BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33790.2
Length=2536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913196 jgi|Araly1|913196|Al_scaffold_0001_3450 850 0.0
Ahg906278 jgi|Araly1|906278|Al_scaffold_0003_3406 198 1e-49
> Ahg913196 jgi|Araly1|913196|Al_scaffold_0001_3450
Length=1272
Score = 850 bits (460), Expect = 0.0
Identities = 583/644 (91%), Gaps = 2/644 (0%)
Strand=Plus/Plus
Query 1057 AAGCAAAAGGTGGAAACGGAGGCAATCAGTGGGATGATTTAGCTGACCATGATCATGTAA 1116
|||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 AAGCAAAAGGCGTAAAAGGAGGCAATCAGTGGGATGATTTAGCTGACCATGATCATGTAA 76
Query 1117 CAAAGATTTATGTACAAGGTGGTCAG-GAAGGTATACAATACGTCAAGTTTGATTATGTC 1175
||||||| |||||||||| ||||| | ||||||| || |||||||||||||||||||||
Sbjct 77 CAAAGATATATGTACAAGATGGTC-GCAAAGGTATTCAGTACGTCAAGTTTGATTATGTC 135
Query 1176 AAGAATGGTCAACCACAAAGTGGATCAGTCCATGGTCTCTTGGGTAGAGGATTCACGCAA 1235
||||||||||||||||||| ||||||| ||||||||||| |||||||| |||| | | ||
Sbjct 136 AAGAATGGTCAACCACAAACTGGATCACTCCATGGTCTCATGGGTAGACGATTGATGAAA 195
Query 1236 ACGTTTGAGATTGATCCAACCAATGAACATCTTGTATCCGTTGAGGGTTACTATGATGAA 1295
| |||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||
Sbjct 196 AAGTTTGAGATTGATCCAGCCAGTGAGTATCTTGTATCCGTTGAGGGTTGGTATGATGAC 255
Query 1296 TCTAAGGGTTTGGTTCAAGGGCTTAAATTCAAAACCAACAAGAAGACTTCTGACATGATA 1355
|||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 256 GCTAAGGGTATAATTCAAACACTTAAATTCAAAACCAACAAGAAGACTTCTGATATGATA 315
Query 1356 GGATACGATGAAAATGGTTTGAAGTTTTCACTTGAAGTTAACGGAAAAAAGATAATTGGC 1415
|||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 316 GGATACAATGCAACTGGTTTGAAGTTTTCACTTAAAGTTAACGGAAAAAAGATAATTGGC 375
Query 1416 TTCCATGGATATGCTCAGACTTATCTAAACTCTCTTGGAGCTTATTTCGTAACGGCTCCT 1475
||||||||||||||| | ||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 376 TTCCATGGATATGCTGATACTAATCTCAACTCTCTTGGAGCTTATTTCACAACGGCTCCT 435
Query 1476 CCTACTAAATTTGACTACCAAGGTGGTTCAGGAGCCCAACTTTGGGATGACGGTACTAAC 1535
|||||||||||||||| ||||||||||||||| |||| ||||||||||| ||| |||||
Sbjct 436 CCTACTAAATTTGACTGTCAAGGTGGTTCAGGATCCCAGCTTTGGGATGATGGTTCTAAC 495
Query 1536 TACAATGGTGTGAGAAAGATTTCCTTTGCGTTAGATGCCAATGAGATAAGGCAAATCAGG 1595
|||| ||||||||||||| |||||||||||||||||| || ||||||||| |||||| |
Sbjct 496 TACAGTGGTGTGAGAAAGGTTTCCTTTGCGTTAGATGACACCGAGATAAGGAAAATCAAG 555
