCCTGATATATT 617
Query 588 CAAATCCATGCGGCAACTTCGATT-TCTTGATCTCTCC-AGCAACAGATTCTCTGGAAAC 645
|||||||||||| ||||| | ||| ||| ||||||||| || |||||| ||||||||||
Sbjct 618 CAAATCCATGCGACAACTCC-ATTATCTCGATCTCTCCCAG-AACAGAATCTCTGGAAAA 675
Query 646 CTTCCTTCATCGATTGCATCTCTTGCACCGACTCTTTCTACCCTTGAGGTGGGCCATAAC 705
||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 676 CTTCCTTCATCGATTGCATCTCTTGCACCGACTCTTTGGGCTCTTGAGGTGGGCCAGAAC 735
Query 706 AAGCTATCGGGGACTATCCCGGACTATTTATCGAGATTCGAGCTTCTCTCCGCATTAAAT 765
|| ||||||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 736 AATCTATCGGGGACTATCCCAGACTATTTATCGAGATTCGAGCT-CT-TGT-CATTAAAT 792
Query 766 CTCTCTAGGAATGGGTACACAGGGGTCGTGCCGATGAGTTTTGCCAATCTGACCA-ACAT 824
||||| |||||| | |||||||| ||||||||||||||||| ||||||| || | || |
Sbjct 793 CTCTCCAGGAATTGCTACACAGGTGTCGTGCCGATGAGTTTCACCAATCTTACTAGACTT 852
Query 825 TATCTTTCTTGATCTCTCCCACAATC-TGCTTACCGGTCCATTCCCTGTCTTGAACTCAT 883
|| | ||| |||||||||||||||| | || || |||||| |||||||| ||||||| |
Sbjct 853 TA-CAATCTCGATCTCTCCCACAATCAT-CTAACTGGTCCACTCCCTGTCATGAACTCCT 910
Query 884 TAGGCATCGAATATCTACATCTTTCGTACAACCGATTTCACCTTGAAA-CAATCCCCGAA 942
|| ||| |||||||||||||| ||||||||||||||||||||| ||| |||| ||| ||
Sbjct 911 CAGACATAGAATATCTACATCTCTCGTACAACCGATTTCACCTT-AAAGCAATTCCCAAA 969
Query 943 TGGGTGACCTTGTCGAAGTTCATCTACTCATTGAAGCTTGCAAAATGTGGGATCAAAATG 1002
|||||||||| ||||| | |||| ||||| |||||||| ||||||||||||||||| |||
Sbjct 970 TGGGTGACCTCGTCGAGGCTCATGTACTCGTTGAAGCTAGCAAAATGTGGGATCAAGATG 1029
Query 1003 AGCTTAGACCATTGGATGCCAGCAGACACCTCTTTC-TACCATCACATTGATTTTTCGGA 1061
||||||||| |||||| |||| | || || |||| ||| ||||||| ||||| || ||
Sbjct 1030 AGCTTAGACGATTGGAAGCCAT-A--CAGCT-TTTCGTACAATCACATGGATTTGTCAGA 1085
Query 1062 AAACGAGATCTCAGGGAGTCCAATAAGGTTTTTTAACCAGATGGATTTTATGG-TGGAGT 1120
|||| | ||||||||||||||| ||||||||| ||| |||||| |||| || || |||
Sbjct 1086 AAACAAAATCTCAGGGAGTCCAGCAAGGTTTTTGAACAAGATGGCTTTTTTGACTG-AGT 1144
Query 1121 TCCATGCACCGGGGAACAAACTCC-AGTTCGACTTGGGGAAGCTA-AAGTTTGGAATCTT 1178
|||| ||| ||||||||||||| | | |||||||||||||| | | || ||||| |||||
Sbjct 1145 TCCACGCAGCGGGGAACAAACTTCGA-TTCGACTTGGGGAAAC-AGAATTTTGGGATCTT 1202
Query 1179 CTTGAAAACCCTGGATTTGTCAAGGAACTTGGTATTTGGGAAGGTACCGGTGACGGTGAC 1238
||||| |||||||||| |||||||||||||| |||||||||| ||||| | |||| |||
Sbjct 1203 CTTGACAACCCTGGATCTGTCAAGGAACTTGATATTTGGGAACGTACCCGCGACGCTGAT 1262
Query 1239 CAGACTGCAGACACTAAACTTGAGTCAAAACCATCTTTGCGGAAAGCTTCCA-TCGACAA 1297
