BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G33810.1

Length=660
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg336448 jgi|Araly1|336448|fgenesh1_pg.C_scaffold_1003013           667    0.0  
  Ahg922485 jgi|Araly1|922485|scaffold_103766.1                        137    8e-32


> Ahg336448 jgi|Araly1|336448|fgenesh1_pg.C_scaffold_1003013
Length=420

 Score =  667 bits (361),  Expect = 0.0
 Identities = 401/420 (95%), Gaps = 3/420 (1%)
 Strand=Plus/Plus

Query  52   ATGGCGAAGAAGAAGGAACTGTTATCAAAAGCACCGTGGAGAGGCGACGACGAAGATGAT  111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  1    ATGGCGAAGAAGAAGGAACTGTTATCAAAAGCACCGTGGAGAGGCGACGACGATGATGAC  60

Query  112  TCCGATAAGTTTAGCAACGCAAAGCTTAAAGTCACAAAGGATTCTGATGGTATGTCGAAG  171
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCTGATAAGTTTAGCAACGCAAAGCTTAAAGTCACAAAGGATTCTGATGGTATGTCGAAG  120

Query  172  ATGCACGTCCCTAGCCGCGGAACCAAAAAAGGAAGTCTCGCTGATGATGATGATGAT--T  229
            |||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||  |
Sbjct  121  ATGCACGTTCCTAGTCGTGGAACCAAAAAGGGAAGTCTCGCTGATGATGATGATGATGAT  180

Query  230  -CACTTGAGATTGATCCTCAGCTTCGTTACAGCTTCAATCGCAACTATCAGTTCCTGCAA  288
             |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  181  TCACTTGAGATTGATCCTCAGCTTCGTTACAGCTTCAATCGCAACTACCAGTTCCTGCAA  240

Query  289  AGTGTATTCACTATAGACACTTTGGTGAAGCCTCTTCCTCCTTCAATGGCATTCAATGTC  348
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct  241  AGTGTATTCACTATAGACACTTTGGTGAAGCCTCTTCCTCCTGCAATGGCATTCAACGTC  300

Query  349  TCTCGCAACTTGAGCTTCTTCACCCGCATTTTCACTCAATTCTTTGATCCTGAAGGCATT  408
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  301  TCTCGCAACTTGAGTTTCTTCACCCGCATTTTCACTCAGTTCTTTGATCCTGAAGGCATT  360

Query  409  GCAAATGCACAGAAGTCTCTAGGGTTGGGGCAGGAAGAGAAAGCTCGCCGTGTTCGTTGA  468
            |||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct  361  GCAAATGCACAGAAGTCTCTGGGGTTGGGGCAGGAAGATAAAGCGCGTCGTGTTCGTTGA  420


> Ahg922485 jgi|Araly1|922485|scaffold_103766.1
Length=231

 Score =  137 bits (74),  Expect = 8e-32
 Identities = 78/80 (98%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  490  TGTGAATGGACCCAGCACTGTTAGATTGATTAAAATATGTCCTCAAAGAGATGTTTTGTA  549
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  TGTGAATGGACCCAGCATTGTTAGATTGATTAAAATATGTCCTCAAAGAGATGTTTTGTA  211

Query  550  TGAATTTTCCTAAGTACAAT  569
            ||||||||| ||||||||||
Sbjct  212  TGAATTTTCGTAAGTACAAT  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24208052295


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5