Query 1596 ATTGATTATGACAAAGGTGGCTTAATTGAAAGACGAGAGTACGGGGGTAACGTAGGACGA 1655
||| |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 556 ATTAATTATGACAAAGGTGGCTTAGTGGAAAGACGTGAGTACGGGGGTAACGTAGGACGA 615
Query 1656 CAAGAGGAGTTTGTGGTCGACTATCCAAGTGAATATATCATATA 1699
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 616 CAAGAGGAGTTTGTGGTCGACTATCCAAGTGAATACATCATATA 659
Score = 710 bits (384), Expect = 0.0
Identities = 588/682 (86%), Gaps = 31/682 (5%)
Strand=Plus/Plus
Query 126 ATGGCCCAGAAGTTGGAAGCAAAAGGCGGGAAAGGAGGCAATCAGTGGGATGATTTA-CT 184
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1 ATGGCCCAGAAGTTGGAAGCAAAAGGCGTAAAAGGAGGCAATCAGTGGGATGATTTAGC- 59
Query 185 TGACCATGA-CAATATCGCAAAGAT-TCATGTACAAGGTGGTCATGAAGGGATTCAGTAC 242
||||||||| | || | ||||||| | ||||||||| ||||| |||| |||||||||
Sbjct 60 TGACCATGATC-ATGTAACAAAGATAT-ATGTACAAGATGGTCGCAAAGGTATTCAGTAC 117
Query 243 GTCAAGTTTGATTATGTTAAGTTTGATAATCTCAAGATTGGTCAACC-CAAACTTGGATC 301
|||||||||| | || | || |||||| ||||||||| ||||| ||||||
Sbjct 118 GTCAAGTTTG---A--TT-A---TG------TCAAGAATGGTCAACCACAAAC-TGGATC 161
Query 302 AATCCATGGTCTC-TCGCGTAAAGGATTCACGCAAACGTTTGAGATTGATCCCA-CCAGT 359
| ||||||||||| | | ||| | |||| | | ||| ||||||||||||| ||| |||||
Sbjct 162 ACTCCATGGTCTCAT-GGGTAGACGATTGATGAAAAAGTTTGAGATTGAT-CCAGCCAGT 219
Query 360 GAGTATATTGTATCCGTTGAAGGTTACTATGATGAATCTAAGGGTATTATTCAAGCACTT 419
|||||| ||||||||||||| |||| |||||||| |||||||||| |||||| |||||
Sbjct 220 GAGTATCTTGTATCCGTTGAGGGTTGGTATGATGACGCTAAGGGTATAATTCAAACACTT 279
Query 420 AAATTCAAAACCAACAAGAAGACTTCTGACATGATAGGATACGATGAAAATGGTTTGAAG 479
||||||||||||||||||||||||||||| |||||||||||| ||| || ||||||||||
Sbjct 280 AAATTCAAAACCAACAAGAAGACTTCTGATATGATAGGATACAATGCAACTGGTTTGAAG 339
Query 480 TTCTCACTTGAAGTTAAGGGAAAAGCA-ATAATTGGCTTTCACGGATTTGCTGACACTAA 538
|| |||||| ||||||| |||||| | ||||||||||| || |||| |||||| |||||
Sbjct 340 TTTTCACTTAAAGTTAACGGAAAAA-AGATAATTGGCTTCCATGGATATGCTGATACTAA 398
Query 539 TCTAAATTCTCTTGGAGCTTATTTCGCACCGGCTCCTCCAACTAAATTTGACTATCAAGG 598
||| || |||||||||||||||||| || |||||||||| ||||||||||||| ||||||
Sbjct 399 TCTCAACTCTCTTGGAGCTTATTTCACAACGGCTCCTCCTACTAAATTTGACTGTCAAGG 458
Query 599 TGGTTCAGGAGCCCAACTTTGGGATGATGGTAGTAACTACAATGGTGTGAGAAAGGTTTC 658
|||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 459 TGGTTCAGGATCCCAGCTTTGGGATGATGGTTCTAACTACAGTGGTGTGAGAAAGGTTTC 518
