BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33790.2 Length=2536 Score E Sequences producing significant alignments: (Bits) Value Ahg913196 jgi|Araly1|913196|Al_scaffold_0001_3450 850 0.0 Ahg906278 jgi|Araly1|906278|Al_scaffold_0003_3406 198 1e-49 > Ahg913196 jgi|Araly1|913196|Al_scaffold_0001_3450 Length=1272 Score = 850 bits (460), Expect = 0.0 Identities = 583/644 (91%), Gaps = 2/644 (0%) Strand=Plus/Plus Query 1057 AAGCAAAAGGTGGAAACGGAGGCAATCAGTGGGATGATTTAGCTGACCATGATCATGTAA 1116 |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 17 AAGCAAAAGGCGTAAAAGGAGGCAATCAGTGGGATGATTTAGCTGACCATGATCATGTAA 76 Query 1117 CAAAGATTTATGTACAAGGTGGTCAG-GAAGGTATACAATACGTCAAGTTTGATTATGTC 1175 ||||||| |||||||||| ||||| | ||||||| || ||||||||||||||||||||| Sbjct 77 CAAAGATATATGTACAAGATGGTC-GCAAAGGTATTCAGTACGTCAAGTTTGATTATGTC 135 Query 1176 AAGAATGGTCAACCACAAAGTGGATCAGTCCATGGTCTCTTGGGTAGAGGATTCACGCAA 1235 ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||| | | || Sbjct 136 AAGAATGGTCAACCACAAACTGGATCACTCCATGGTCTCATGGGTAGACGATTGATGAAA 195 Query 1236 ACGTTTGAGATTGATCCAACCAATGAACATCTTGTATCCGTTGAGGGTTACTATGATGAA 1295 | |||||||||||||||| ||| ||| ||||||||||||||||||||| |||||||| Sbjct 196 AAGTTTGAGATTGATCCAGCCAGTGAGTATCTTGTATCCGTTGAGGGTTGGTATGATGAC 255 Query 1296 TCTAAGGGTTTGGTTCAAGGGCTTAAATTCAAAACCAACAAGAAGACTTCTGACATGATA 1355 |||||||| | ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 256 GCTAAGGGTATAATTCAAACACTTAAATTCAAAACCAACAAGAAGACTTCTGATATGATA 315 Query 1356 GGATACGATGAAAATGGTTTGAAGTTTTCACTTGAAGTTAACGGAAAAAAGATAATTGGC 1415 |||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 316 GGATACAATGCAACTGGTTTGAAGTTTTCACTTAAAGTTAACGGAAAAAAGATAATTGGC 375 Query 1416 TTCCATGGATATGCTCAGACTTATCTAAACTCTCTTGGAGCTTATTTCGTAACGGCTCCT 1475 ||||||||||||||| | ||| |||| ||||||||||||||||||||| |||||||||| Sbjct 376 TTCCATGGATATGCTGATACTAATCTCAACTCTCTTGGAGCTTATTTCACAACGGCTCCT 435 Query 1476 CCTACTAAATTTGACTACCAAGGTGGTTCAGGAGCCCAACTTTGGGATGACGGTACTAAC 1535 |||||||||||||||| ||||||||||||||| |||| ||||||||||| ||| ||||| Sbjct 436 CCTACTAAATTTGACTGTCAAGGTGGTTCAGGATCCCAGCTTTGGGATGATGGTTCTAAC 495 Query 1536 TACAATGGTGTGAGAAAGATTTCCTTTGCGTTAGATGCCAATGAGATAAGGCAAATCAGG 1595 |||| ||||||||||||| |||||||||||||||||| || ||||||||| |||||| | Sbjct 496 TACAGTGGTGTGAGAAAGGTTTCCTTTGCGTTAGATGACACCGAGATAAGGAAAATCAAG 555 Query 1596 