BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33800.1
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913197 jgi|Araly1|913197|Al_scaffold_0001_3451 1434 0.0
> Ahg913197 jgi|Araly1|913197|Al_scaffold_0001_3451
Length=897
Score = 1434 bits (776), Expect = 0.0
Identities = 856/895 (96%), Gaps = 3/895 (0%)
Strand=Plus/Plus
Query 62 ATGAGGACCAAATCTCCATCTTCTCTTAATCTCAAGGTCATATTCATAGGTTCCTCAATC 121
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAACCAAATCTCAATCTTCCCTTAATCTCAAGGTCATATTCATAGGTTCCTCAATC 60
Query 122 TTGATCTTGATCATCATCTACTTAGCAAGATCAAACATCTCTTCTTCCTCTTCAAAGCCA 181
||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 61 TTGATCTTGCTCATCATTTACTTAGCAAGATCAAACATCTCTTCCTCCTCCTCAAAGCCA 120
Query 182 ATCTCCAAAACAAATCTCTCCCAAGAAGAAGAAGAAACTCAGCATAAACAAGAAGGATGT 241
||||||||||| ||||||||||||||||||||||||||||| || || | ||||||||||
Sbjct 121 ATCTCCAAAACTAATCTCTCCCAAGAAGAAGAAGAAACTCAACACAAGCCAGAAGGATGT 180
Query 242 CCAAC-A--ACACAACAATGCACAAAGATGCCACTTTCTTTATCCGATGCATTGGTTCAT 298
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAACGACGACACAACAATGCACAAAGATGCCACTTTCTTTATCCGATGCATTGGTTCAT 240
Query 299 TACGTCACTAGTAACGTCACTCCACAACAAACATTTGATGAAGTCTCTGTCTCAAAGAGA 358
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGTTACCAGTAACGTCACTCCACAACAAACATTTGATGAAGTCTCTGTCTCAAAGAGA 300
Query 359 GTCTTGGACAAGAAGTCTCCTTGTAACTTCCTTGTCTTTGGCTTAGGTCACGACAGTTTA 418
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 301 GTCTTGGACAAGAAGTCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGTCACGACAGCTTA 360
Query 419 ATGTGGGCATCTCTTAACCATGGTGGTCGTACCTTGTTTATTGAAGAAGACCAAGCTTGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 361 ATGTGGGCATCTCTTAACCATGGTGGTCGTACCTTGTTTATTGAAGAAGACGAGGCATGG 420
Query 479 ATTGCGATAGTAACTAAGAAGTTCCCAAACTTAGAATCTTACCACGTAGTTTACGACACA 538
||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 421 ATTTCGATAGTAACTAAGAAGTTCCCAAACCTGGAATCTTACCACGTAGTTTACGACACA 480
Query 539 AAAGTCAAAGATTCAGACAAGCTGATGGAACTAGGAAGATCAGAAGAGTGTAGATCTGTG 598
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 481 AAAGTCAAAGATTCAGACAAACTAATGGAACTAGGAAGATCTGAAGAGTGTAGATCTGTG 540
Query 599 TCTGATCCGAGAAACTCCAAATGTGATCTTGCGTTGAAAGATTTCCCGGCGGACTTTTAC 658
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTGATCCAAGAAACTCGAAATGTGATCTTGCGTTGAAAGATTTCCCGGCGGACTTTTAC 600
Query 659 GAGACGAAATGGGATCTGATCATGGTTGATGCACCAACTGGTTACCATGAAGAAGCTCCG 718
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 601 GAGACGAAATGGGATCTGATTATGGTTGATGCTCCAACTGGTTATCATGAAGAAGCTCCG 660
Query 719 GGGAGGATGAGTGCTATTTACACGGCGGGGCTTTTGGCTCGTAACCGTGAAGATGGTGAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGGAGGATGAGTGCTATTTACACGGCGGGGCTTTTGGCTCGTAACCGTGAAGATGGTGAA 720
Query 779 ACTGACGTTTTTGTTCACGACGTTAACCGTCCGGTGGAAGATGAGTTCTCGGCGACTTTC 838
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACTGATGTTTTTGTTCATGACGTTAACCGTCCGGTGGAAGATGAGTTCTCGGCGACTTTC 780
Query 839 TTGTGTAAAGGTTATATGAGGGAGCAAAATGGGAGACTTAGACATTTTACTATTCCTAGT 898
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 TTGTGTAAAGGTTATATGAGGGAGCAAAATGGGAGGCTTAGACATTTTACTATTCCTAGT 840
Query 899 CATCGGGCTCGTGCTGGACGACCTTTTTGTCCGGTGGAAGTTGATCGCCGCCGTT 953
||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 841 CATCGGGCTCGAGCTGGACGACCCTTTTGTCCGGTGGAGGTTGATCGCCGCCGTT 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45404394147
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5