Query 659 TTTTTCGTTAGATGACACCGAGATAAGGCAAATCAGGATTGAAT-ATGACAAAAGTGGCT 717
||| ||||||||||||||||||||||| |||||| |||| ||| |||||||| ||||||
Sbjct 519 CTTTGCGTTAGATGACACCGAGATAAGGAAAATCAAGATT-AATTATGACAAAGGTGGCT 577
Query 718 TAGTAGAAAAACGTGAGTACGGAAGTAACGTAGGACGACAAGAGGAGTTTGTGCTGGACT 777
|||| |||| |||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 578 TAGTGGAAAGACGTGAGTACGGGGGTAACGTAGGACGACAAGAGGAGTTTGTGGTCGACT 637
Query 778 ATCCGACTGAATACATCATATA 799
|||| | |||||||||||||||
Sbjct 638 ATCCAAGTGAATACATCATATA 659
Score = 617 bits (334), Expect = 9e-176
Identities = 413/448 (92%), Gaps = 17/448 (4%)
Strand=Plus/Plus
Query 1913 TCTTCCTCCTTCCGCTGAAACACTACAAGCAAAAGGAGGTGAAGGAGGAGATCCATGGAG 1972
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 831 TCTTCCTCCTTCCGCTGAAACACTACAAGCAAAAGGTGGTGAAGGAGGAGATCCATGGAA 890
Query 1973 CGATGGTGTTTTCAACGGTGTGAGGAATATATATGTAGGACAAGGTGAAAATGGTGTCAG 2032
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 891 CGATGGTGTTTTCAACGGTGTGAGGAAAATATATGTAGGACAAGGTGGAAATGGTGTCAG 950
Query 2033 TGCCGTCAAGTTTGTGTATGATAAAGACTCTCAGGTGGCTGAAGGGAATGATCATGGGAA 2092
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 951 TGCCGTCAAGTTTGTGTATGATAAGGACTCTCACGTGGCTGAAGGGAATGATCATGGGAA 1010
Query 2093 ACCAA-CACTTCTTGGATACGAGGAGTTCAAGCTTGAATATCCGAGTGAATACATCACCA 2151
|||| |||||||||||||||||||| || | | | || ||||| |||||||||
Sbjct 1011 -CCAAACACTTCTTGGATACGAGGAG---AA--T--A-T--CCTAGTGAGTACATCACCG 1059
Query 2152 CGGTGGAAGGTTGTTTTGACAAAATATTTGGAAGTGGAGGCGGCGTTATAACCATGCTTA 2211
||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1060 CGGTGGAAG-TT-T---GACAAAATATTTGGAAGTGGAGGCGGAGTTATAACCATGCTTA 1114
Query 2212 AGTTCAAGACCAACAAACGAACCTCTCCGCCGTTTGGACTCGAAACAACATCAAACTTTG 2271
||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 1115 AGTTCAAGACCAACAAACGAATCTCTCCACCGTTTGGACTCGAAACAACATCAAGCTTTG 1174
Query 2272 TTCTCGGGAAGGAAGGTTACAAAATTGTAGGGTTCCACGGAACATCTAGTCATGAGCTTC 2331
|||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1175 TTCTTGGGAAGGAAGGTTATAAAATTGTAGGGTTCCACGGAAAATCTAGTCATGAGCTTC 1234
Query 2332 ATCAGCTCGGGGTATATGTCATGCCCAT 2359
| |||||||||||||||||| |||||||
Sbjct 1235 ACCAGCTCGGGGTATATGTCGTGCCCAT 1262
Score = 174 bits (94), Expect = 2e-42
Identities = 127/143 (89%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 1777 GGAGAACCTCTCCGATATTTGGAAAGGTTGCTGCTCGTAAATTCGTGTTTGAAAGCAATG 1836
