BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33810.1 Length=660 Score E Sequences producing significant alignments: (Bits) Value Ahg336448 jgi|Araly1|336448|fgenesh1_pg.C_scaffold_1003013 667 0.0 Ahg922485 jgi|Araly1|922485|scaffold_103766.1 137 8e-32 > Ahg336448 jgi|Araly1|336448|fgenesh1_pg.C_scaffold_1003013 Length=420 Score = 667 bits (361), Expect = 0.0 Identities = 401/420 (95%), Gaps = 3/420 (1%) Strand=Plus/Plus Query 52 ATGGCGAAGAAGAAGGAACTGTTATCAAAAGCACCGTGGAGAGGCGACGACGAAGATGAT 111 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATGGCGAAGAAGAAGGAACTGTTATCAAAAGCACCGTGGAGAGGCGACGACGATGATGAC 60 Query 112 TCCGATAAGTTTAGCAACGCAAAGCTTAAAGTCACAAAGGATTCTGATGGTATGTCGAAG 171 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTGATAAGTTTAGCAACGCAAAGCTTAAAGTCACAAAGGATTCTGATGGTATGTCGAAG 120 Query 172 ATGCACGTCCCTAGCCGCGGAACCAAAAAAGGAAGTCTCGCTGATGATGATGATGAT--T 229 |||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||| | Sbjct 121 ATGCACGTTCCTAGTCGTGGAACCAAAAAGGGAAGTCTCGCTGATGATGATGATGATGAT 180 Query 230 -CACTTGAGATTGATCCTCAGCTTCGTTACAGCTTCAATCGCAACTATCAGTTCCTGCAA 288 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 TCACTTGAGATTGATCCTCAGCTTCGTTACAGCTTCAATCGCAACTACCAGTTCCTGCAA 240 Query 289 AGTGTATTCACTATAGACACTTTGGTGAAGCCTCTTCCTCCTTCAATGGCATTCAATGTC 348 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 241 AGTGTATTCACTATAGACACTTTGGTGAAGCCTCTTCCTCCTGCAATGGCATTCAACGTC 300 Query 349 TCTCGCAACTTGAGCTTCTTCACCCGCATTTTCACTCAATTCTTTGATCCTGAAGGCATT 408 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 301 TCTCGCAACTTGAGTTTCTTCACCCGCATTTTCACTCAGTTCTTTGATCCTGAAGGCATT 360 Query 409 GCAAATGCACAGAAGTCTCTAGGGTTGGGGCAGGAAGAGAAAGCTCGCCGTGTTCGTTGA 468 |||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct 361 GCAAATGCACAGAAGTCTCTGGGGTTGGGGCAGGAAGATAAAGCGCGTCGTGTTCGTTGA 420 > Ahg922485 jgi|Araly1|922485|scaffold_103766.1 Length=231 Score = 137 bits (74), Expect = 8e-32 Identities = 78/80 (98%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 490 TGTGAATGGACCCAGCACTGTTAGATTGATTAAAATATGTCCTCAAAGAGATGTTTTGTA 549 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 152 TGTGAATGGACCCAGCATTGTTAGATTGATTAAAATATGTCCTCAAAGAGATGTTTTGTA 211 Query 550 TGAATTTTCCTAAGTACAAT 569 ||||||||| |||||||||| Sbjct 212 TGAATTTTCGTAAGTACAAT 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24208052295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5