|||| |||||||| | |||||||||||||| |||||||||||||||||||| | |||||
Sbjct 1263 CAGATTGCAGACATTGAACTTGAGTCAAAATCATCTTTGCGGAAAGCTTCCGGT-GACAA 1321
Query 1298 AGTTCCCGGCTAGTGCTTTTGTCGA-TAACAAGTGTCTTTGCGGCTTTCCACTTTCTCCT 1356
|||||||||| || || |||| || |||| | |||||||||||||||||||||| |||
Sbjct 1322 AGTTCCCGGCCAGCGCGTTTG-CGGGTAACGACTGTCTTTGCGGCTTTCCACTTTATCCG 1380
Query 1357 TGTAAAGCTTAGGGACAAGAAAAGC-ACAGTTTT 1389
|||||||||||||| ||| |||| | ||| ||||
Sbjct 1381 TGTAAAGCTTAGGGGCAATAAAA-CTACATTTTT 1413
> Ahg922460 jgi|Araly1|922460|scaffold_103741.1
Length=1403
Score = 643 bits (348), Expect = 0.0
Identities = 1072/1411 (76%), Gaps = 92/1411 (7%)
Strand=Plus/Plus
Query 1 ATGAACTCTTGTTCCTTCCCTCTCTTCCTCTTT---G---TTATCTTTCTCCGGTGTTTA 54
|||||||||| || ||| |||||||| ||||| | |||||||||||||||||| |
Sbjct 21 ATGAACTCTTACTCTTTCACTCTCTTCATCTTTGCCGCCATTATCTTTCTCCGGTGTTCA 80
Query 55 AGTTCCACGGGAGCTGCCACATGTCATCCTGATGACAAAGCGGGTCTTTTAGCTTTCAAA 114
||||| || ||||||||| ||||| |||||||| | |||||||||||||||||||||
Sbjct 81 AGTTCGACCAAAGCTGCCACTTGTCACCCTGATGATGAGGCGGGTCTTTTAGCTTTCAAA 140
Query 115 TCGGGTATAACCCAAGATCCTTCGGGT-ATTCTCAGCTCATGGCAGAAAGATATTGACTG 173
|||||||||||||||||||||| ||| || || | ||| ||| |||||| || ||| ||
Sbjct 141 TCGGGTATAACCCAAGATCCTTTGGGCCAT-CTGAACTCGTGGAAGAAAGGTACTGATTG 199
Query 174 CTGCTCCTGG-TACGGTATCTTTTGCCTCCCTACGATTCATGG-CGACCGCGTCACCATG 231
|||||| ||| | || || || | | | || | | || | | |||||||| ||
Sbjct 200 CTGCTCATGGGT--GG---CTGTTACTTGC--AC--T--AGGGGCAATCGCGTCAC--TG 246
Query 232 A--TGG-CATTAGACGGAAATA-CGGATGTTGGTGAAACCTTTCTCTCCGGCACTATCTC 287
| | | | ||||||| || || | |||| | || ||||||||| |||||||||||
Sbjct 247 AACTAAACCT-AGACGGATCTAGCGT-TCTTGGCGGAATCTTTCTCTCTGGCACTATCTC 304
Query 288 ACCGTTGCTCG-CCAAACTCCATCACCTCAACGAGATTCGCCTCAC-CAATCTTCGAAAG 345
|||||| | | ||||||| || ||||| | | |||| ||| | | | ||||||||
Sbjct 305 CCCGTTGTT-GACCAAACTTCAACACCTTGAGGTGATTT-CCTTAATCTCTTTTCGAAAG 362
Query 346 ATCACTGGATCTTTTCCCCACTTCCTCTT-CAAATTACCAAAGCTAAGG-ACTGTTTACT 403
|| ||||| |||||||| | || || || | | ||||||||||||||| || || |
Sbjct 363 ATGACTGGCTCTTTTCCTCTGTTTCTTTTTCGA-TTACCAAAGCTAAGGTACC-TTAAAA 420
Query 404 T-AGAGAATAACCGTCTCTCTGGTCCCCTTCCTGCCAACATCGGTGCACTA-AGTAATTT 461
| | |||||| | |||| | ||||| ||||| ||||||||||| | ||| | | ||
Sbjct 421 TCAT-GAATAATCATCTCCCCGGTCCACTTCCAGCCAACATCGGCACGCTACACCAGTT- 478
Query 462 GGAA-ATTTTGAGTGTGGCGGGAAACCGGTTCAGC-GGTTC-GATCCCAAGTTCGATGTC 518
|||| | | | | | | |||||||| ||||| | ||| | |||||| ||||| || ||