||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
Sbjct 665 GGATAACCTCTCCGATATTTGGAAAGGTTGCTACTCGCAAATTCGTTTTTGAAAGCAACG 724
Query 1837 GTAGTGCTCTTATCGGGTTTCATGGGCGGGCTGCTGCTGCAGTAGATGCCATCGGAGCTT 1896
||||||| ||||||||||| ||||| || || |||| ||| ||||||||||||||||||
Sbjct 725 GTAGTGCCCTTATCGGGTTCCATGGACGAGCAGCTGTTGCTCTAGATGCCATCGGAGCTT 784
Query 1897 ATT-TCTCCCGGTTTATTCTTCC 1918
|| |||||| ||||||||||||
Sbjct 785 -TTGTCTCCCCGTTTATTCTTCC 806
> Ahg906278 jgi|Araly1|906278|Al_scaffold_0003_3406
Length=1761
Score = 198 bits (107), Expect = 1e-49
Identities = 341/450 (76%), Gaps = 31/450 (7%)
Strand=Plus/Plus
Query 1070 AAACGGAGGCAATCAGTGGGATGATTTAGCTGACCATGATCATGTAACAAAGATTTATGT 1129
||| |||||||| ||||| | ||| | | || ||||| ||| ||||| || ||||
Sbjct 468 AAAAGGAGGCAAGGAGTGGAACGATGGATCCGATCATGAAGGTGTTACAAAAATCCATGT 527
Query 1130 ACAAGGTGGTCAGGAAGGTATACAATACGTCAAGTTTGATTATGTCAAGAATGGTCAACC 1189
|| |||||||| |||||||||||||||||||||||||||||| | | | |||| ||| |
Sbjct 528 ACGAGGTGGTCCTGAAGGTATACAATACGTCAAGTTTGATTATATTACGGATGG-CAAAC 586
Query 1190 ACA-A-AGTGGATCA-G-TCCATGGT-CTCTTGGGTAGAGGATTCACGCAAACGTTTGAG 1244
| | | | ||| || | || ||||| | | |||||||| ||||||||| ||||||||
Sbjct 587 ATATATA-TGGG-CAAGCTC-ATGGTGC-CACAGGTAGAGGTTTCACGCAACCGTTTGAG 642
Query 1245 ATTGATC----CAACCAATGAACATCTTG-TATCCGTTGAGGGTTACTATGATGA--ATC 1297
|| || | |||| || ||| || ||| |||| ||||||||||||||||| | | |
Sbjct 643 ATCGACCATTTCAAC-AAGGAATAT-TTGGTATCTGTTGAGGGTTACTATGACAACGA-C 699
Query 1298 TAA---GGGTTTGGTTCAAGGGCTTAAATTCAAAACCAACAAGAAGACTTCTGACAT-GA 1353
|| ||| | ||||||||||| |||||| ||| ||||| |||||||| || || ||
Sbjct 700 AAACATGGGGTCA-TTCAAGGGCTTCAATTCAGAACTAACAACAAGACTTCAGA-ATTGA 757
Query 1354 TAGGATACGATGAAAATGGTTTGAAGTTTTCACTTGAAGTTAACGGAAAAAAGATAATTG 1413
| |||||||| || |||| ||||||| |||| | || || ||||| ||||||||||
Sbjct 758 TGGGATACGAC-AA--TGGTAAGAAGTTTACACTAGCAGCTAGTGGAAAGAAGATAATTG 814
Query 1414 GCTTCCATGGATATGCTCAGACTTATCTAAACTCTCTTGGAGCTTATTTCGTAACGGCTC 1473
| || ||||||| |||| ||| |||||||| |||| ||||| |||||| ||| ||
Sbjct 815 GGTTTCATGGATTTGCTGAGAAGAATCTAAACGCTCTGGGAGCATATTTCACAACTTTTC 874
Query 1474 CTCCTACTAAATTTGA-CTACCAAGGTGGT 1502
|| ||||||||| || || | ||||||||
Sbjct 875 CTTTTACTAAATTAGAACT-CAAAGGTGGT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95606514950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5