ATTGATTATGACAAAGGTGGCTTAATTGAAAGACGAGAGTACGGGGGTAACGTAGGACGA 1655 ||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct 556 ATTAATTATGACAAAGGTGGCTTAGTGGAAAGACGTGAGTACGGGGGTAACGTAGGACGA 615 Query 1656 CAAGAGGAGTTTGTGGTCGACTATCCAAGTGAATATATCATATA 1699 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 616 CAAGAGGAGTTTGTGGTCGACTATCCAAGTGAATACATCATATA 659 Score = 710 bits (384), Expect = 0.0 Identities = 588/682 (86%), Gaps = 31/682 (5%) Strand=Plus/Plus Query 126 ATGGCCCAGAAGTTGGAAGCAAAAGGCGGGAAAGGAGGCAATCAGTGGGATGATTTA-CT 184 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 1 ATGGCCCAGAAGTTGGAAGCAAAAGGCGTAAAAGGAGGCAATCAGTGGGATGATTTAGC- 59 Query 185 TGACCATGA-CAATATCGCAAAGAT-TCATGTACAAGGTGGTCATGAAGGGATTCAGTAC 242 ||||||||| | || | ||||||| | ||||||||| ||||| |||| ||||||||| Sbjct 60 TGACCATGATC-ATGTAACAAAGATAT-ATGTACAAGATGGTCGCAAAGGTATTCAGTAC 117 Query 243 GTCAAGTTTGATTATGTTAAGTTTGATAATCTCAAGATTGGTCAACC-CAAACTTGGATC 301 |||||||||| | || | || |||||| ||||||||| ||||| |||||| Sbjct 118 GTCAAGTTTG---A--TT-A---TG------TCAAGAATGGTCAACCACAAAC-TGGATC 161 Query 302 AATCCATGGTCTC-TCGCGTAAAGGATTCACGCAAACGTTTGAGATTGATCCCA-CCAGT 359 | ||||||||||| | | ||| | |||| | | ||| ||||||||||||| ||| ||||| Sbjct 162 ACTCCATGGTCTCAT-GGGTAGACGATTGATGAAAAAGTTTGAGATTGAT-CCAGCCAGT 219 Query 360 GAGTATATTGTATCCGTTGAAGGTTACTATGATGAATCTAAGGGTATTATTCAAGCACTT 419 |||||| ||||||||||||| |||| |||||||| |||||||||| |||||| ||||| Sbjct 220 GAGTATCTTGTATCCGTTGAGGGTTGGTATGATGACGCTAAGGGTATAATTCAAACACTT 279 Query 420 AAATTCAAAACCAACAAGAAGACTTCTGACATGATAGGATACGATGAAAATGGTTTGAAG 479 ||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||| Sbjct 280 AAATTCAAAACCAACAAGAAGACTTCTGATATGATAGGATACAATGCAACTGGTTTGAAG 339 Query 480 TTCTCACTTGAAGTTAAGGGAAAAGCA-ATAATTGGCTTTCACGGATTTGCTGACACTAA 538 || |||||| ||||||| |||||| | ||||||||||| || |||| |||||| ||||| Sbjct 340 TTTTCACTTAAAGTTAACGGAAAAA-AGATAATTGGCTTCCATGGATATGCTGATACTAA 398 Query 539 TCTAAATTCTCTTGGAGCTTATTTCGCACCGGCTCCTCCAACTAAATTTGACTATCAAGG 598 ||| || |||||||||||||||||| || |||||||||| ||||||||||||| |||||| Sbjct 399 TCTCAACTCTCTTGGAGCTTATTTCACAACGGCTCCTCCTACTAAATTTGACTGTCAAGG 458 Query 599 TGGTTCAGGAGCCCAACTTTGGGATGATGGTAGTAACTACAATGGTGTGAGAAAGGTTTC 658 |||||||||| |||| ||||||||||||||| |||||||| |||||||||||||||||| Sbjct 459 TGGTTCAGGATCCCAGCTTTGGGATGATGGTTCTAACTACAGTGGTGTGAGAAAGGTTTC 518 Query 659 