Sbjct 479 GGAAGACCTA-ATTCTCGAGGGAAACCAGTTCA-CTGGT-CAGATCCCGAGTTCCATATC 535
Query 519 TAAGTTAACTAGCTTACTCCAACTCAAGCTCAACGGTAACCGCCTTTCTGGCATCTTCCC 578
|| || ||||| ||| | | ||||| || ||| |||||||| ||||||| | || |
Sbjct 536 CAATTTGACTAGGTTATTTCGGCTCAATCTTGGCGGCAACCGCCTCTCTGGCACCATCTC 595
Query 579 AGACATATTCAAATCCATG-CGGCAACTTCGATT-TCTTGATCTCTCCAGCAACAGATTC 636
||| ||||| ||| ||||| || ||| || | ||||||||||||| ||||| |||||
Sbjct 596 AGATATATTTAAACCCATGACG--AACCTCCAACATCTTGATCTCTCCCGCAACGGATTC 653
Query 637 TCTGG-AAACCTTCCTTCATCGATTGCATCTCTTGCACCGACTCTTTC-TACCCTTGAGG 694
||||| |||| ||||| ||||| || |||| ||||||||||| || || | | ||
Sbjct 654 TCTGGGAAAC-TTCCTCCATCGTTTTCATCGCTTGCACCGACCCTCAAATATC-TCGATC 711
Query 695 TGGGCCATAACAAGCTATCGGGGACTATCCCGGACTATTTATCGAGATTCGAG-CTTCTC 753
|| |||| ||||| || ||||| || || |||||||||||||| ||||||||| | ||
Sbjct 712 TGAGCCAGAACAATCTCTCGGGAACGATTCCGGACTATTTATCAAGATTCGAGACG-CTT 770
Query 754 TCCGCATTAAATCTCTCTAGGAATGGGTACACAGGGGTCGTGCCGATGAGTTTTGCCAAT 813
||| |||| |||||| | |||| |||| | ||||| ||||| | |||||| || |||
Sbjct 771 TCCACATTGGTTCTCTCCAAGAATCAGTACTCGGGGGTTGTGCCAACGAGTTTCGCTAAT 830
Query 814 CTGACCAACATT-ATCTTTCTTGATCTCTCCCACAATCTGCTTA-CCGGTCCATTCCCTG 871
| |||| ||| | || ||| ||||||||||||||||| |||| |||||||||||| ||
Sbjct 831 TTAACCAGTATTTA-CTATCTCGATCTCTCCCACAATCT-CTTAACCGGTCCATTCCATG 888
Query 872 TCTTGAACTCATTAGGCATCGAATATCTACATCTTTCGTACAACCGATTTCACCTTGAAA 931
|||||| | ||| ||||| ||||| |||| |||||||||| |||| |||| ||||
Sbjct 889 CCTTGAAG--AGTAG-CATCGGCTATCTTGATCTATCGTACAACCAATTTAACCT-GAAA 944
Query 932 -CAATCCCCGAATGGGTGACCTTGTCGA--AGTTCATCTACTCATTGAAGCTTG-CAAAA 987
| || || ||||||||||||| ||||| |||| | |||||| | ||| ||| | |||
Sbjct 945 ACCATTCCGGAATGGGTGACCTCGTCGACGAGTT--TGTACTCACTAAAG-TTGGCTAAA 1001
Query 988 TGTGGGATCAAAATGAGCTTAGACC-ATTGGATGCCAGCAGAC-ACCTCTTTCTACCATC 1045
|| | ||||| |||| |||| | | |||||| ||||| || ||| || | | ||
Sbjct 1002 TGCAGTATCAAGATGAACTTA-AGCGATTGGAGGCCAGT-GAAGACCAAATTGTTCAATA 1059
Query 1046 ACATTGATTTTTCGGAAAACGAGATCTCAGGGAGTCCAATAAGGTTTTTTAACCAGATGG 1105
|||| ||| | || ||||||||| ||||||||||||||| | |||| | ||| ||| ||
Sbjct 1060 ACATCGATCTGTCCGAAAACGAGTTCTCAGGGAGTCCAACATGGTTCCTAAACAAGACGG 1119
Query 1106 ATT-T-TATGGTGGAGTTCCATGCACCGGGGAACAAACTCCAGTTCGACTTGGGGAAGCT 1163
| | ||| |||||||||| || |||| ||||||||||| || ||| |||||||| |
Sbjct 1120 AGGATCTAT--TGGAGTTCCAGGCGTCGGGAAACAAACTCCAATTTGACATGGGGAAGTT 1177
