BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33750.1
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922469 jgi|Araly1|922469|scaffold_103750.1 1358 0.0
Ahg922468 jgi|Araly1|922468|scaffold_103749.1 93.5 5e-18
> Ahg922469 jgi|Araly1|922469|scaffold_103750.1
Length=1774
Score = 1358 bits (735), Expect = 0.0
Identities = 1020/1152 (89%), Gaps = 41/1152 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGCAGCAAGAATGGGTTTTCG-AGCTAAAACTCTCCCTCACCTTGGCAACGGTAC 59
||||||||||||| |||||||||| | |||||||||||||||||||||||||| || ||
Sbjct 21 ATGGAAGCAGCAACAATGGGTTTT-GTTGCTAAAACTCTCCCTCACCTTGGCAATGGCAC 79
Query 60 TCGACTTCCTCTTAAGACCAAACTCTCGCTCTTTCCTATGCATTTGCTTCAAAACCACAC 119
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 80 TCGTCTTCCTCTTAAGACCAAACTCTCGCTCTTTCCTATGCATTTGCTTCACAACCACAT 139
Query 120 TACTCTTTCCCGGAGATCAACAAAACTCAACTTATGTGTCAAGGCTTGTAGTAAGACTAG 179
||||||||| |||||||| ||||||| ||||||||||| ||||| |||| ||| |||
Sbjct 140 TACTCTTTCTCGGAGATCGACAAAACAAAACTTATGTGTTAAGGCAACTAGTGAGAGTAG 199
Query 180 T-G-G-TGTTGAGAGTAGTCGTCCCTTGCCTCACAG-TGCTCCCGA-TCTTTGGGGAGAT 234
| | | |||||||||||| ||||| |||||||| | ||||||| | |||||||||||||
Sbjct 200 TGGTGATGTTGAGAGTAGCCGTCCTTTGCCTCA-TGTTGCTCCC-ACTCTTTGGGGAGAT 257
Query 235 CACATCCTCTCTGTCCCCACCGAAAACTCGGAATTTGATACACTAGAGACAGAGATTGAA 294
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 258 CACATCCTCTCTGTCCCCACCGAAAACTCGGAATTTGATTCACTAGAGACAGAGATTGAA 317
Query 295 TCAAT-A-AA-GCCGAAAGTGA-GAAACATGCTAATGTCGTCTCACAAGACTGACAAAGA 350
||||| | || ||||||||||| ||| |||||||||||| |||||||| ||||| |||||
Sbjct 318 TCAATTATAAAGCCGAAAGTGAAGAA-CATGCTAATGTCCTCTCACAACACTGATAAAGA 376
Query 351 GAGAATATGT-CTCATACACTTGCTTATTTGCCTTGGTACTTTCCATTACTTTGAGAAGG 409
|||||||| | ||||| ||||||||||| || |||||||||| |||||||||||||||||
Sbjct 377 GAGAATAT-TACTCATCCACTTGCTTATGTGTCTTGGTACTTCCCATTACTTTGAGAAGG 435
Query 410 AAATTGAAGAGATTCTAGAACAGGCTTTTCG-GAAGTTGGACAT-GCTATTTACAGACGA 467
|||| |||||||||||||| ||||||||| | |||||||||| | | || ||| ||||||
Sbjct 436 AAATCGAAGAGATTCTAGACCAGGCTTTT-GAGAAGTTGGAC-TCGTTAATTAGAGACGA 493
Query 468 AGATGATTTGGAGACAACTGCCATCATGTTTGAGGTTTTCAGATTATATGGACA-CAAGA 526
|||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 494 AGATGATTTGGAAACAATTGCCATCATGTTTGAGGTTTTCAGATTATATGGACATCA-GA 552
Query 527 TTTCTTGTGATGTGTTCGATAGATTCAAAGGTGTTGATGCCAAGTTCAAGGAACATCTAG 586
||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||
Sbjct 553 TTTCTTGTGATGTGTTCGATAGATTCAAAGGTGTTGATGGGAAGTTCAA--A-CACCTAG 609
Query 587 TCAGTGATGTTCGGGGAATGCTACAGCTGTACGAAGCAGCGCATCTCGCAACACCCTTCG 646
||||||||||| ||||||| ||||||||||| |||| |||||||||| | ||||||| ||
Sbjct 610 TCAGTGATGTTAGGGGAATACTACAGCTGTATGAAGGAGCGCATCTCACGACACCCTCCG 669
Query 647 AA-ACTATATTGGACGAAGCCTTGAGTTTCACAAGGTATCACTTGGAATCTTTGGCCGGC 705
|| | | || ||||||||||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 670 AAGA-TGTAATGGACGAAGCCCTGAGTTTTACAAGGTATCACTTGGAATCTCTGGCCGGA 728
Query 706 CAACAAGCTACAGCTCCTCATATCTCA-AGACATATACTTAACGCATTGTATAAACCTCG 764
||| |||| || ||||||||||| || | ||||||||| ||||||||||||||||||||
Sbjct 729 CAAGAAGCGACGGCTCCTCATATGGCACA-ACATATACTAAACGCATTGTATAAACCTCG 787
Query 765 GTTTCTT-AAGATGGAAATA-ATAGCTGCCCGGGAATATATT-CATTTCTATCAAAAAGA 821
