BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33780.1
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473532 jgi|Araly1|473532|fgenesh2_kg.1__3486__AT1G33780.1 1836 0.0
> Ahg473532 jgi|Araly1|473532|fgenesh2_kg.1__3486__AT1G33780.1
Length=1301
Score = 1836 bits (994), Expect = 0.0
Identities = 1197/1290 (93%), Gaps = 33/1290 (3%)
Strand=Plus/Plus
Query 70 ATTCTTCCACTCATCGCTTCTCTT-TACCAAATCAAACTC---AACACTTCACTCAACTC 125
||||||| |||||||||||| || || | |||||||||| |||||||||||| |||
Sbjct 30 ATTCTTCTTCTCATCGCTTCT-TTATA-CGAATCAAACTCAAAAACACTTCACTC-TCTC 86
Query 126 TTATCGGACCTTCCAAACTATATCCTTCAATGGATCTATGGACTCTTCAATTAAAAGACG 185
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 87 TTATCGGATCTTCCAAAGTATATCCTTCAATGGATCTATGGACTCTTCAAGTAAAGGACG 146
Query 186 TCACGATCCGAAACCCTATCTTCTCATCATCGATCCCTGAGAAATCATCGTCGTTTTCTA 245
| |||||||||||||||||| | || |||||| | | | ||||||||| || |||||
Sbjct 147 TTACGATCCGAAACCCTATC-T-TC-TCATCG-T--CGGTGAAATCATCATCAATTTCTG 200
Query 246 GGAAACTTTGTGAATTGGAGTTTAGGTTTCTCAATCGTAAGG--T-TTCTGCTTCTCCGT 302
||||| | |||||||||||||||| |||||||| ||||||| | |||| |||||||||
Sbjct 201 GGAAAATCGGTGAATTGGAGTTTAGATTTCTCAAACGTAAGGTTTCTTCTCCTTCTCCGT 260
Query 303 ATCGTTCCTTGGTTGTTCGAGCTACCTCGAAGAAGAGTAACGACGATTC-T-T-CTTCTC 359
||||||| ||||||||||||||| | ||||||||||||||||||||||| | | |||||
Sbjct 261 ATCGTTCTTTGGTTGTTCGAGCTTCGTCGAAGAAGAGTAACGACGATTCTTCTGCTTCTG 320
Query 360 CTGGAGATGCTTCTCAGGAAAACAAACCTTCTAACGGCAACAAGTCCGGCGATTCCGCGG 419
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 321 CTGGAGATGCTTCTCAGGAAAACAAACCTTCTAATGGTAACAAATCCGGCGATTCCGCGG 380
Query 420 CTCCGAAATCGTTCGGTTTAAACACGGATTGGAGAGAGTTCAGAGCGAACTTGTTTATGA 479
||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 381 CTCCGAAGTCGTTCGGTTTAAACGCGGATTGGAGAGAGTTTAGAGCGAACTTGTTTATGA 440
Query 480 AAGAGCAGGAAGAAAAGGCGGAAGCTGAGGGTCATGAATCGGAACCTATAGGTTTGAAAT 539
|||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct 441 AAGAGCAGGAAGAAAAGGCGGAAGCTGAGGGTAATGAATCGGAACCGATAGGGTTGAAAT 500
Query 540 GGGCACATCCGATTCCGTTTCCTGAGACTGGTTGTGTTCTAGTTGCTACAGAGAAGCTAG 599
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GGGCGCATCCGATTCCGTTTCCTGAGACTGGTTGTGTTCTAGTTGCTACAGAGAAGCTAG 560
Query 600 ATGGTTATAGAACATTTGCGAGAACTGTTGTGCTTCTTCTTAGAGCAGGTACTAGACACC 659
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 561 ATGGTTATAGAACATTTGCGAGAACGGTTGTGCTTCTTCTTAGAGCAGGAACTAGACATC 620
Query 660 CACAAGAAGGGCCGTTTGGTGTTGTTATCAACCGTCCACTTCATAAAAACATCAAGCATA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CACAAGAAGGGCCGTTTGGTGTTGTTATCAACCGTCCACTTCATAAAAACATCAAGCATA 680
Query 720 TGAAATCAACGAAAACCGAGCTCGCTACTACGTTTTCTGAATGTTCTTTGTACTTTGGTG 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 681 TGAAATCAACGAAAACCGAGCTCGCTACCACGTTTTCTGAATGTTCTTTGTACTTTGGTG 740
Query 780 GTCCTCTTGAAGCAAGCATGTTTTTGTTGAAAA-CTGGTGATAAAACCAAGATACCTGGG 838
| |||||||||||||||||||| |||||||||| | || |||||||| |||||||| |||
Sbjct 741 GACCTCTTGAAGCAAGCATGTTCTTGTTGAAAAAC-GGCGATAAAACTAAGATACC-GGG 798
Query 839 TTT-GAAGAAGTCATGCCGGGGCTTAACTTTGGTACTCGAAATAGTTTGGATGAAGCTGC 897
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 799 TTTTGAAGAAGTCATGCCCGGGCTTAACTTTGGTACTCGAAACAGTTTGGATGAAGCTGC 858
Query 898 AGTGCTTGTAAAGAAGGGAGTTCTTAAGCCACAGGAGTTTAGATTCTTTGTTGGTTACGC 957
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AGTGCTTGTAAAGAAGGGAATTCTTAAGCCACAGGAGTTTAGATTCTTTGTTGGTTACGC 918
Query 958 CGGTTGGCAGCTAGATCAGCTCAGAGAAGAGATTGAATCAGATTACTGGCATGTTGCTGC 1017
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 919 CGGTTGGCAGCTGGATCAGCTCAGAGAAGAGATCAAATCAGATTACTGGCATGTTGCTGC 978
Query 1018 GTGCAGCTCGGATTTAATATGCGGAGCTTCTTCGGAAAACTTGTGGGAGGAGATTTTACA 1077
|||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 979 TTGCAGCTCAGATTTGATATGCGGAGCTTCATCGGAAAACTTGTGGGAAGAGATTTTACA 1038
Query 1078 GTTAATGGGCGGTCAATACTCCGAGCTTAGCCGAAAACCTAAGCTGGATATCT-GAAGTT 1136
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1039 GTTAATGGGCGGTCAATACTCCGAGCTTAGCCGGAAACCCAAGCTGGATATCTAGAAGTT 1098
Query 1137 TTCTAAGAGAACTTGAGGCTTTTTTATAACTTATATATATTTTCTCTATTAAGCCGATTT 1196
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1099 TTCTAAGAGAACTTGAGGCTTTTT-ATAACTTATATATATTTTCTCTATTAAGCCAATTT 1157
Query 1197 GTATAGCTTACTTTCGTTGGCTT-GTACGTGAGAATAATGCACTTCTATGCTATTTATAA 1255
||||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1158 GTATAGCTTACTT-CGCTGGCTTTGTATGTGAGAATAATGCACTTCTATGCTATTTATAA 1216
Query 1256 AGATTTGCTTTGTGAAAACACACTCCTATTATGTATTCTGCAGTTTATAACTAAACA-AC 1314
||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||
Sbjct 1217 AGATTTGCTTTGTGAAAAC----TCCTATTATGTATTCTGCAGTTAATAACTAAA-AGAC 1271
Query 1315 ATCTATCTAATAAATTGAAACAGTTGTTCT 1344
||||||||||||||||||||||||||||||
Sbjct 1272 ATCTATCTAATAAATTGAAACAGTTGTTCT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50360373357
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5