Query 1164 AAAGTTTGG-AA--TCTTCTTGAAAACCCTGGATTTGTCAAGGAACTTGGTATTTGGGAA 1220
| |||| | || || ||| | || | ||||| | |||||||||||||||||||||||
Sbjct 1178 GA-GTTTCGCAAAGTCA-CTT-AGAATCTTGGATCTATCAAGGAACTTGGTATTTGGGAA 1234
Query 1221 GGTACCGGTG-ACGGTGACCAGACTGCAGACACTAAACTTGAGTCAAAACCATCTTTGCG 1279
||| || || || ||| | | |||| ||| |||||| ||||||||||| |||||||| |
Sbjct 1235 GGTGCCA-TGGACAGTGGCTAAACTGAAGAAACTAAATTTGAGTCAAAATCATCTTTGTG 1293
Query 1280 GAAAGCTTCCA-TCGACAAAGTTCCCGGCTAGTGCTTTTGTCGA-TAACAAGTGTCTTTG 1337
|||||||||| | ||||||||||||||| || || |||| || |||| | ||||||||
Sbjct 1294 GAAAGCTTCCGGT-GACAAAGTTCCCGGCCAGCGCGTTTG-CGGGTAACGACTGTCTTTG 1351
Query 1338 CGGCTTTCCACTTTCTCCTTGTAAAGCTTAG 1368
|||| |||||||||||||||||||||||||
Sbjct 1352 TGGCTCTCCACTTTCTCCTTGTAAAGCTTAG 1382
> Ahg931207 jgi|Araly1|931207|scaffold_303664.1
Length=1412
Score = 545 bits (295), Expect = 3e-154
Identities = 1063/1421 (75%), Gaps = 103/1421 (7%)
Strand=Plus/Plus
Query 1 ATGAACTCTTGTTCCTTCCCTCTCTTCCTCTT---TG---TTATCTTTCTCCGGTGTTTA 54
||||||||||| || ||| |||| ||| |||| | ||||||||||||||||||||
Sbjct 21 ATGAACTCTTGCTCATTCACTCTTTTCATCTTGGCCGCCATTATCTTTCTCCGGTGTTTA 80
Query 55 AGTTCCACGGGAGCTGCCACATGTCATCCTGATGACAAAGCGGGTCTTTTAGCTTTCAAA 114
|||||||| |||||||||||||||||||||||||| | || ||||| ||||| ||||||
Sbjct 81 AGTTCCACTAGAGCTGCCACATGTCATCCTGATGACGAGGCAGGTCTCTTAGCCTTCAAA 140
Query 115 TCGGGTATAACCCAAGATCCTTCGGGTATTCTCAGCTCA-TGGCAGAAAGATATTG-ACT 172
||||||||||||| ||||| || ||| ||| | ||| || ||| |||||| || | | |
Sbjct 141 TCGGGTATAACCCGAGATCGTTTGGGCATTTTTAGC-CAGTGGAAGAAAGGTACTCCA-T 198
Query 173 GCTGCTCCTGGTACGG-TATCTTTTGCCTCCCTACGATTCATGGCGACCGCGTCACCATG 231
| || || ||| | || | || ||||| || | | | | ||||||||||||||
Sbjct 199 GTTGTTCATGG-ATGGGTGTCATTTGCATCAC--C-A---A---CGACCGCGTCACCAC- 247
Query 232 A-TG-GCATTAGACGGAAATACGGATGTTGGTGAAACCTTTC-TCTCCGGCACTATCTCA 288
| || | || || ||| ||| | | |||| ||| | | | | |||||||| ||||||
Sbjct 248 ACTGAGAATAAG-CGGCTCTACCGTTCTTGGCCAAAGCGT-CGTTTCCGGCACAATCTCA 305
Query 289 CCGT-TGCTCGCCAAACTCCATCACCTCAACGAGATTCGCCTCACCAATCTTCGAAAGAT 347
|||| | || |||||||| || |||||| | | | || | | ||| |||||| ||| ||
Sbjct 306 CCGTCT-CTGGCCAAACTTCAGCACCTCGAGGGGGTTTACTTTACCTATCTTCAAAATAT 364
Query 348 CACTGGATCTTTTCCCCACTTCCTCTTCAAATTACCAAAGCTAAGG-ACTGTTTACTTAG 406
|| || ||||||||||| || || ||||||||||||||| ||| | | | || |||||
Sbjct 365 TACAGGGTCTTTTCCCCAATTTCTTTTCAAATTACCAAAGTTAAAGTA-TATTGACTTA- 422