|||| || ||| | ||||| | ||||||| |||||||| || | ||||||| |||||||
Sbjct 788 GTTT-TTCAAGTTACAAATAGA-AGCTGCCAGGGAATATCTTTC-TTTCTATGAAAAAGA 844
Query 822 -AGGTCATGATGAGACATTGCTCAAGTTTGCGAAGCTCAACTTCAACTTTTGCCAGCTAC 880
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 845 GAG-TCATGATGAGACGTTGCTCAAGTTTGCGAAGCTCAACTTCAACTTTTGCCAGCTCC 903
Query 881 ATTACGTTAGAGAGCTAAAAACTCTCACCAAATGGTGGAAAGACATTGATCTTCCATATA 940
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||
Sbjct 904 ATTACGTTAGAGAGCTAAAAACTCTCACTAAATGGTGGAAGGACATTGGTCTTGTATATA 963
Query 941 AGCTACCTTACATCAGAGACAGGCTTCTAGAGACCTTTATCGGTGTCATGGCGGTGTATC 1000
||||||||| ||| |||||||||||| | ||||||||| ||||||||| ||| ||| |
Sbjct 964 AGCTACCTTTCATTAGAGACAGGCTTTTGGAGACCTTTGCCGGTGTCATAGCGTTGTTTT 1023
Query 1001 TCGAGCCACACTATTCACTTGGG-AGAATTATAGCCACTAAAGTTTCCCAAGTGATAGTA 1059
||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||| | | ||
Sbjct 1024 TCGAGCCACACTATTCA-TTGGGGAGAATTATAACCACTAAAGCTTCCCAAGTTACAATA 1082
Query 1060 GTTATGGATGACACCTGTGATGCATATGGAACTTTCTCTGAAGTTAGAAGTCTT-ATTGA 1118
||||||||||| | ||||||||||||||||||| |||||||||||||||| || || ||
Sbjct 1083 GTTATGGATGATGCATGTGATGCATATGGAACTTGCTCTGAAGTTAGAAGT-TTCATCGA 1141
Query 1119 TTCTTTGGAAAG 1130
||||||| ||||
Sbjct 1142 TTCTTTGCAAAG 1153
Score = 272 bits (147), Expect = 6e-72
Identities = 257/309 (83%), Gaps = 12/309 (4%)
Strand=Plus/Plus
Query 1166 GTTTAAGAATCGTCATCCAAAGTATAG-TTGAAACAATGGAAGATATTGAAAGAGAAATG 1224
|||| |||||| |||||| |||||| | | ||||| ||||||||||||||||||||||||
Sbjct 1153 GTTTCAGAATCATCATCCGAAGTAT-GATGGAAACTATGGAAGATATTGAAAGAGAAATG 1211
Query 1225 AAGCCGCGAGGAAGATCCTCGAGTGTGCAAGACACCG-TAGAAGAGATTAAGATC-ATGG 1282
|||||||| ||||||||||| ||||||||| || | |||||||| |||||||| |||
Sbjct 1212 AAGCCGCGCGGAAGATCCTCTAGTGTGCAATACTT-GATAGAAGAGCTTAAGATCTATGC 1270
Query 1283 GGAGAGCGTACGCT-GAAATATCAAAATGGGCACGAGCAGGTCACGTTCCAACCTTTGAT 1341
||| | |||||| | || ||||||||||| | ||| ||||||| |||||||||||||||
Sbjct 1271 GGA-ATCGTACG-TAGAGTTATCAAAATGGTCCCGATCAGGTCATGTTCCAACCTTTGAT 1328
Query 1342 GACTATATTGAGCTTGGGCTTGACTCGTCAGGGATTAGATGCTTTGCAATGT-ACAGCTT 1400
| || |||||| ||||| ||| |||||||||||| |||| ||| | ||||| | |||||
Sbjct 1329 AAATACATTGAGGTTGGGATTGTCTCGTCAGGGATGAGATTCTTGGGAATGTTA-AGCTT 1387
Query 1401 TATATCGATGGAAGATTGTGAGGAGAATCAAACGAAC-GCGTGGTTCAAATCCAAACCCA 1459
|||| || |||||||||| || || || ||||||| | | ||||||| |||||||||| |
Sbjct 1388 TATAACGCTGGAAGATTGCGATGAAAACCAAACGA-CTGAGTGGTTCGAATCCAAACCTA 1446
Query 1460 AAATGTTAC 1468
| || ||||
Sbjct 1447 ATATCTTAC 1455
> Ahg922468 jgi|Araly1|922468|scaffold_103749.1
Length=482
Score = 93.5 bits (50), Expect = 5e-18
Identities = 77/90 (86%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 1166 GTTTAAGAATCGTCATCCAAAGTATAGTTGAAACAATGGAAGATATTGAAAGAGAAATGA 1225
|||| |||||| ||| || ||||||| | ||||| ||||||||||||||||||||||||
Sbjct 194 GTTTGAGAATCATCAGCCGAAGTATAATGGAAACTGTGGAAGATATTGAAAGAGAAATGA 253
Query 1226 AGCCGCGAGGAAGATCCTCG-AGTGTGCAA 1254
|||||| | ||| ||||| | |||||||||
Sbjct 254 AGCCGCAAAGAATATCCT-GTAGTGTGCAA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72904728930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5