TTTTTCGTTAGATGACACCGAGATAAGGCAAATCAGGATTGAAT-ATGACAAAAGTGGCT 717 ||| ||||||||||||||||||||||| |||||| |||| ||| |||||||| |||||| Sbjct 519 CTTTGCGTTAGATGACACCGAGATAAGGAAAATCAAGATT-AATTATGACAAAGGTGGCT 577 Query 718 TAGTAGAAAAACGTGAGTACGGAAGTAACGTAGGACGACAAGAGGAGTTTGTGCTGGACT 777 |||| |||| |||||||||||| ||||||||||||||||||||||||||||| | |||| Sbjct 578 TAGTGGAAAGACGTGAGTACGGGGGTAACGTAGGACGACAAGAGGAGTTTGTGGTCGACT 637 Query 778 ATCCGACTGAATACATCATATA 799 |||| | ||||||||||||||| Sbjct 638 ATCCAAGTGAATACATCATATA 659 Score = 617 bits (334), Expect = 9e-176 Identities = 413/448 (92%), Gaps = 17/448 (4%) Strand=Plus/Plus Query 1913 TCTTCCTCCTTCCGCTGAAACACTACAAGCAAAAGGAGGTGAAGGAGGAGATCCATGGAG 1972 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 831 TCTTCCTCCTTCCGCTGAAACACTACAAGCAAAAGGTGGTGAAGGAGGAGATCCATGGAA 890 Query 1973 CGATGGTGTTTTCAACGGTGTGAGGAATATATATGTAGGACAAGGTGAAAATGGTGTCAG 2032 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 891 CGATGGTGTTTTCAACGGTGTGAGGAAAATATATGTAGGACAAGGTGGAAATGGTGTCAG 950 Query 2033 TGCCGTCAAGTTTGTGTATGATAAAGACTCTCAGGTGGCTGAAGGGAATGATCATGGGAA 2092 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 951 TGCCGTCAAGTTTGTGTATGATAAGGACTCTCACGTGGCTGAAGGGAATGATCATGGGAA 1010 Query 2093 ACCAA-CACTTCTTGGATACGAGGAGTTCAAGCTTGAATATCCGAGTGAATACATCACCA 2151 |||| |||||||||||||||||||| || | | | || ||||| ||||||||| Sbjct 1011 -CCAAACACTTCTTGGATACGAGGAG---AA--T--A-T--CCTAGTGAGTACATCACCG 1059 Query 2152 CGGTGGAAGGTTGTTTTGACAAAATATTTGGAAGTGGAGGCGGCGTTATAACCATGCTTA 2211 ||||||||| || | |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1060 CGGTGGAAG-TT-T---GACAAAATATTTGGAAGTGGAGGCGGAGTTATAACCATGCTTA 1114 Query 2212 AGTTCAAGACCAACAAACGAACCTCTCCGCCGTTTGGACTCGAAACAACATCAAACTTTG 2271 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| Sbjct 1115 AGTTCAAGACCAACAAACGAATCTCTCCACCGTTTGGACTCGAAACAACATCAAGCTTTG 1174 Query 2272 TTCTCGGGAAGGAAGGTTACAAAATTGTAGGGTTCCACGGAACATCTAGTCATGAGCTTC 2331 |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 1175 TTCTTGGGAAGGAAGGTTATAAAATTGTAGGGTTCCACGGAAAATCTAGTCATGAGCTTC 1234 Query 2332 ATCAGCTCGGGGTATATGTCATGCCCAT 2359 | |||||||||||||||||| ||||||| Sbjct 1235 ACCAGCTCGGGGTATATGTCGTGCCCAT 1262 Score = 174 bits (94), Expect = 2e-42 Identities = 127/143 (89%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 1777 GGAGAACCTCTCCGATATTTGGAAAGGTTGCTGCTCGTAAATTCGTGTTTGAAAGCAATG 