Query 407 A-GAATAAC-CGTCTCTCTGGTCCCCTTCCTGCC-AACATCGGTGCACTAAGTAATTTGG 463
| | || | || ||||| ||||||||||| | | ||||||| ||| ||||| | ||||
Sbjct 423 ACGGGTA-CTCGCCTCTCCGGTCCCCTTCC-GACTAACATCGATGCGCTAAGCCAGTTGG 480
Query 464 AA-ATTTTGAGTGTGGCGGGA-AACCGGTTCAGC-GGTTCGATCCCAAGTTCGATGTCTA 520
|| | || | | ||| || | |||| ||||| | ||| | ||||| | ||| || ||||
Sbjct 481 AAGAGTTA-ATTCTGGAGG-ACAACCAGTTCA-CTGGTCCAATCCCGACTTCAATATCTA 537
Query 521 AGTTAACTAGCTTA-CTCCAACTCAAG-CTCAACGGTAACCGCCTTTCTGGCATCTTCCC 578
| || ||| | ||| || ||| | ||| || |||||| | ||||||| | ||||
Sbjct 538 ATTTGACTCGGTTAACTTGGT-TCA-GTCTCCGTGGAAACCGCATCTCTGGCACCATCCC 595
Query 579 AGACATATTCAAATCCATG-CGGCAACTTCGATTTCTTGATCTCTCCAGCAA-CAGATTC 636
||| || |||||||||||| || || ||| ||||||| | ||||||| |||| | ||||
Sbjct 596 AGATATTTTCAAATCCATGACG-CAGCTTGGATTTCTCGCTCTCTCCCGCAATC-GATTA 653
Query 637 TCTGG-AAACCTTCCTTCATCGATTGCATCTCTTGCACCGACTCTT-TC-TACCCTTGAG 693
|| || |||| ||||| | || ||||||| ||||| || | ||| | | || | ||
Sbjct 654 TCCGGGAAAC-TTCCTCCGTCTTTTGCATCGCTTGCGCCAAGTCTCGTGGT-CC-TCGAA 710
Query 694 GTGGGCCATAACAAGCTATCGGGGACTATCCCGGACTATTTATCGAGATTCGAGCTTCTC 753
| ||| ||||| || ||||||| ||||| |||||||||| |||||| || |
Sbjct 711 CTAAACCAAAACAATCTCTCGGGGAAGATCCCTAACTATTTATCAAGATTCAAGGAGATG 770
Query 754 TCCGCATTAAATCTCTCTAGGAATGGGTACACAGGGGTCGTGCCGATGAGTTTTGCCAAT 813
||| |||| ||||||| | |||| ||| | ||||||||||| | |||||| ||||||
Sbjct 771 TCCTCATTGTATCTCTCCAAGAATCAATACTCTGGGGTCGTGCCAAAGAGTTTCGCCAAT 830
Query 814 CTGACCAA-CATTA-TCTTTCTTGATCTCTCCCACAATCTGCTTACCGGTCCATTCCCTG 871
||||||| | ||| || | ||||| |||||||||||||| || |||||||||||||| |
Sbjct 831 ATGACCAAAC-TTAATCAT-CTTGACCTCTCCCACAATCTTCTAACCGGTCCATTCCCAG 888
Query 872 TCTTGAAC-TCATTAGGCATCGAATATCTAC-------ATCTTTCGTACAACCGATTTCA 923
|||||| | || | | | | ||| ||| |||| |||||||||||||| ||
Sbjct 889 ACTTGAAGATGATC-GATAAC-ATTATTTACGCTTTGGATCTATCGTACAACCGATTCCA 946
Query 924 CCTTGAAACAATCCCCGAA-TGGGTGACCT-TGTCGAAGTTC-ATCTACTCATTGAAGCT 980
||| ||||||| || ||| |||||||||| | || | | || ||| |||| ||||||||
Sbjct 947 CCTAAAAACAATACC-GAAATGGGTGACCTCT-TC-ACGATCCATCCACTCGTTGAAGCT 1003
Query 981 TGCAAAATGTGGGATCAAAATGAGCTTAGACCATTGGATGCCAGCAG--A-CACCTCTTT 1037
| ||||| |||||||| ||||| || || |||||| ||||| || | || ||||
Sbjct 1004 AGTTAAATGCGGGATCAAGATGAGATTTGAAGATTGGAAGCCAG-AGGGAACAAAACTTT 1062
Query 1038 CTACCATCACATTGATTTTTCGGAAAACGAGATCTCAGGGAGTCCAATAAGGTTTTTTAA 1097
| || |||| || |||| ||||||||||||||||||||||||| | ||||| ||||
Sbjct 1063 TTTCCG--ACATCAATCTTTCAGAAAACGAGATCTCAGGGAGTCCAACATGGTTTCTTAA 1120
Query 1098 CCA-G-ATG-GATT-TTATGGTGGAGTTCCATGCACCGGGGAACAAACTCC-AGTTCGAC 1152
| | | | | || | |||||| |||| || || | ||||||||||||| | ||||||
Sbjct 1121 CAACGCA-GAGAATCTTATGG---AGTTTCAAGCGTCAGGGAACAAACTCCGA-TTCGAC 1175
Query 1153 TTGGGGAAGCT-AAAGTTTGGAATCTTC-TTGAAAACCCTG-GATTTGTCAAGGAACTTG 1209
|||||||||| ||| || || | | |||| | | | ||| |||||||||| |||
Sbjct 1176 ATGGGGAAGCTGAAA-TTCAAAAAAT-CGTTGAGA-CTATTAGATATGTCAAGGAATTTG 1232
Query 1210 GTATTTGGGAAGGTACCGGTGACGGTGACCAGACTGCAGACACTAAACTTGAGTCAAAAC 1269
||||||||||||||||| || ||| | || || | | ||| ||| | ||||| |||
Sbjct 1233 GTATTTGGGAAGGTACCAACAACCGTGGCTGGATTGGAAAAACTCAACGTAAGTCACAAC 1292
Query 1270 CATCTTTGCGGAAAGCTTCCA-TCGACAAAGTTCCCGGCTAGTGCTTTTG-TCGATAACA 1327
|| ||||||||||||||||| | |||||||||| ||| | | | |||| | | ||||
Sbjct 1293 CAACTTTGCGGAAAGCTTCCGGT-GACAAAGTTCAAGGCCAATACGTTTGCTGG-TAACG 1350
Query 1328 AGTGTCTTTGCGGCTTTCCACTTTCTCCTTGTAAAGCTTAG 1368
| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1351 ACTGTCTCTGCGGCTCTCCACTTTCTCCTTGTAAAGCTTAG 1391
> Ahg913177 jgi|Araly1|913177|Al_scaffold_0001_3431
Length=2796
Score = 449 bits (243), Expect = 2e-125
Identities = 610/782 (78%), Gaps = 46/782 (6%)
Strand=Plus/Plus
Query 556 AACCGCCTTTCTGGCATCTTCCCAGACATATTCAAATCCATG-CGGCAACTTC-GATTTC 613
|||||||| || |||| | ||||||| || ||| |||| ||| | | | || |||||
Sbjct 625 AACCGCCTCTCAGGCACCGTCCCAGAAATTTTCGAATCAATGAC-GTTGC-TCAAATTTC 682
Query 614 TTGATCTCTCCAGCAACAGATTCTCT-GGAAACCTTCCTTC-ATCGATTGCATCTCTTGC 671
| ||||||||| |||| |||||||| ||| | ||||| || || ||||| || || ||
Sbjct 683 TAGATCTCTCCCGCAATGGATTCTCTGGGAGA-CTTCC-TCTGTCCATTGCGTCACTCGC 740
Query 672 ACCGACTCTTTCTA-CCCTTGAGGTGGGCCATAACAAGCTATCGGGGACTATCCCGGACT 730
|||||| | | ||| |||| || || |||| ||||| || |||||| | ||||||||||
Sbjct 741 ACCGACAC-TCCTAGCCCTCAAGCTGAGCCAGAACAATCTCTCGGGGGCGATCCCGGACT 799
Query 731 ATTTATCGAGATTCGAGCTTCTCTCCG--CA-TTAAATCTCTCTAGGAATGGGTACACAG 787
|| |||| |||||| | | || || | || ||||||| | ||| ||| | |||
Sbjct 800 ATATATCAAGATTC-AAC-AGGCT-CGAAAAGTTGGATCTCTCCAAGAACCGGTTCTCAG 856
Query 788 GGGTCGTGCCGATGAGTTTTGCCAATCTGACCAACATTATCTTTCTTGATCTCTCCCACA 847
| || || |||| | |||| | |||| ||||||| |||| | |||||||||||||||||
Sbjct 857 GTGTTGTACCGAAGGGTTTCGTCAATATGACCAATATTAACAATCTTGATCTCTCCCACA 916
Query 848 ATCTGCTTACCGGTCCATTCCCTGTCTTGAAC-TCATTAGGCATCGAATATCTACATCTT 906
|||| || || || |||||||| |||||| | | | |||||||||||| ||||