1836 ||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||||| | Sbjct 665 GGATAACCTCTCCGATATTTGGAAAGGTTGCTACTCGCAAATTCGTTTTTGAAAGCAACG 724 Query 1837 GTAGTGCTCTTATCGGGTTTCATGGGCGGGCTGCTGCTGCAGTAGATGCCATCGGAGCTT 1896 ||||||| ||||||||||| ||||| || || |||| ||| |||||||||||||||||| Sbjct 725 GTAGTGCCCTTATCGGGTTCCATGGACGAGCAGCTGTTGCTCTAGATGCCATCGGAGCTT 784 Query 1897 ATT-TCTCCCGGTTTATTCTTCC 1918 || |||||| |||||||||||| Sbjct 785 -TTGTCTCCCCGTTTATTCTTCC 806 > Ahg906278 jgi|Araly1|906278|Al_scaffold_0003_3406 Length=1761 Score = 198 bits (107), Expect = 1e-49 Identities = 341/450 (76%), Gaps = 31/450 (7%) Strand=Plus/Plus Query 1070 AAACGGAGGCAATCAGTGGGATGATTTAGCTGACCATGATCATGTAACAAAGATTTATGT 1129 ||| |||||||| ||||| | ||| | | || ||||| ||| ||||| || |||| Sbjct 468 AAAAGGAGGCAAGGAGTGGAACGATGGATCCGATCATGAAGGTGTTACAAAAATCCATGT 527 Query 1130 ACAAGGTGGTCAGGAAGGTATACAATACGTCAAGTTTGATTATGTCAAGAATGGTCAACC 1189 || |||||||| |||||||||||||||||||||||||||||| | | | |||| ||| | Sbjct 528 ACGAGGTGGTCCTGAAGGTATACAATACGTCAAGTTTGATTATATTACGGATGG-CAAAC 586 Query 1190 ACA-A-AGTGGATCA-G-TCCATGGT-CTCTTGGGTAGAGGATTCACGCAAACGTTTGAG 1244 | | | | ||| || | || ||||| | | |||||||| ||||||||| |||||||| Sbjct 587 ATATATA-TGGG-CAAGCTC-ATGGTGC-CACAGGTAGAGGTTTCACGCAACCGTTTGAG 642 Query 1245 ATTGATC----CAACCAATGAACATCTTG-TATCCGTTGAGGGTTACTATGATGA--ATC 1297 || || | |||| || ||| || ||| |||| ||||||||||||||||| | | | Sbjct 643 ATCGACCATTTCAAC-AAGGAATAT-TTGGTATCTGTTGAGGGTTACTATGACAACGA-C 699 Query 1298 TAA---GGGTTTGGTTCAAGGGCTTAAATTCAAAACCAACAAGAAGACTTCTGACAT-GA 1353 || ||| | ||||||||||| |||||| ||| ||||| |||||||| || || || Sbjct 700 AAACATGGGGTCA-TTCAAGGGCTTCAATTCAGAACTAACAACAAGACTTCAGA-ATTGA 757 Query 1354 TAGGATACGATGAAAATGGTTTGAAGTTTTCACTTGAAGTTAACGGAAAAAAGATAATTG 1413 | |||||||| || |||| ||||||| |||| | || || ||||| |||||||||| Sbjct 758 TGGGATACGAC-AA--TGGTAAGAAGTTTACACTAGCAGCTAGTGGAAAGAAGATAATTG 814 Query 1414 GCTTCCATGGATATGCTCAGACTTATCTAAACTCTCTTGGAGCTTATTTCGTAACGGCTC 1473 | || ||||||| |||| ||| |||||||| |||| ||||| |||||| ||| || Sbjct 815 GGTTTCATGGATTTGCTGAGAAGAATCTAAACGCTCTGGGAGCATATTTCACAACTTTTC 874 Query 1474 CTCCTACTAAATTTGA-CTACCAAGGTGGT 1502 || ||||||||| || || | |||||||| Sbjct 875 CTTTTACTAAATTAGAACT-CAAAGGTGGT 903 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95606514950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5