Sbjct 917 ATCTTCTAACTAATCAATTCCCTGAATTGAACGTTAACA-CCATCGAATATCTTGATCTC 975
Query 907 TCGTACAACCGATTTCACCTTGAAAC-AATCCCCGAATGGGTGAC--C-TTGTCGAAGTT 962
|||||||||| |||||| || ||||| | ||| | |||||||||| | ||| || || |
Sbjct 976 TCGTACAACCAATTTCAGCTGGAAACGATTCCAC-AATGGGTGACATCGTTGCCG-AG-T 1032
Query 963 CATCTACTCATTGAAGCTTGCAAAATGTGGGATCAAAATGAGCTTAGACCATTGGATGCC 1022
| ||| || |||||||| ||||||||||||||||| |||||||||||| |||||| |||
Sbjct 1033 C-TCTTCTTGTTGAAGCTAGCAAAATGTGGGATCAAGATGAGCTTAGACGATTGGAAGCC 1091
Query 1023 AGCAGACACCTCTT-T-CTACCATCACATTGATTTTTCGGAAAACGAGATCTCAGGGAGT 1080
||| || ||| ||| | ||||||| |||| ||| | ||| ||||||||||||||||||||
Sbjct 1092 AGCGGA-ACC-CTTGTACTACCATTACATCGATCTGTCGAAAAACGAGATCTCAGGGAGT 1149
Query 1081 CCA-ATAAGGTTTTTTAACCAG--ATGGATTTTATGGTGGAGTTCCATGCACCGGGGAAC 1137
| | | |||||| || |||||| |||| | | || ||||||| | || ||||||||
Sbjct 1150 CTAGA-AAGGTTCTTGAACCAGACATGG--TATCTGCTGGAGTTTCGGGCGGCGGGGAAC 1206
Query 1138 AAACTCCAGTTCGACT-TGGGGAAGC-TAAAGTTTGGAATCTTC-TTGAAAACCCTGGAT 1194
|||||||| ||||| | ||||||| | | ||||||| || | | ||||||||||||
Sbjct 1207 AAACTCCAATTCGA-TATGGGGAA-CTTGAAGTTTGCAA-GGACGCTAAAAACCCTGGAT 1263
Query 1195 -TTGTCAAGGAACTTGGTATTTGGGAAGGTACCGGTGACGGTGA-CCAGACTGCAGACAC 1252
|| ||||||||||||||||| |||| ||| |||| || ||| | | | ||||||| ||
Sbjct 1264 CTT-TCAAGGAACTTGGTATTCGGGATGGTGCCGGCGATGGT-AGCTGGTCTGCAGAAAC 1321
Query 1253 TAAACTTGAGTCAAAACCATCTTTGCGGAAAGCTTCCATCGACAAAGTTCCCGGCTAGTG 1312
| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 1322 TGAACTTGAGTCAAAACCATCTTTGCGGAAAGCTTCCAGCTACAAAGTTCCCGGCCAGTG 1381
Query 1313 CT 1314
||
Sbjct 1382 CT 1383
> Ahg932896 jgi|Araly1|932896|scaffold_400884.1
Length=1487
Score = 267 bits (144), Expect = 2e-70
Identities = 628/854 (74%), Gaps = 63/854 (7%)
Strand=Plus/Plus
Query 547 CTCAACGGTAACCGCCTTTCTGGCATCTTCCCAGACATATTCAAATCCATGCGGC-AA-C 604
||| |||||||||| || ||||| | | |||| || || ||||||||||||| | || |
Sbjct 640 CTCGACGGTAACCGTCTCTCTGGAACCATCCCGGATATTTTCAAATCCATGC--CTAAGC 697
Query 605 TTCGATTTCTTGA-TCTCTC-CAGCAACAGATTCTCTGGAAAC-CTTCCTTCATCGATTG 661
| || | || | | |||||| | ||||||||||||| || || || ||| | ||||| |
Sbjct 698 TCCG-TATCCTCACTCTCTCTC-GCAACAGATTCTCCGG-GACGCTCCCTCCGTCGATAG 754
Query 662 CATCTCTTGCACCGACT-CTTTCTACCCTT-GAGGTGGGCCATAACAAGCTATCGGGGAC 719
| || || || ||| | ||| | ||| ||| | || || ||||| || ||||| |
Sbjct 755 CCTCACTCGCGCCG-GTGCTTGC-GTTCTTGGAGCTAGGTCAGAACAATCTCTCGGGCTC 812
Query 720 TATCCCGGA-CTATTTATCGAGATTCGA-GCTTCTCTCCGCATTAAATCTCTCTAGGAAT 777
|| || || ||||||||| |||||| | | ||| | || | ||||||| | |||
Sbjct 813 GATACC-GAGCTATTTATCAAGATTC-ATGAAGCTCGACACACTGGATCTCTCCAAGAAC 870
Query 778 GGGTACACAGGGGTCGTGCCGATGAGTTTTGCCAATCTGACCAACATTATCT-TTCTTGA 836
|| | | || |||||||| | |||||| ||||| ||||| || ||| || | | |
Sbjct 871 CAGTTCTCCGGAGTCGTGCCAAAGAGTTTGGCCAAGCTGACAAAAATT-GCTAATATCAA 929
Query 837 TCTCTCCCACAATCTGCTTACCGGTCCATTCCCTGTCTTGAACTCATTAGGCATCGA-A- 894
|||||| |||||||| || |||| |||||||||||| || || || | | | || || |
Sbjct 930 TCTCTCTCACAATCTTCTAACCGATCCATTCCCTGT-TTTAA-TCGTAAAGAAT-GACAT 986
Query 895 --T-A-TCTACATCTTTCGTACAACCGA-TTTCACCTTGAAACAATCCCCGAATGGGTGA 949
| | ||| |||| |||||||| | | |||||| | ||||| ||||| ||||||||||
Sbjct 987 CTTGACCCTAGATCTGTCGTACAA-CAAGTTTCACATGGAAACGATCCCGGAATGGGTGA 1045
Query 950 CCT-TGTCGAAGTTCATCTACTCATTGAAGCTTGCAAAATGTGGGATCAAAATGAGCTTA 1008
||| | ||| | || | | ||| |||||||| || |||||||| ||||| |||| ||||
Sbjct 1046 CCTCAG-CGACGATCCTTTCCTCTTTGAAGCTGGCTAAATGTGGAATCAAGATGAACTTA 1104
Query 1009 GACCATTGG-ATGCCA-GCAGACACCT-CTTTCTA-CCATCACATTGATTTTTCGGAAAA 1064
|| ||||| | | | ||| | | || | |||| || ||| ||| |||| || ||
Sbjct 1105 GATGATTGGAAAACAAGGCA-A-A-CTGATCTCTATGTTTC-CATCGATCTTTCAGACAA 1160
Query 1065 CGAGATCTCAGGGAGTCCAATAAGGTTTTTTAA-CCAGATGGAT-TTTATGGTGGAG-TT 1121
|||||||||||||||||| | ||||| || || | | || | || | |||| ||
Sbjct 1161 CGAGATCTCAGGGAGTCCGGTGAGGTTCTTGAAGGAACAAGGGTACCTA-CG-GGAGTTT 1218
Query 1122 C-CATGCACCGGGGAACAAACTCCAG-TTCGACTTGGGGAAGCTAAAG--TTTGGAAT-C 1176
| ||| ||||||||||||||| | ||||| ||||||||||| || ||| |||| |
Sbjct 1219 CTAATG--TCGGGGAACAAACTCC-GATTCGATTTGGGGAAGCT-GAGTTTTTCGAATAC 1274
Query 1177 TTCTTGAAAACCCTGGATTTGTCAAGGAACTTGGTATTTGGGAAGGTACCGGTGACGG-T 1235
|| | | || || ||| ||||||||||||| || || ||||| || |||| || || |
Sbjct 1275 -GCTCG-AGACGCTTGATCTGTCAAGGAACTTAGTGTTCGGGAAAGTGCCGGCGA-GGTT 1331
Query 1236 GACCAGACTGCAGACACTAAACTTGAGTCAAAACCATCTTTGCGG-AAAGCTTCCATCGA 1294
| ||||| || ||||||||||||||||||||||||||||||| || ||| ||||| |||
Sbjct 1332 GGCCAGATTGAAGACACTAAACTTGAGTCAAAACCATCTTTGTGGGAAA-CTTCCGGCGA 1390
Query 1295 CAAAGTTCCCGGCTAGTGCT-TTTGTCGATAACAAGTGTCTTTGCGGCTTTCCACTTTCT 1353
| ||||| || | |||| | |||| || ||| | ||||| ||||||| ||||||| |
Sbjct 1391 CCAAGTTTCCAGAAAGTG-TGTTTGCCGGGAACGACTGTCTCTGCGGCTCTCCACTTGGT 1449
Query 1354 CCTTGTAAAGCTTA 1367
| |||||||| |||
Sbjct 1450 CATTGTAAAGGTTA 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5